Wall clock time and date at job start Wed Apr 1 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38549 * 120.01160 * 2 1 4 4 C 1.40076 * 117.81415 * 180.02562 * 3 2 1 5 5 C 1.48138 * 121.14520 * 180.02562 * 4 3 2 6 6 O 1.21518 * 119.99589 * 38.49076 * 5 4 3 7 7 N 1.34773 * 120.00083 * 218.49292 * 5 4 3 8 8 C 1.46921 * 120.63454 * 5.82138 * 7 5 4 9 9 C 1.53189 * 108.77970 * 126.37212 * 8 7 5 10 10 C 1.53039 * 109.31190 * 54.63347 * 9 8 7 11 11 C 1.53033 * 109.54187 * 298.63852 * 10 9 8 12 12 H 1.09006 * 109.49561 * 301.41489 * 11 10 9 13 13 C 1.53002 * 109.50067 * 181.31669 * 11 10 9 14 14 H 1.08994 * 110.88519 * 300.69936 * 13 11 10 15 15 C 1.55157 * 111.00249 * 176.81963 * 13 11 10 16 16 C 1.54375 * 102.91743 * 206.44951 * 15 13 11 17 17 N 1.47019 * 107.28510 * 22.14251 * 16 15 13 18 18 C 1.36946 * 125.64545 * 181.05083 * 17 16 15 19 19 H 1.08001 * 119.99758 * 185.23822 * 18 17 16 20 20 C 1.38807 * 119.99703 * 5.24726 * 18 17 16 21 21 N 1.31611 * 120.00269 * 352.93950 * 20 18 17 22 22 Si 1.86808 * 119.99690 * 172.94464 * 20 18 17 23 23 H 1.48499 * 109.47094 * 94.98260 * 22 20 18 24 24 H 1.48493 * 109.46993 * 214.98590 * 22 20 18 25 25 H 1.48501 * 109.46854 * 334.98328 * 22 20 18 26 26 C 1.47419 * 108.70836 * 1.09073 * 17 16 15 27 27 C 1.46932 * 120.62791 * 185.54374 * 7 5 4 28 28 C 1.39765 * 117.70791 * 0.28499 * 4 3 2 29 29 N 1.31894 * 119.65602 * 359.42788 * 28 4 3 30 30 N 1.28273 * 122.32694 * 0.59736 * 29 28 4 31 31 H 1.08993 * 109.47687 * 90.00010 * 1 2 3 32 32 H 1.09008 * 109.46782 * 209.99630 * 1 2 3 33 33 H 1.08999 * 109.47137 * 329.99027 * 1 2 3 34 34 H 1.07992 * 121.09444 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.59007 * 246.16161 * 8 7 5 36 36 H 1.09007 * 109.58583 * 6.58384 * 8 7 5 37 37 H 1.09003 * 109.50132 * 174.59057 * 9 8 7 38 38 H 1.09002 * 109.49217 * 294.65072 * 9 8 7 39 39 H 1.08997 * 109.45851 * 58.66182 * 10 9 8 40 40 H 1.09000 * 109.45701 * 178.63037 * 10 9 8 41 41 H 1.08991 * 110.72264 * 324.78722 * 15 13 11 42 42 H 1.09002 * 110.71846 * 88.06169 * 15 13 11 43 43 H 1.08999 * 109.85053 * 262.73168 * 16 15 13 44 44 H 1.08997 * 110.02635 * 141.64965 * 16 15 13 45 45 H 0.97006 * 119.99920 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.37196 * 217.03735 * 26 17 16 47 47 H 1.09001 * 110.37302 * 94.70838 * 26 17 16 48 48 H 1.08996 * 109.58609 * 353.41622 * 27 7 5 49 49 H 1.09003 * 109.58323 * 113.84204 * 27 7 5 50 50 H 1.08002 * 120.17125 * 179.72287 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3836 0.0000 6 8 4.0599 3.3434 0.6558 7 7 5.5472 2.4449 -0.7269 8 6 5.9224 1.3428 -1.6230 9 6 6.1721 1.9096 -3.0241 10 6 7.2097 3.0313 -2.9388 11 6 6.6748 4.1569 -2.0506 12 1 5.7382 4.5320 -2.4632 13 6 7.6990 5.2921 -1.9924 14 1 8.6491 4.9381 -1.5925 15 6 7.1578 6.4874 -1.1643 16 6 7.9206 7.6915 -1.7573 17 7 8.3624 7.3075 -3.1059 18 6 9.0914 8.0911 -3.9602 19 1 9.2955 7.7501 -4.9645 20 6 9.5681 9.3236 -3.5353 21 7 9.2053 9.8013 -2.3639 22 14 10.7248 10.3042 -4.6264 23 1 9.9421 11.2801 -5.4265 24 1 11.7057 11.0308 -3.7809 25 1 11.4459 9.3811 -5.5391 26 6 7.8900 5.9395 -3.3867 27 6 6.4279 3.6180 -0.6427 28 6 4.2016 -0.1154 -0.0072 29 7 3.4483 -1.1980 -0.0013 30 7 2.1668 -1.1419 -0.0007 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 1.6782 2.1452 0.0004 35 1 6.8305 0.8654 -1.2549 36 1 5.1138 0.6128 -1.6629 37 1 6.5439 1.1188 -3.6757 38 1 5.2401 2.3054 -3.4278 39 1 8.1332 2.6399 -2.5123 40 1 7.4071 3.4200 -3.9378 41 1 6.0837 6.6022 -1.3094 42 1 7.3942 6.3629 -0.1076 43 1 8.7854 7.9241 -1.1360 44 1 7.2623 8.5583 -1.8157 45 1 9.5382 10.6628 -2.0672 46 1 8.6365 5.3906 -3.9607 47 1 6.9424 5.9683 -3.9246 48 1 5.9528 4.3888 -0.0359 49 1 7.3781 3.3299 -0.1929 50 1 5.2781 -0.2031 -0.0124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961138945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:39 Heat of formation + Delta-G solvation = 46.819737 kcal Electronic energy + Delta-G solvation = -30246.836419 eV Core-core repulsion = 26275.050036 eV Total energy + Delta-G solvation = -3971.786383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83744 -40.30531 -38.42766 -36.85912 -34.61540 -34.18173 -33.20935 -32.44156 -31.17203 -29.00089 -28.82569 -27.57551 -26.23089 -25.32253 -24.41735 -23.74592 -22.94378 -21.23599 -19.89022 -19.63574 -19.55563 -18.54977 -17.34024 -17.07455 -16.79859 -16.44268 -15.81193 -15.45633 -14.89603 -14.79666 -14.56684 -14.44593 -14.09744 -13.93955 -13.82763 -13.68551 -13.45404 -13.23272 -13.16653 -12.90319 -12.35539 -12.23211 -12.06122 -11.81243 -11.49380 -11.34966 -11.11927 -11.09690 -10.91224 -10.84239 -10.82230 -10.65955 -10.60138 -10.17820 -10.10978 -10.04853 -9.93271 -9.81236 -9.69429 -9.61888 -8.92842 -8.55514 -6.80453 -5.70886 -3.02972 -0.06014 0.33628 2.21897 2.48261 3.04123 3.39852 3.45223 3.46499 3.47403 3.73093 3.89086 4.02716 4.32891 4.40403 4.50663 4.61200 4.65766 4.66890 4.81572 4.87214 5.01383 5.03268 5.08879 5.17255 5.31553 5.33280 5.44755 5.45620 5.49238 5.50669 5.58382 5.65281 5.67143 5.69182 5.86108 5.91675 5.94534 5.98704 6.15830 6.22701 6.33457 6.41628 6.57591 6.59169 6.74453 6.95092 6.98075 7.58300 7.66037 7.67341 7.85168 8.16932 8.28411 9.23662 9.84704 10.51658 11.41122 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.002087 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.759366 B =13412.830998 C =13857.787135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.071 3.929 3 C -0.065 4.065 4 C -0.120 4.120 5 C 0.561 3.439 6 O -0.520 6.520 7 N -0.598 5.598 8 C 0.093 3.907 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.087 4.087 12 H 0.074 0.926 13 C -0.094 4.094 14 H 0.075 0.925 15 C -0.141 4.141 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.145 3.855 27 C 0.117 3.883 28 C 0.058 3.942 29 N -0.237 5.237 30 N -0.233 5.233 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.252 0.748 46 H 0.037 0.963 47 H 0.015 0.985 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 -22.127 4.092 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.134 4.134 5 C 0.347 3.653 6 O -0.395 6.395 7 N -0.330 5.330 8 C -0.029 4.029 9 C -0.172 4.172 10 C -0.154 4.154 11 C -0.107 4.107 12 H 0.092 0.908 13 C -0.114 4.114 14 H 0.093 0.907 15 C -0.179 4.179 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.019 3.981 27 C -0.005 4.005 28 C -0.107 4.107 29 N -0.077 5.077 30 N -0.077 5.077 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.178 0.822 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.033 0.967 48 H 0.117 0.883 49 H 0.092 0.908 50 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.220 -23.048 4.462 26.943 hybrid contribution 0.828 2.210 -0.605 2.436 sum -12.392 -20.838 3.858 24.549 Atomic orbital electron populations 1.20739 0.86727 1.04536 1.04057 1.22959 0.99490 0.89779 0.95172 1.22467 0.92923 1.00754 0.93344 1.21252 0.95323 0.95588 1.01228 1.17960 0.80633 0.86398 0.80350 1.90841 1.69617 1.36393 1.42696 1.48051 1.22244 1.20535 1.42207 1.22196 1.01232 0.88932 0.90575 1.21932 1.00592 0.99252 0.95466 1.21615 0.97849 0.94868 1.01100 1.21398 0.99731 0.95322 0.94218 0.90759 1.22310 0.97187 0.93355 0.98598 0.90653 1.22937 0.99677 0.96850 0.98421 1.21146 0.96279 0.91880 0.85541 1.44495 1.62941 1.11029 1.14854 1.19040 1.24681 0.98188 0.93773 0.90539 1.24826 1.00680 0.97801 0.97170 1.69986 1.47315 1.19390 1.20007 0.86145 0.80730 0.79919 0.79264 1.21720 1.21648 1.20656 1.21514 0.96400 0.86914 0.93277 1.21779 0.93292 0.86932 0.98455 1.24710 1.02868 0.88553 0.94558 1.73087 0.99228 1.26605 1.08744 1.72837 1.01886 1.24941 1.07987 0.89419 0.89541 0.89816 0.82219 0.90293 0.89814 0.90381 0.91466 0.91531 0.90724 0.92565 0.92323 0.93590 0.94318 0.93794 0.94518 0.96730 0.88310 0.90848 0.80298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.00 0.37 -0.11 16 2 C 0.07 0.57 6.86 -82.46 -0.57 0.01 16 3 C -0.07 -0.55 9.53 -38.78 -0.37 -0.92 16 4 C -0.12 -1.14 5.21 -104.57 -0.55 -1.68 16 5 C 0.56 6.47 7.40 -12.20 -0.09 6.38 16 6 O -0.52 -7.86 16.36 5.35 0.09 -7.77 16 7 N -0.60 -6.05 2.98 -174.03 -0.52 -6.56 16 8 C 0.09 0.68 4.90 -3.72 -0.02 0.66 16 9 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 10 C -0.12 -1.18 5.02 -26.69 -0.13 -1.32 16 11 C -0.09 -1.08 1.82 -90.72 -0.17 -1.25 16 12 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 13 C -0.09 -1.52 2.56 -88.47 -0.23 -1.75 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.14 -2.58 5.55 -24.87 -0.14 -2.72 16 16 C 0.18 4.30 5.39 -3.04 -0.02 4.29 16 17 N -0.61 -15.51 3.39 -170.05 -0.58 -16.08 16 18 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 19 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 20 C -0.01 -0.24 5.48 -17.44 -0.10 -0.34 16 21 N -0.92 -27.29 10.36 55.49 0.57 -26.72 16 22 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 2.90 5.80 -2.53 -0.01 2.88 16 27 C 0.12 1.35 5.42 -3.93 -0.02 1.33 16 28 C 0.06 0.50 8.72 -16.95 -0.15 0.35 16 29 N -0.24 -2.48 11.49 30.78 0.35 -2.13 16 30 N -0.23 -2.43 11.40 33.58 0.38 -2.05 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.08 0.55 4.64 -51.93 -0.24 0.31 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 41 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 1.24 7.29 -51.93 -0.38 0.86 16 44 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.04 0.71 8.03 -51.93 -0.42 0.29 16 47 H 0.02 0.30 8.03 -51.93 -0.42 -0.12 16 48 H 0.10 1.35 6.45 -51.93 -0.34 1.01 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.18 1.10 6.46 -52.49 -0.34 0.76 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -34.06 390.63 -9.27 -43.32 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.94 Total: -3.07 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.50 Total: -1.97 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.22 Total: -53.54 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.06 -9.27 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961138945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.144 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds