Wall clock time and date at job start Wed Apr 1 2020 03:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38549 * 120.01160 * 2 1 4 4 C 1.40076 * 117.81415 * 180.02562 * 3 2 1 5 5 C 1.48138 * 121.14520 * 180.02562 * 4 3 2 6 6 O 1.21518 * 119.99589 * 38.49076 * 5 4 3 7 7 N 1.34773 * 120.00083 * 218.49292 * 5 4 3 8 8 C 1.46921 * 120.63454 * 5.82138 * 7 5 4 9 9 C 1.53189 * 108.77970 * 126.37212 * 8 7 5 10 10 C 1.53039 * 109.31190 * 54.63347 * 9 8 7 11 11 C 1.53033 * 109.54187 * 298.63852 * 10 9 8 12 12 H 1.09006 * 109.49561 * 301.41489 * 11 10 9 13 13 C 1.53002 * 109.50067 * 181.31669 * 11 10 9 14 14 H 1.08994 * 110.88519 * 300.69936 * 13 11 10 15 15 C 1.55157 * 111.00249 * 176.81963 * 13 11 10 16 16 C 1.54375 * 102.91743 * 206.44951 * 15 13 11 17 17 N 1.47019 * 107.28510 * 22.14251 * 16 15 13 18 18 C 1.36946 * 125.64545 * 181.05083 * 17 16 15 19 19 H 1.08001 * 119.99758 * 185.23822 * 18 17 16 20 20 C 1.38807 * 119.99703 * 5.24726 * 18 17 16 21 21 N 1.31611 * 120.00269 * 352.93950 * 20 18 17 22 22 Si 1.86808 * 119.99690 * 172.94464 * 20 18 17 23 23 H 1.48499 * 109.47094 * 94.98260 * 22 20 18 24 24 H 1.48493 * 109.46993 * 214.98590 * 22 20 18 25 25 H 1.48501 * 109.46854 * 334.98328 * 22 20 18 26 26 C 1.47419 * 108.70836 * 1.09073 * 17 16 15 27 27 C 1.46932 * 120.62791 * 185.54374 * 7 5 4 28 28 C 1.39765 * 117.70791 * 0.28499 * 4 3 2 29 29 N 1.31894 * 119.65602 * 359.42788 * 28 4 3 30 30 N 1.28273 * 122.32694 * 0.59736 * 29 28 4 31 31 H 1.08993 * 109.47687 * 90.00010 * 1 2 3 32 32 H 1.09008 * 109.46782 * 209.99630 * 1 2 3 33 33 H 1.08999 * 109.47137 * 329.99027 * 1 2 3 34 34 H 1.07992 * 121.09444 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.59007 * 246.16161 * 8 7 5 36 36 H 1.09007 * 109.58583 * 6.58384 * 8 7 5 37 37 H 1.09003 * 109.50132 * 174.59057 * 9 8 7 38 38 H 1.09002 * 109.49217 * 294.65072 * 9 8 7 39 39 H 1.08997 * 109.45851 * 58.66182 * 10 9 8 40 40 H 1.09000 * 109.45701 * 178.63037 * 10 9 8 41 41 H 1.08991 * 110.72264 * 324.78722 * 15 13 11 42 42 H 1.09002 * 110.71846 * 88.06169 * 15 13 11 43 43 H 1.08999 * 109.85053 * 262.73168 * 16 15 13 44 44 H 1.08997 * 110.02635 * 141.64965 * 16 15 13 45 45 H 0.97006 * 119.99920 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.37196 * 217.03735 * 26 17 16 47 47 H 1.09001 * 110.37302 * 94.70838 * 26 17 16 48 48 H 1.08996 * 109.58609 * 353.41622 * 27 7 5 49 49 H 1.09003 * 109.58323 * 113.84204 * 27 7 5 50 50 H 1.08002 * 120.17125 * 179.72287 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3836 0.0000 6 8 4.0599 3.3434 0.6558 7 7 5.5472 2.4449 -0.7269 8 6 5.9224 1.3428 -1.6230 9 6 6.1721 1.9096 -3.0241 10 6 7.2097 3.0313 -2.9388 11 6 6.6748 4.1569 -2.0506 12 1 5.7382 4.5320 -2.4632 13 6 7.6990 5.2921 -1.9924 14 1 8.6491 4.9381 -1.5925 15 6 7.1578 6.4874 -1.1643 16 6 7.9206 7.6915 -1.7573 17 7 8.3624 7.3075 -3.1059 18 6 9.0914 8.0911 -3.9602 19 1 9.2955 7.7501 -4.9645 20 6 9.5681 9.3236 -3.5353 21 7 9.2053 9.8013 -2.3639 22 14 10.7248 10.3042 -4.6264 23 1 9.9421 11.2801 -5.4265 24 1 11.7057 11.0308 -3.7809 25 1 11.4459 9.3811 -5.5391 26 6 7.8900 5.9395 -3.3867 27 6 6.4279 3.6180 -0.6427 28 6 4.2016 -0.1154 -0.0072 29 7 3.4483 -1.1980 -0.0013 30 7 2.1668 -1.1419 -0.0007 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 1.6782 2.1452 0.0004 35 1 6.8305 0.8654 -1.2549 36 1 5.1138 0.6128 -1.6629 37 1 6.5439 1.1188 -3.6757 38 1 5.2401 2.3054 -3.4278 39 1 8.1332 2.6399 -2.5123 40 1 7.4071 3.4200 -3.9378 41 1 6.0837 6.6022 -1.3094 42 1 7.3942 6.3629 -0.1076 43 1 8.7854 7.9241 -1.1360 44 1 7.2623 8.5583 -1.8157 45 1 9.5382 10.6628 -2.0672 46 1 8.6365 5.3906 -3.9607 47 1 6.9424 5.9683 -3.9246 48 1 5.9528 4.3888 -0.0359 49 1 7.3781 3.3299 -0.1929 50 1 5.2781 -0.2031 -0.0124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961138945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:38 Heat of formation + Delta-G solvation = 25.462496 kcal Electronic energy + Delta-G solvation = -30247.762538 eV Core-core repulsion = 26275.050036 eV Total energy + Delta-G solvation = -3972.712503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54393 -41.16192 -39.69160 -38.12105 -35.55115 -35.00615 -34.41241 -33.49752 -32.54548 -30.69297 -29.36388 -29.01305 -27.10684 -26.65333 -25.64712 -24.51977 -23.93447 -22.33449 -21.64192 -20.88265 -20.42772 -19.28700 -18.82809 -18.01742 -17.73272 -17.30596 -16.94428 -16.56880 -16.31813 -15.85752 -15.59555 -15.49548 -15.45872 -14.91487 -14.61665 -14.49497 -14.26788 -14.07626 -13.98168 -13.88394 -13.80674 -13.54781 -13.30744 -13.21688 -12.86256 -12.74220 -12.34426 -12.20412 -12.17775 -12.01617 -11.99266 -11.78409 -11.75143 -11.72916 -11.40001 -11.36185 -11.27485 -11.04497 -10.80122 -10.69093 -10.63152 -9.77970 -8.89387 -7.86476 -5.20927 -0.76578 -0.27815 1.38606 1.44555 1.46371 1.55981 1.68415 2.36488 2.49114 2.88003 3.02606 3.27631 3.31396 3.39994 3.56067 3.69561 3.72168 3.81834 3.86622 4.01254 4.10146 4.14027 4.15690 4.29005 4.38808 4.39890 4.51724 4.56125 4.61167 4.70775 4.73939 4.74598 4.80669 4.82826 4.86750 4.92252 4.94601 4.97530 5.06105 5.13734 5.15424 5.24979 5.34363 5.37393 5.43703 5.46325 5.55641 5.66621 5.77519 6.14763 6.20011 6.81421 7.09655 7.50601 7.78449 8.43790 9.24632 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.002087 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.759366 B =13412.830998 C =13857.787135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.074 3.926 3 C -0.066 4.066 4 C -0.128 4.128 5 C 0.561 3.439 6 O -0.564 6.564 7 N -0.593 5.593 8 C 0.090 3.910 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.075 4.075 12 H 0.059 0.941 13 C -0.075 4.075 14 H 0.083 0.917 15 C -0.127 4.127 16 C 0.183 3.817 17 N -0.630 5.630 18 C -0.242 4.242 19 H 0.084 0.916 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.978 3.022 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.265 1.265 26 C 0.141 3.859 27 C 0.120 3.880 28 C 0.066 3.934 29 N -0.259 5.259 30 N -0.258 5.258 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.171 0.829 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.012 0.988 44 H -0.004 1.004 45 H 0.246 0.754 46 H 0.047 0.953 47 H 0.016 0.984 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 -24.846 3.298 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.096 4.096 4 C -0.142 4.142 5 C 0.349 3.651 6 O -0.443 6.443 7 N -0.323 5.323 8 C -0.031 4.031 9 C -0.166 4.166 10 C -0.152 4.152 11 C -0.094 4.094 12 H 0.077 0.923 13 C -0.095 4.095 14 H 0.101 0.899 15 C -0.165 4.165 16 C 0.058 3.942 17 N -0.357 5.357 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.190 1.190 26 C 0.016 3.984 27 C -0.002 4.002 28 C -0.099 4.099 29 N -0.098 5.098 30 N -0.101 5.101 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.188 0.812 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.030 0.970 44 H 0.014 0.986 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.179 -25.846 3.629 29.238 hybrid contribution 0.757 3.069 -0.399 3.186 sum -12.422 -22.777 3.230 26.145 Atomic orbital electron populations 1.20880 0.84389 1.05517 1.05213 1.23395 1.00935 0.88914 0.93922 1.22705 0.92844 1.01451 0.92553 1.21150 0.95594 0.95042 1.02452 1.18214 0.80743 0.86418 0.79772 1.90821 1.70742 1.38069 1.44687 1.48088 1.21494 1.20658 1.42103 1.22467 1.02900 0.88119 0.89641 1.21901 0.99414 0.99060 0.96264 1.21598 0.99110 0.94583 0.99916 1.21226 0.97785 0.94861 0.95571 0.92288 1.22175 0.98592 0.93435 0.95268 0.89859 1.22776 0.98976 0.95221 0.99507 1.20904 0.94664 0.93175 0.85440 1.44852 1.62824 1.13144 1.14848 1.19474 1.24421 0.98656 0.94529 0.89862 1.25718 1.02584 0.99196 0.98792 1.70221 1.48537 1.19482 1.21881 0.85066 0.78411 0.78362 0.77534 1.21560 1.22066 1.18957 1.21708 0.96257 0.84683 0.95712 1.21617 0.94098 0.87218 0.97256 1.24985 1.03800 0.87581 0.93510 1.73035 0.99570 1.27449 1.09753 1.72774 1.02192 1.26154 1.08965 0.88022 0.89271 0.88118 0.81197 0.87473 0.88721 0.87844 0.92536 0.90027 0.91615 0.92269 0.90432 0.97017 0.98577 0.94483 0.93484 0.96649 0.90593 0.89034 0.77881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.19 71.24 0.73 -0.02 16 2 C 0.07 1.08 6.86 42.62 0.29 1.38 16 3 C -0.07 -1.02 9.53 22.79 0.22 -0.80 16 4 C -0.13 -2.22 5.21 -19.83 -0.10 -2.33 16 5 C 0.56 12.20 7.40 86.87 0.64 12.84 16 6 O -0.56 -16.94 16.36 -3.77 -0.06 -17.00 16 7 N -0.59 -10.59 2.98 -822.81 -2.45 -13.04 16 8 C 0.09 0.98 4.90 86.36 0.42 1.40 16 9 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 10 C -0.11 -1.96 5.02 30.62 0.15 -1.81 16 11 C -0.07 -1.72 1.82 -10.86 -0.02 -1.74 16 12 H 0.06 1.56 8.13 -2.38 -0.02 1.55 16 13 C -0.07 -2.32 2.56 -9.40 -0.02 -2.35 16 14 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 15 C -0.13 -4.68 5.55 31.80 0.18 -4.51 16 16 C 0.18 9.35 5.39 86.75 0.47 9.82 16 17 N -0.63 -32.87 3.39 -691.91 -2.35 -35.22 16 18 C -0.24 -13.75 10.27 84.03 0.86 -12.88 16 19 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 20 C -0.07 -4.07 5.48 84.86 0.46 -3.61 16 21 N -0.95 -58.81 10.36 21.65 0.22 -58.59 16 22 Si 0.98 46.28 29.56 68.60 2.03 48.30 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.14 5.56 5.80 86.86 0.50 6.06 16 27 C 0.12 2.54 5.42 86.22 0.47 3.01 16 28 C 0.07 1.00 8.72 85.05 0.74 1.74 16 29 N -0.26 -5.00 11.49 -56.52 -0.65 -5.65 16 30 N -0.26 -5.03 11.40 -47.69 -0.54 -5.58 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.10 0.40 8.09 -2.39 -0.02 0.38 16 34 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.11 0.66 8.12 -2.39 -0.02 0.64 16 36 H 0.09 0.89 4.64 -2.38 -0.01 0.88 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.27 7.32 -2.39 -0.02 1.26 16 41 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 42 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.01 0.66 7.29 -2.39 -0.02 0.64 16 44 H 0.00 -0.23 7.60 -2.39 -0.02 -0.25 16 45 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 46 H 0.05 1.76 8.03 -2.39 -0.02 1.74 16 47 H 0.02 0.62 8.03 -2.39 -0.02 0.60 16 48 H 0.08 2.01 6.45 -2.39 -0.02 1.99 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.20 1.81 6.46 -2.91 -0.02 1.79 16 Total: -1.00 -77.80 390.63 3.31 -74.49 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.93 Total: 7.48 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.18 Total: 4.80 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.77 Total: -118.07 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.06 Total: -17.00 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -77.80 3.31 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961138945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.954 kcal (2) G-P(sol) polarization free energy of solvation -77.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds