Wall clock time and date at job start Wed Apr 1 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38569 * 119.97126 * 2 1 4 4 C 1.38815 * 118.07150 * 180.24131 * 3 2 1 5 5 C 1.39717 * 117.90001 * 359.51623 * 4 3 2 6 6 C 1.48155 * 120.18749 * 180.22394 * 5 4 3 7 7 O 1.21517 * 119.99830 * 7.36125 * 6 5 4 8 8 N 1.34778 * 120.00139 * 187.35561 * 6 5 4 9 9 C 1.46926 * 120.64430 * 8.08288 * 8 6 5 10 10 C 1.53623 * 108.53867 * 126.32354 * 9 8 6 11 11 C 1.53044 * 109.25646 * 54.86925 * 10 9 8 12 12 C 1.53025 * 109.44032 * 58.57588 * 11 10 9 13 13 C 1.53195 * 109.33253 * 181.22988 * 12 11 10 14 14 N 1.46930 * 108.78293 * 305.37085 * 13 12 11 15 15 C 1.36938 * 120.64342 * 233.61873 * 14 13 12 16 16 H 1.08005 * 119.99756 * 23.39570 * 15 14 13 17 17 C 1.38814 * 119.99920 * 203.39198 * 15 14 13 18 18 N 1.31622 * 119.99906 * 23.58235 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 203.57989 * 17 15 14 20 20 H 1.48497 * 109.47122 * 90.00001 * 19 17 15 21 21 H 1.48497 * 109.47161 * 210.00560 * 19 17 15 22 22 H 1.48507 * 109.46732 * 330.00205 * 19 17 15 23 23 C 1.46928 * 118.71527 * 53.63759 * 14 13 12 24 24 C 1.53053 * 109.38999 * 178.60221 * 11 10 9 25 25 C 1.53028 * 109.54835 * 298.55700 * 11 10 9 26 26 C 1.46930 * 120.64351 * 188.36573 * 8 6 5 27 27 N 1.32790 * 119.63022 * 0.25054 * 5 4 3 28 28 N 1.28346 * 122.03433 * 359.97438 * 27 5 4 29 29 H 1.09002 * 109.47116 * 270.25798 * 1 2 3 30 30 H 1.09003 * 109.47072 * 30.25255 * 1 2 3 31 31 H 1.09000 * 109.47748 * 150.25469 * 1 2 3 32 32 H 1.08002 * 120.96085 * 0.03095 * 3 2 1 33 33 H 1.07998 * 121.05373 * 179.78610 * 4 3 2 34 34 H 1.08994 * 109.58918 * 246.15701 * 9 8 6 35 35 H 1.09001 * 109.58766 * 6.58591 * 9 8 6 36 36 H 1.09002 * 109.63013 * 294.87078 * 10 9 8 37 37 H 1.08997 * 109.42742 * 174.74106 * 10 9 8 38 38 H 1.09001 * 109.49432 * 301.18484 * 12 11 10 39 39 H 1.08993 * 109.49598 * 61.27236 * 12 11 10 40 40 H 1.09004 * 109.58416 * 185.58170 * 13 12 11 41 41 H 1.08996 * 109.70411 * 65.23570 * 13 12 11 42 42 H 0.96993 * 119.99794 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.58663 * 186.57447 * 23 14 13 44 44 H 1.08997 * 109.69917 * 66.21543 * 23 14 13 45 45 H 1.09001 * 109.49043 * 298.68907 * 24 11 10 46 46 H 1.08995 * 109.49409 * 58.76775 * 24 11 10 47 47 H 1.08993 * 109.49771 * 301.34642 * 25 11 10 48 48 H 1.09006 * 109.49271 * 181.25914 * 25 11 10 49 49 H 1.09004 * 109.58508 * 353.40218 * 26 8 6 50 50 H 1.08995 * 109.58922 * 113.68411 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 -0.0052 5 6 4.1991 -0.1014 0.0004 6 6 5.6767 -0.2095 0.0003 7 8 6.3589 0.7877 0.1302 8 7 6.2643 -1.4139 -0.1438 9 6 5.4661 -2.6014 -0.4774 10 6 6.0744 -3.2649 -1.7223 11 6 7.5552 -3.5553 -1.4668 12 6 7.6921 -4.4665 -0.2450 13 6 9.1764 -4.7306 0.0270 14 7 9.7938 -5.2635 -1.1952 15 6 10.4942 -6.4399 -1.1675 16 1 10.2996 -7.1660 -0.3921 17 6 11.4542 -6.6990 -2.1361 18 7 12.0270 -5.7029 -2.7780 19 14 11.9331 -8.4614 -2.5285 20 1 11.0591 -8.9828 -3.6100 21 1 13.3492 -8.5022 -2.9735 22 1 11.7716 -9.3004 -1.3138 23 6 9.6454 -4.5096 -2.4476 24 6 8.1560 -4.2481 -2.6922 25 6 8.2975 -2.2421 -1.2092 26 6 7.7146 -1.5659 0.0357 27 7 3.4495 -1.1974 0.0052 28 7 2.1671 -1.1452 0.0055 29 1 -0.3633 0.0046 1.0277 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3634 -0.8922 -0.5098 32 1 1.6745 2.1444 0.0005 33 1 4.1741 2.0606 -0.0088 34 1 5.4843 -3.3006 0.3585 35 1 4.4382 -2.3042 -0.6856 36 1 5.9771 -2.5967 -2.5779 37 1 5.5509 -4.1986 -1.9279 38 1 7.2440 -3.9816 0.6224 39 1 7.1838 -5.4113 -0.4371 40 1 9.2765 -5.4569 0.8335 41 1 9.6694 -3.8005 0.3097 42 1 12.6981 -5.8840 -3.4545 43 1 10.0550 -5.0901 -3.2742 44 1 10.1752 -3.5602 -2.3698 45 1 7.6436 -5.1949 -2.8623 46 1 8.0378 -3.6079 -3.5663 47 1 8.1804 -1.5833 -2.0695 48 1 9.3560 -2.4479 -1.0495 49 1 8.1714 -0.5848 0.1662 50 1 7.9117 -2.1804 0.9141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957545853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:04 Heat of formation + Delta-G solvation = 42.378124 kcal Electronic energy + Delta-G solvation = -31121.171161 eV Core-core repulsion = 27149.192175 eV Total energy + Delta-G solvation = -3971.978986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.52286 -41.40314 -39.94829 -37.48704 -35.51936 -34.82357 -34.17578 -33.05653 -32.14066 -31.64125 -29.89368 -29.08156 -26.93213 -26.12184 -25.05247 -24.60947 -23.87398 -23.46917 -22.34937 -21.23572 -19.53926 -19.11013 -18.31554 -17.98547 -17.12873 -17.00569 -16.79472 -16.71715 -15.91423 -15.82778 -15.69765 -15.39186 -15.17232 -15.14340 -14.86926 -14.64375 -14.57784 -14.31348 -14.13554 -13.74067 -13.42200 -13.21211 -13.13129 -13.05225 -12.95446 -12.78173 -12.54516 -12.32555 -12.22349 -12.14421 -12.04410 -11.78773 -11.69796 -11.36439 -11.32863 -11.10045 -11.01300 -10.94959 -10.82370 -10.44093 -10.31871 -9.67134 -8.68626 -7.86784 -5.23292 -0.66324 -0.30735 1.45788 1.48152 1.48218 1.56293 1.75085 2.47967 2.52742 2.67690 3.24883 3.25352 3.40472 3.60427 3.71589 3.78051 3.80774 3.83499 3.90054 4.00399 4.14673 4.25089 4.38211 4.46878 4.57000 4.58146 4.60973 4.66410 4.74635 4.76454 4.79634 4.80051 4.81966 4.93749 4.98495 5.03682 5.03910 5.08033 5.16130 5.17736 5.30434 5.32041 5.39645 5.41628 5.47072 5.57690 5.63996 5.68580 5.82383 6.24784 6.38392 6.83075 7.16034 7.44628 7.90756 8.40691 9.19473 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002412 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.441340 B =11606.260854 C =12114.594046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.084 3.916 3 C -0.100 4.100 4 C -0.070 4.070 5 C 0.002 3.998 6 C 0.569 3.431 7 O -0.565 6.565 8 N -0.582 5.582 9 C 0.079 3.921 10 C -0.114 4.114 11 C -0.042 4.042 12 C -0.110 4.110 13 C 0.141 3.859 14 N -0.607 5.607 15 C -0.258 4.258 16 H 0.066 0.934 17 C -0.053 4.053 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.177 3.823 24 C -0.117 4.117 25 C -0.114 4.114 26 C 0.116 3.884 27 N -0.217 5.217 28 N -0.276 5.276 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.204 0.796 33 H 0.172 0.828 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.018 0.982 42 H 0.248 0.752 43 H 0.048 0.952 44 H 0.000 1.000 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.533 15.582 5.463 31.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.059 4.059 3 C -0.129 4.129 4 C -0.098 4.098 5 C -0.143 4.143 6 C 0.355 3.645 7 O -0.444 6.444 8 N -0.312 5.312 9 C -0.043 4.043 10 C -0.153 4.153 11 C -0.043 4.043 12 C -0.149 4.149 13 C 0.016 3.984 14 N -0.331 5.331 15 C -0.388 4.388 16 H 0.084 0.916 17 C -0.249 4.249 18 N -0.578 5.578 19 Si 0.789 3.211 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.194 1.194 23 C 0.051 3.949 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.006 4.006 27 N -0.062 5.062 28 N -0.120 5.120 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.189 0.811 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.018 0.982 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.082 14.429 5.462 30.303 hybrid contribution 1.468 0.347 -0.516 1.594 sum -24.614 14.776 4.946 29.132 Atomic orbital electron populations 1.20926 0.84247 1.05733 1.05165 1.23740 1.01104 0.89997 0.91079 1.22829 0.93006 1.01656 0.95367 1.22649 0.96446 0.98265 0.92452 1.22711 0.95157 0.93544 1.02925 1.17962 0.86267 0.83221 0.77072 1.90756 1.64472 1.36625 1.52559 1.48082 1.08618 1.08283 1.66245 1.23134 0.98060 0.85800 0.97311 1.22029 0.94497 1.01066 0.97681 1.20346 0.94770 0.93897 0.95267 1.21975 0.96691 0.98831 0.97393 1.21071 0.92586 0.96147 0.88617 1.44336 1.60347 1.24189 1.04223 1.19515 1.13142 0.93807 1.12307 0.91596 1.25606 0.96876 1.00548 1.01844 1.70248 1.27852 1.31064 1.28667 0.85369 0.76323 0.81134 0.78317 1.21424 1.22410 1.19390 1.20591 0.92133 0.93230 0.88949 1.22029 0.97272 0.99255 0.97036 1.21868 0.99919 0.96026 0.97377 1.21680 0.79024 1.01569 0.98331 1.73012 1.00127 1.25106 1.07924 1.73085 1.00875 1.26806 1.11232 0.88037 0.86987 0.89996 0.77914 0.81063 0.90478 0.83887 0.92262 0.89783 0.90495 0.92505 0.93410 0.96436 0.94269 0.93349 0.98226 0.93051 0.92342 0.92544 0.91651 0.89956 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 10.19 71.24 0.73 0.34 16 2 C 0.08 0.99 6.87 42.58 0.29 1.28 16 3 C -0.10 -0.86 9.86 22.49 0.22 -0.64 16 4 C -0.07 -1.07 9.73 22.77 0.22 -0.85 16 5 C 0.00 0.05 6.68 41.99 0.28 0.33 16 6 C 0.57 15.80 7.66 86.88 0.67 16.46 16 7 O -0.57 -18.30 15.85 -3.77 -0.06 -18.36 16 8 N -0.58 -15.82 2.97 -821.12 -2.44 -18.26 16 9 C 0.08 1.95 5.47 86.51 0.47 2.42 16 10 C -0.11 -3.01 4.92 30.82 0.15 -2.85 16 11 C -0.04 -1.35 0.51 -52.13 -0.03 -1.38 16 12 C -0.11 -3.61 4.15 30.67 0.13 -3.49 16 13 C 0.14 5.81 6.04 86.36 0.52 6.33 16 14 N -0.61 -30.71 3.01 -699.09 -2.10 -32.81 16 15 C -0.26 -14.41 9.59 84.03 0.81 -13.60 16 16 H 0.07 3.62 7.91 -2.91 -0.02 3.59 16 17 C -0.05 -3.05 4.78 84.86 0.41 -2.64 16 18 N -0.93 -56.27 11.29 21.65 0.24 -56.02 16 19 Si 0.96 45.85 29.61 68.60 2.03 47.88 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.18 8.62 4.92 86.36 0.42 9.04 16 24 C -0.12 -4.45 4.90 30.67 0.15 -4.30 16 25 C -0.11 -3.67 4.15 30.67 0.13 -3.54 16 26 C 0.12 3.34 5.97 86.36 0.52 3.86 16 27 N -0.22 -4.94 7.30 -48.48 -0.35 -5.29 16 28 N -0.28 -5.46 11.43 -47.53 -0.54 -6.00 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.11 -0.21 8.09 -2.39 -0.02 -0.23 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.20 -0.18 8.06 -2.91 -0.02 -0.21 16 33 H 0.17 2.25 7.74 -2.91 -0.02 2.23 16 34 H 0.08 1.84 6.66 -2.39 -0.02 1.83 16 35 H 0.15 3.48 3.98 -112.27 -0.45 3.03 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.17 4.98 -2.39 -0.01 2.16 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.96 7.91 -2.39 -0.02 1.94 16 41 H 0.02 0.73 6.74 -2.39 -0.02 0.72 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.05 2.71 5.91 -2.39 -0.01 2.70 16 44 H 0.00 -0.01 6.67 -2.39 -0.02 -0.03 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.06 2.45 4.99 -2.38 -0.01 2.44 16 49 H 0.08 2.49 7.00 -2.38 -0.02 2.47 16 50 H 0.08 2.24 6.74 -2.39 -0.02 2.23 16 Total: -1.00 -72.92 375.98 3.39 -69.54 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.52 Total: 12.55 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.09 Total: 6.78 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.19 Total: -118.39 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.06 Total: -18.36 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.92 3.39 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957545853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.914 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds