Wall clock time and date at job start Wed Apr 1 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48500 * 109.47677 * 240.00717 * 3 2 1 5 5 H 1.48510 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47191 * 119.99963 * 3 2 1 7 7 C 1.38814 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99812 * 170.60123 * 7 2 1 9 9 N 1.36937 * 119.99841 * 350.60702 * 7 2 1 10 10 C 1.47170 * 126.09615 * 169.96932 * 9 7 2 11 11 C 1.55413 * 105.72623 * 149.52996 * 10 9 7 12 12 H 1.09001 * 109.15802 * 271.47854 * 11 10 9 13 13 C 1.50963 * 111.67774 * 150.22642 * 11 10 9 14 14 C 1.53163 * 111.89945 * 179.25102 * 13 11 10 15 15 N 1.49722 * 105.59468 * 99.88122 * 14 13 11 16 16 C 1.34774 * 122.75436 * 111.57042 * 15 14 13 17 17 O 1.21277 * 120.00635 * 359.97438 * 16 15 14 18 18 C 1.50709 * 119.99554 * 179.97438 * 16 15 14 19 19 H 1.08993 * 115.55062 * 34.32772 * 18 16 15 20 20 C 1.53000 * 117.49640 * 248.61923 * 18 16 15 21 21 C 1.53000 * 60.00392 * 252.51230 * 20 18 16 22 22 H 1.09004 * 117.49573 * 107.48291 * 21 20 18 23 23 C 1.50693 * 117.51943 * 252.52215 * 21 20 18 24 24 C 1.34673 * 126.59004 * 33.64942 * 23 21 20 25 25 N 1.34129 * 108.01769 * 179.97438 * 24 23 21 26 26 C 1.30497 * 109.25815 * 359.97438 * 25 24 23 27 27 N 1.35046 * 108.70181 * 359.76899 * 26 25 24 28 28 H 0.96994 * 126.40040 * 180.26677 * 27 26 25 29 29 C 1.43639 * 114.48592 * 291.60555 * 15 14 13 30 30 C 1.51109 * 114.76488 * 57.96392 * 29 15 14 31 31 C 1.51862 * 112.30581 * 274.93757 * 30 29 15 32 32 H 1.08999 * 110.94878 * 323.29732 * 31 30 29 33 33 C 1.46773 * 126.09798 * 349.99837 * 9 7 2 34 34 H 0.97005 * 119.99497 * 359.97438 * 1 2 3 35 35 H 1.09001 * 110.21121 * 268.80764 * 10 9 7 36 36 H 1.08992 * 110.21858 * 30.64065 * 10 9 7 37 37 H 1.08997 * 108.97927 * 58.64526 * 13 11 10 38 38 H 1.09006 * 108.97581 * 299.84987 * 13 11 10 39 39 H 1.09001 * 110.21027 * 218.89567 * 14 13 11 40 40 H 1.09000 * 110.21315 * 340.72378 * 14 13 11 41 41 H 1.09007 * 117.50347 * 0.02562 * 20 18 16 42 42 H 1.09000 * 117.49977 * 145.01992 * 20 18 16 43 43 H 1.07995 * 125.99126 * 359.96378 * 24 23 21 44 44 H 1.08000 * 125.65377 * 180.02562 * 26 25 24 45 45 H 1.08998 * 108.42797 * 179.33266 * 29 15 14 46 46 H 1.09000 * 108.42267 * 296.59736 * 29 15 14 47 47 H 1.08997 * 108.91287 * 35.66138 * 30 29 15 48 48 H 1.09003 * 108.91641 * 154.20771 * 30 29 15 49 49 H 1.09002 * 109.77126 * 80.64867 * 33 9 7 50 50 H 1.08995 * 109.80145 * 319.88002 * 33 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0793 -1.2084 -0.1533 9 7 1.3392 -2.3802 0.1925 10 6 1.8924 -3.7323 0.0145 11 6 1.1348 -4.6342 1.0284 12 1 1.6623 -4.6216 1.9822 13 6 1.0210 -6.0559 0.5335 14 6 0.2912 -6.9535 1.5372 15 7 -1.1125 -7.0674 1.0289 16 6 -1.6209 -8.2171 0.5427 17 8 -0.9336 -9.2156 0.5038 18 6 -3.0435 -8.2618 0.0474 19 1 -3.4034 -7.3512 -0.4314 20 6 -4.0497 -9.0775 0.8616 21 6 -3.5619 -9.5963 -0.4926 22 1 -2.8739 -10.4417 -0.4895 23 6 -4.5311 -9.5510 -1.6457 24 6 -5.4793 -8.6192 -1.8612 25 7 -6.1259 -8.9393 -2.9919 26 6 -5.6142 -10.0335 -3.4855 27 7 -4.6125 -10.4453 -2.6787 28 1 -4.0560 -11.2294 -2.8064 29 6 -1.8725 -5.8507 1.1011 30 6 -1.2702 -4.6830 0.3547 31 6 -0.2429 -3.9353 1.1864 32 1 -0.5426 -3.8970 2.2337 33 6 -0.0600 -2.5195 0.6132 34 1 -0.4849 0.8401 0.0004 35 1 1.7197 -4.0788 -1.0044 36 1 2.9594 -3.7350 0.2369 37 1 2.0217 -6.4535 0.3644 38 1 0.4740 -6.0603 -0.4094 39 1 0.7598 -7.9370 1.5731 40 1 0.2997 -6.4965 2.5268 41 1 -3.6829 -9.5816 1.7559 42 1 -5.0719 -8.7035 0.9188 43 1 -5.6833 -7.7644 -1.2336 44 1 -5.9354 -10.5259 -4.3914 45 1 -2.8670 -6.0413 0.6979 46 1 -1.9777 -5.5720 2.1496 47 1 -0.7900 -5.0526 -0.5513 48 1 -2.0670 -3.9940 0.0743 49 1 -0.7184 -2.3810 -0.2444 50 1 -0.2909 -1.7789 1.3788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946631298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:41 Heat of formation + Delta-G solvation = 82.687528 kcal Electronic energy + Delta-G solvation = -30347.856720 eV Core-core repulsion = 26377.625681 eV Total energy + Delta-G solvation = -3970.231039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.38768 -40.53793 -38.85673 -36.84591 -35.86016 -33.19128 -32.79731 -32.21378 -30.81481 -29.57809 -27.57208 -27.52763 -25.10102 -23.92478 -23.59227 -22.91731 -22.08953 -21.92030 -20.69145 -20.26747 -19.11829 -18.52866 -18.26383 -17.32061 -16.82716 -16.18639 -15.55500 -15.25402 -14.95837 -14.81573 -14.76244 -14.46025 -14.07029 -13.91371 -13.78216 -13.50968 -13.17483 -13.04746 -12.67410 -12.51587 -12.44407 -12.29989 -11.74178 -11.58094 -11.37740 -11.25420 -11.00737 -10.98488 -10.82379 -10.76331 -10.67511 -10.29329 -10.28485 -10.12169 -9.94663 -9.87634 -9.72872 -9.60092 -9.54796 -8.67180 -8.56914 -8.54951 -6.81202 -5.74857 -3.06659 1.58237 2.35789 2.65543 2.82993 2.94837 3.40056 3.44781 3.45762 3.65197 4.14289 4.35403 4.42412 4.49425 4.49540 4.69320 4.75285 4.87571 5.00695 5.03421 5.15403 5.21034 5.22420 5.25836 5.33500 5.40443 5.50883 5.54563 5.58497 5.61916 5.70350 5.79596 5.87866 5.96901 6.02339 6.07712 6.16542 6.23516 6.29807 6.39640 6.44540 6.51531 6.62608 6.69526 6.81656 7.02550 7.02906 7.45237 7.52097 7.61790 7.74843 7.78813 8.05512 8.27266 9.20849 9.82249 10.51777 11.38553 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.002326 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.567548 B =12035.232583 C =13083.697073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.599 5.599 10 C 0.140 3.860 11 C -0.099 4.099 12 H 0.064 0.936 13 C -0.126 4.126 14 C 0.116 3.884 15 N -0.601 5.601 16 C 0.552 3.448 17 O -0.549 6.549 18 C -0.173 4.173 19 H 0.132 0.868 20 C -0.130 4.130 21 C -0.056 4.056 22 H 0.124 0.876 23 C 0.010 3.990 24 C -0.021 4.021 25 N -0.492 5.492 26 C 0.184 3.816 27 N -0.565 5.565 28 H 0.420 0.580 29 C 0.105 3.895 30 C -0.130 4.130 31 C -0.104 4.104 32 H 0.066 0.934 33 C 0.179 3.821 34 H 0.253 0.747 35 H 0.014 0.986 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.169 0.831 44 H 0.209 0.791 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.031 0.969 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 -21.977 0.837 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.324 5.324 10 C 0.013 3.987 11 C -0.119 4.119 12 H 0.082 0.918 13 C -0.164 4.164 14 C -0.006 4.006 15 N -0.333 5.333 16 C 0.341 3.659 17 O -0.427 6.427 18 C -0.194 4.194 19 H 0.150 0.850 20 C -0.168 4.168 21 C -0.076 4.076 22 H 0.142 0.858 23 C -0.105 4.105 24 C -0.169 4.169 25 N -0.210 5.210 26 C -0.100 4.100 27 N -0.168 5.168 28 H 0.258 0.742 29 C -0.019 4.019 30 C -0.168 4.168 31 C -0.123 4.123 32 H 0.085 0.915 33 C 0.053 3.947 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.186 0.814 44 H 0.225 0.775 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.049 0.951 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.020 -21.768 0.433 23.967 hybrid contribution 1.393 0.315 0.097 1.431 sum -8.628 -21.453 0.530 23.129 Atomic orbital electron populations 1.69950 1.04927 1.25278 1.56301 1.24816 0.95641 0.97769 1.02108 0.86232 0.78557 0.83235 0.77936 1.21114 1.21595 1.21195 1.18977 0.91046 0.82752 1.43055 0.90699 1.44312 1.09334 0.99862 1.78884 1.21576 0.95821 0.86283 0.94989 1.22110 0.97074 0.92992 0.99720 0.91795 1.21681 1.00473 0.94793 0.99491 1.22332 0.80171 1.00638 0.97414 1.47987 1.14775 1.09280 1.61259 1.19382 0.87365 0.82369 0.76804 1.90670 1.61193 1.34275 1.56573 1.22432 0.93568 0.97339 1.06085 0.84984 1.23143 0.98732 1.00752 0.94188 1.20116 0.98528 0.97770 0.91197 0.85795 1.20297 1.02329 0.94882 0.93026 1.22065 0.96645 1.01001 0.97162 1.70306 1.27816 1.12763 1.10130 1.25001 0.90485 0.95619 0.98886 1.43192 1.29564 1.23834 1.20169 0.74186 1.20756 0.94856 0.84857 1.01397 1.21588 0.99616 0.95908 0.99703 1.22239 0.93565 0.97944 0.98573 0.91518 1.21079 0.86107 0.89881 0.97590 0.93685 0.96803 0.94328 0.91678 0.90741 0.89502 0.90251 0.87456 0.87004 0.81370 0.77454 0.90708 0.91765 0.91085 0.90527 0.95110 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.70 55.49 0.59 -26.10 16 2 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16 3 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.39 10.26 -15.06 -0.15 -6.55 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 N -0.60 -15.13 3.37 -170.46 -0.57 -15.71 16 10 C 0.14 2.87 6.78 -2.40 -0.02 2.85 16 11 C -0.10 -1.62 2.69 -89.15 -0.24 -1.86 16 12 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 13 C -0.13 -1.72 4.64 -27.67 -0.13 -1.85 16 14 C 0.12 1.41 6.26 -2.16 -0.01 1.39 16 15 N -0.60 -7.17 2.67 -174.28 -0.47 -7.64 16 16 C 0.55 6.84 7.55 -10.98 -0.08 6.76 16 17 O -0.55 -8.41 15.95 5.56 0.09 -8.32 16 18 C -0.17 -1.61 4.64 -91.76 -0.43 -2.04 16 19 H 0.13 1.15 6.62 -51.93 -0.34 0.80 16 20 C -0.13 -0.95 9.76 -26.73 -0.26 -1.21 16 21 C -0.06 -0.48 5.84 -91.77 -0.54 -1.02 16 22 H 0.12 1.14 7.67 -51.93 -0.40 0.74 16 23 C 0.01 0.09 6.92 -81.60 -0.56 -0.47 16 24 C -0.02 -0.21 10.94 -17.81 -0.19 -0.41 16 25 N -0.49 -5.57 11.25 -14.66 -0.16 -5.74 16 26 C 0.18 1.45 13.04 -90.37 -1.18 0.27 16 27 N -0.56 -4.01 6.15 -10.30 -0.06 -4.07 16 28 H 0.42 1.71 8.96 -40.82 -0.37 1.34 16 29 C 0.11 1.17 5.62 -6.51 -0.04 1.13 16 30 C -0.13 -1.84 4.53 -28.26 -0.13 -1.97 16 31 C -0.10 -1.76 3.09 -89.55 -0.28 -2.03 16 32 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 33 C 0.18 4.14 4.99 -3.46 -0.02 4.12 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.01 0.30 8.00 -51.93 -0.42 -0.12 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.11 5.57 -51.93 -0.29 0.82 16 39 H 0.09 1.08 7.31 -51.93 -0.38 0.70 16 40 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 41 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.11 0.65 7.95 -51.93 -0.41 0.24 16 43 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.07 0.69 5.63 -51.93 -0.29 0.39 16 46 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 47 H 0.07 1.10 5.78 -51.93 -0.30 0.80 16 48 H 0.08 1.11 7.63 -51.93 -0.40 0.71 16 49 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 50 H 0.06 1.48 7.13 -51.93 -0.37 1.11 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -34.66 387.48 -11.75 -46.41 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.63 Total: 1.51 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -4.35 Total: -3.15 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.67 Total: -59.25 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.66 -11.75 -46.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946631298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.102 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds