Wall clock time and date at job start Wed Apr 1 2020 03:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38569 * 119.97126 * 2 1 4 4 C 1.38815 * 118.07150 * 180.24131 * 3 2 1 5 5 C 1.39717 * 117.90001 * 359.51623 * 4 3 2 6 6 C 1.48155 * 120.18749 * 180.22394 * 5 4 3 7 7 O 1.21517 * 119.99830 * 7.36125 * 6 5 4 8 8 N 1.34778 * 120.00139 * 187.35561 * 6 5 4 9 9 C 1.46926 * 120.64430 * 8.08288 * 8 6 5 10 10 C 1.53623 * 108.53867 * 126.32354 * 9 8 6 11 11 C 1.53044 * 109.25646 * 54.86925 * 10 9 8 12 12 C 1.53025 * 109.44032 * 58.57588 * 11 10 9 13 13 C 1.53195 * 109.33253 * 181.22988 * 12 11 10 14 14 N 1.46930 * 108.78293 * 305.37085 * 13 12 11 15 15 C 1.36938 * 120.64342 * 233.61873 * 14 13 12 16 16 H 1.08005 * 119.99756 * 23.39570 * 15 14 13 17 17 C 1.38814 * 119.99920 * 203.39198 * 15 14 13 18 18 N 1.31622 * 119.99906 * 23.58235 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 203.57989 * 17 15 14 20 20 H 1.48497 * 109.47122 * 90.00001 * 19 17 15 21 21 H 1.48497 * 109.47161 * 210.00560 * 19 17 15 22 22 H 1.48507 * 109.46732 * 330.00205 * 19 17 15 23 23 C 1.46928 * 118.71527 * 53.63759 * 14 13 12 24 24 C 1.53053 * 109.38999 * 178.60221 * 11 10 9 25 25 C 1.53028 * 109.54835 * 298.55700 * 11 10 9 26 26 C 1.46930 * 120.64351 * 188.36573 * 8 6 5 27 27 N 1.32790 * 119.63022 * 0.25054 * 5 4 3 28 28 N 1.28346 * 122.03433 * 359.97438 * 27 5 4 29 29 H 1.09002 * 109.47116 * 270.25798 * 1 2 3 30 30 H 1.09003 * 109.47072 * 30.25255 * 1 2 3 31 31 H 1.09000 * 109.47748 * 150.25469 * 1 2 3 32 32 H 1.08002 * 120.96085 * 0.03095 * 3 2 1 33 33 H 1.07998 * 121.05373 * 179.78610 * 4 3 2 34 34 H 1.08994 * 109.58918 * 246.15701 * 9 8 6 35 35 H 1.09001 * 109.58766 * 6.58591 * 9 8 6 36 36 H 1.09002 * 109.63013 * 294.87078 * 10 9 8 37 37 H 1.08997 * 109.42742 * 174.74106 * 10 9 8 38 38 H 1.09001 * 109.49432 * 301.18484 * 12 11 10 39 39 H 1.08993 * 109.49598 * 61.27236 * 12 11 10 40 40 H 1.09004 * 109.58416 * 185.58170 * 13 12 11 41 41 H 1.08996 * 109.70411 * 65.23570 * 13 12 11 42 42 H 0.96993 * 119.99794 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.58663 * 186.57447 * 23 14 13 44 44 H 1.08997 * 109.69917 * 66.21543 * 23 14 13 45 45 H 1.09001 * 109.49043 * 298.68907 * 24 11 10 46 46 H 1.08995 * 109.49409 * 58.76775 * 24 11 10 47 47 H 1.08993 * 109.49771 * 301.34642 * 25 11 10 48 48 H 1.09006 * 109.49271 * 181.25914 * 25 11 10 49 49 H 1.09004 * 109.58508 * 353.40218 * 26 8 6 50 50 H 1.08995 * 109.58922 * 113.68411 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 -0.0052 5 6 4.1991 -0.1014 0.0004 6 6 5.6767 -0.2095 0.0003 7 8 6.3589 0.7877 0.1302 8 7 6.2643 -1.4139 -0.1438 9 6 5.4661 -2.6014 -0.4774 10 6 6.0744 -3.2649 -1.7223 11 6 7.5552 -3.5553 -1.4668 12 6 7.6921 -4.4665 -0.2450 13 6 9.1764 -4.7306 0.0270 14 7 9.7938 -5.2635 -1.1952 15 6 10.4942 -6.4399 -1.1675 16 1 10.2996 -7.1660 -0.3921 17 6 11.4542 -6.6990 -2.1361 18 7 12.0270 -5.7029 -2.7780 19 14 11.9331 -8.4614 -2.5285 20 1 11.0591 -8.9828 -3.6100 21 1 13.3492 -8.5022 -2.9735 22 1 11.7716 -9.3004 -1.3138 23 6 9.6454 -4.5096 -2.4476 24 6 8.1560 -4.2481 -2.6922 25 6 8.2975 -2.2421 -1.2092 26 6 7.7146 -1.5659 0.0357 27 7 3.4495 -1.1974 0.0052 28 7 2.1671 -1.1452 0.0055 29 1 -0.3633 0.0046 1.0277 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3634 -0.8922 -0.5098 32 1 1.6745 2.1444 0.0005 33 1 4.1741 2.0606 -0.0088 34 1 5.4843 -3.3006 0.3585 35 1 4.4382 -2.3042 -0.6856 36 1 5.9771 -2.5967 -2.5779 37 1 5.5509 -4.1986 -1.9279 38 1 7.2440 -3.9816 0.6224 39 1 7.1838 -5.4113 -0.4371 40 1 9.2765 -5.4569 0.8335 41 1 9.6694 -3.8005 0.3097 42 1 12.6981 -5.8840 -3.4545 43 1 10.0550 -5.0901 -3.2742 44 1 10.1752 -3.5602 -2.3698 45 1 7.6436 -5.1949 -2.8623 46 1 8.0378 -3.6079 -3.5663 47 1 8.1804 -1.5833 -2.0695 48 1 9.3560 -2.4479 -1.0495 49 1 8.1714 -0.5848 0.1662 50 1 7.9117 -2.1804 0.9141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957545853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:05 Heat of formation + Delta-G solvation = 61.701603 kcal Electronic energy + Delta-G solvation = -31120.333232 eV Core-core repulsion = 27149.192175 eV Total energy + Delta-G solvation = -3971.141057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.73569 -40.25265 -38.68180 -36.01962 -34.62737 -33.48836 -33.44133 -31.30165 -30.93089 -30.00779 -28.95738 -27.85142 -25.73978 -24.81545 -24.09750 -23.19577 -22.90531 -21.90525 -21.01774 -19.90252 -18.48713 -17.71935 -17.19381 -16.57015 -16.21282 -15.99824 -15.93273 -14.99152 -14.91768 -14.65936 -14.25321 -14.16382 -13.95975 -13.70266 -13.65428 -13.59641 -13.31364 -13.17968 -12.91808 -12.85507 -12.68078 -12.35927 -11.57629 -11.48987 -11.31631 -11.22539 -11.18573 -10.96700 -10.71030 -10.69526 -10.55594 -10.35454 -10.20909 -10.16019 -10.14026 -9.96106 -9.83671 -9.46466 -9.44202 -9.20951 -8.49562 -8.36511 -6.66685 -5.75843 -3.09802 0.04464 0.30916 2.37982 2.75336 3.25805 3.41323 3.44167 3.48979 3.49702 3.89040 4.05067 4.18432 4.42483 4.49984 4.54707 4.93422 5.00305 5.04926 5.12490 5.16319 5.20955 5.33453 5.36658 5.40111 5.48040 5.51086 5.54269 5.63433 5.71197 5.81868 5.90591 6.02294 6.11177 6.13756 6.17008 6.27080 6.30690 6.41466 6.45160 6.61384 6.61984 6.72155 6.78197 6.91327 6.96960 7.05886 7.31931 7.42843 7.70334 7.85015 7.88389 8.16173 8.46512 9.24986 9.91176 10.46260 11.32731 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002412 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.441340 B =11606.260854 C =12114.594046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.083 3.917 3 C -0.121 4.121 4 C -0.062 4.062 5 C 0.024 3.976 6 C 0.570 3.430 7 O -0.537 6.537 8 N -0.579 5.579 9 C 0.073 3.927 10 C -0.123 4.123 11 C -0.048 4.048 12 C -0.124 4.124 13 C 0.145 3.855 14 N -0.591 5.591 15 C -0.249 4.249 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.168 3.832 24 C -0.129 4.129 25 C -0.123 4.123 26 C 0.109 3.891 27 N -0.197 5.197 28 N -0.247 5.247 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.085 0.915 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.897 14.585 4.777 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.060 4.060 3 C -0.150 4.150 4 C -0.091 4.091 5 C -0.121 4.121 6 C 0.354 3.646 7 O -0.414 6.414 8 N -0.310 5.310 9 C -0.050 4.050 10 C -0.162 4.162 11 C -0.048 4.048 12 C -0.163 4.163 13 C 0.019 3.981 14 N -0.314 5.314 15 C -0.378 4.378 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.544 5.544 19 Si 0.726 3.274 20 H -0.216 1.216 21 H -0.220 1.220 22 H -0.205 1.205 23 C 0.043 3.957 24 C -0.168 4.168 25 C -0.161 4.161 26 C -0.013 4.013 27 N -0.042 5.042 28 N -0.091 5.091 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.091 0.909 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.109 0.891 49 H 0.106 0.894 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.408 13.444 4.755 26.561 hybrid contribution 0.430 0.560 -0.351 0.789 sum -21.978 14.004 4.404 26.430 Atomic orbital electron populations 1.20756 0.87039 1.04461 1.03960 1.23087 0.99362 0.90462 0.93116 1.22339 0.94217 1.00217 0.98263 1.22438 0.95054 0.99151 0.92479 1.22962 0.96634 0.92050 1.00493 1.17594 0.85087 0.83818 0.78062 1.90784 1.63443 1.35855 1.51313 1.48042 1.09058 1.07766 1.66091 1.23095 0.97790 0.86231 0.97839 1.22117 0.96656 1.00360 0.97033 1.20408 0.93095 0.94398 0.96922 1.22133 0.99543 0.98549 0.96123 1.20914 0.90534 0.96522 0.90169 1.44083 1.60282 1.24433 1.02571 1.19203 1.13410 0.92755 1.12473 0.91577 1.24872 0.96379 0.97117 1.01523 1.70108 1.27025 1.29268 1.27972 0.86376 0.77180 0.85387 0.78441 1.21577 1.21956 1.20521 1.20804 0.89446 0.95106 0.90384 1.22207 1.00683 0.98826 0.95076 1.22020 1.01408 0.96008 0.96628 1.21847 0.78271 1.02015 0.99119 1.73220 0.99312 1.24681 1.07030 1.73155 1.01432 1.24813 1.09715 0.89435 0.89965 0.89535 0.82485 0.81918 0.90872 0.84772 0.92399 0.90885 0.93012 0.92292 0.93194 0.96398 0.93754 0.89646 0.96308 0.92650 0.93588 0.92274 0.89077 0.89368 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 10.19 36.00 0.37 -0.04 16 2 C 0.08 0.62 6.87 -82.32 -0.57 0.06 16 3 C -0.12 -0.76 9.86 -39.25 -0.39 -1.15 16 4 C -0.06 -0.55 9.73 -38.82 -0.38 -0.93 16 5 C 0.02 0.29 6.68 -82.83 -0.55 -0.27 16 6 C 0.57 8.08 7.66 -12.19 -0.09 7.98 16 7 O -0.54 -8.72 15.85 5.35 0.08 -8.64 16 8 N -0.58 -8.10 2.97 -173.50 -0.51 -8.62 16 9 C 0.07 0.96 5.47 -3.49 -0.02 0.94 16 10 C -0.12 -1.72 4.92 -26.38 -0.13 -1.85 16 11 C -0.05 -0.78 0.51 -154.43 -0.08 -0.85 16 12 C -0.12 -2.10 4.15 -26.62 -0.11 -2.21 16 13 C 0.14 2.97 6.04 -3.71 -0.02 2.95 16 14 N -0.59 -14.57 3.01 -172.32 -0.52 -15.09 16 15 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 16 H 0.07 1.80 7.91 -52.48 -0.41 1.38 16 17 C 0.00 -0.02 4.78 -17.43 -0.08 -0.10 16 18 N -0.90 -26.19 11.29 55.49 0.63 -25.56 16 19 Si 0.90 21.86 29.61 -169.99 -5.03 16.83 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.17 3.95 4.92 -3.71 -0.02 3.93 16 24 C -0.13 -2.44 4.90 -26.61 -0.13 -2.57 16 25 C -0.12 -1.96 4.15 -26.62 -0.11 -2.07 16 26 C 0.11 1.58 5.97 -3.71 -0.02 1.56 16 27 N -0.20 -2.38 7.30 33.32 0.24 -2.14 16 28 N -0.25 -2.69 11.43 33.63 0.38 -2.30 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.14 8.09 -51.93 -0.42 -0.28 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.16 1.23 7.74 -52.49 -0.41 0.83 16 34 H 0.07 0.95 6.66 -51.93 -0.35 0.61 16 35 H 0.14 1.73 3.98 -136.88 -0.54 1.19 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.78 4.98 -51.93 -0.26 0.52 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.02 7.91 -51.93 -0.41 0.61 16 41 H 0.02 0.37 6.74 -51.93 -0.35 0.02 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.09 2.29 5.91 -51.93 -0.31 1.98 16 44 H 0.02 0.46 6.67 -51.93 -0.35 0.12 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.65 4.99 -51.93 -0.26 1.39 16 49 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 50 H 0.08 1.07 6.74 -51.93 -0.35 0.72 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -32.24 375.98 -9.26 -41.50 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.72 Total: -0.05 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.48 Total: -1.59 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.22 Total: -53.71 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.24 -9.26 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957545853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.198 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds