Wall clock time and date at job start Wed Apr 1 2020 03:37:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 N 1.31916 * 120.17823 * 2 1
4 4 N 1.28274 * 122.33157 * 179.97438 * 3 2 1
5 5 C 1.31914 * 122.51493 * 359.97438 * 4 3 2
6 6 C 1.38510 * 119.97037 * 359.72094 * 5 4 3
7 7 C 1.39734 * 120.16700 * 179.97438 * 2 1 3
8 8 C 1.48132 * 121.14715 * 0.02721 * 7 2 1
9 9 O 1.21515 * 120.00050 * 306.47610 * 8 7 2
10 10 N 1.34779 * 119.99938 * 126.47495 * 8 7 2
11 11 C 1.46929 * 120.63017 * 354.23115 * 10 8 7
12 12 C 1.53190 * 108.77449 * 233.59130 * 11 10 8
13 13 C 1.53038 * 109.31209 * 305.36138 * 12 11 10
14 14 C 1.53045 * 109.53682 * 61.36978 * 13 12 11
15 15 H 1.09004 * 109.52477 * 58.60178 * 14 13 12
16 16 C 1.52997 * 109.49808 * 178.68358 * 14 13 12
17 17 H 1.08999 * 110.78184 * 56.59908 * 16 14 13
18 18 C 1.55165 * 110.72105 * 179.83704 * 16 14 13
19 19 C 1.54906 * 101.58284 * 153.86584 * 18 16 14
20 20 N 1.47424 * 104.83279 * 322.98990 * 19 18 16
21 21 C 1.36936 * 125.64968 * 204.09093 * 20 19 18
22 22 H 1.08009 * 119.99864 * 180.02562 * 21 20 19
23 23 C 1.38806 * 119.99949 * 359.75452 * 21 20 19
24 24 N 1.31617 * 119.99953 * 0.27076 * 23 21 20
25 25 Si 1.86799 * 119.99737 * 180.27445 * 23 21 20
26 26 H 1.48503 * 109.47530 * 59.99924 * 25 23 21
27 27 H 1.48508 * 109.46958 * 179.97438 * 25 23 21
28 28 H 1.48498 * 109.47305 * 299.99562 * 25 23 21
29 29 C 1.47023 * 108.70098 * 24.35815 * 20 19 18
30 30 C 1.46926 * 120.63056 * 174.21372 * 10 8 7
31 31 H 1.09001 * 109.47789 * 274.89638 * 1 2 3
32 32 H 1.09003 * 109.46871 * 34.89910 * 1 2 3
33 33 H 1.09002 * 109.47336 * 154.89007 * 1 2 3
34 34 H 1.08006 * 120.01821 * 180.02562 * 5 4 3
35 35 H 1.07996 * 121.09204 * 180.31067 * 6 5 4
36 36 H 1.08997 * 109.58676 * 353.37536 * 11 10 8
37 37 H 1.08990 * 109.58641 * 113.65962 * 11 10 8
38 38 H 1.09000 * 109.50066 * 65.31691 * 12 11 10
39 39 H 1.09002 * 109.49408 * 185.38506 * 12 11 10
40 40 H 1.08997 * 109.46383 * 301.35170 * 13 12 11
41 41 H 1.09000 * 109.46215 * 181.38471 * 13 12 11
42 42 H 1.08996 * 111.00416 * 35.78954 * 18 16 14
43 43 H 1.09006 * 111.03425 * 271.95672 * 18 16 14
44 44 H 1.09001 * 110.36678 * 204.15777 * 19 18 16
45 45 H 1.09001 * 110.46007 * 81.87466 * 19 18 16
46 46 H 0.96999 * 119.99947 * 180.02562 * 24 23 21
47 47 H 1.09004 * 109.88668 * 118.13212 * 29 20 19
48 48 H 1.08999 * 109.88508 * 239.29377 * 29 20 19
49 49 H 1.08999 * 109.58473 * 6.62370 * 30 10 8
50 50 H 1.08999 * 109.58448 * 246.20087 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1701 1.1404 0.0000
4 7 3.4519 1.1886 0.0005
5 6 4.2023 0.1036 0.0015
6 6 3.6090 -1.1480 0.0080
7 6 2.2091 -1.2081 0.0005
8 6 1.4981 -2.5076 0.0005
9 8 0.6573 -2.7401 0.8464
10 7 1.7837 -3.4320 -0.9378
11 6 2.7039 -3.1204 -2.0400
12 6 2.0071 -3.4344 -3.3677
13 6 1.5148 -4.8833 -3.3506
14 6 0.5015 -5.0663 -2.2183
15 1 -0.3333 -4.3802 -2.3620
16 6 -0.0146 -6.5065 -2.2226
17 1 0.8109 -7.2134 -2.1384
18 6 -1.0427 -6.7248 -1.0810
19 6 -1.8938 -7.8885 -1.6473
20 7 -1.9887 -7.6179 -3.0934
21 6 -2.9780 -8.0680 -3.9264
22 1 -2.9573 -7.8140 -4.9760
23 6 -4.0043 -8.8554 -3.4230
24 7 -4.0294 -9.1650 -2.1440
25 14 -5.3495 -9.4758 -4.5608
26 1 -4.7471 -10.3121 -5.6299
27 1 -6.3189 -10.2894 -3.7838
28 1 -6.0519 -8.3197 -5.1734
29 6 -0.8418 -6.7899 -3.4942
30 6 1.1812 -4.7707 -0.8776
31 1 -0.3635 0.0877 1.0239
32 1 -0.3633 0.8429 -0.5880
33 1 -0.3634 -0.9305 -0.4361
34 1 5.2788 0.1912 0.0023
35 1 4.2058 -2.0480 0.0139
36 1 2.9685 -2.0635 -2.0073
37 1 3.6052 -3.7258 -1.9458
38 1 1.1585 -2.7633 -3.5009
39 1 2.7108 -3.2985 -4.1889
40 1 2.3605 -5.5524 -3.1926
41 1 1.0402 -5.1169 -4.3036
42 1 -1.6516 -5.8338 -0.9281
43 1 -0.5447 -7.0185 -0.1569
44 1 -2.8858 -7.8879 -1.1955
45 1 -1.3984 -8.8435 -1.4719
46 1 -4.7464 -9.7155 -1.7923
47 1 -0.2336 -7.3265 -4.2225
48 1 -1.1937 -5.8512 -3.9221
49 1 0.4412 -4.8027 -0.0779
50 1 1.9574 -5.5126 -0.6899
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000961199473.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:37:55
Heat of formation + Delta-G solvation = 45.047880 kcal
Electronic energy + Delta-G solvation = -30687.951287 eV
Core-core repulsion = 26716.088071 eV
Total energy + Delta-G solvation = -3971.863217 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.80581 -40.26663 -38.43894 -36.83268 -34.37977 -34.12406 -33.26642 -32.44073
-31.16955 -29.00464 -28.76792 -27.47062 -26.44208 -25.15672 -24.31262 -23.49311
-22.91292 -21.41171 -20.00493 -19.78081 -19.43234 -18.29674 -17.72121 -16.84282
-16.69546 -16.26017 -15.76322 -15.42458 -15.10305 -14.84001 -14.58340 -14.53178
-14.04163 -13.90353 -13.80037 -13.62353 -13.30028 -13.24215 -13.13600 -12.62453
-12.46638 -12.26783 -11.92843 -11.58745 -11.42469 -11.41098 -11.18851 -11.12928
-10.95533 -10.83345 -10.81212 -10.64532 -10.51766 -10.17939 -10.12997 -10.05260
-9.96915 -9.82937 -9.71274 -9.42992 -8.92485 -8.62987 -6.80974 -5.63539
-3.05222 0.00125 0.39275 2.16224 2.50839 3.05376 3.40656 3.44727
3.46265 3.54337 3.77833 3.89287 4.04395 4.30495 4.42037 4.49885
4.64099 4.69577 4.75993 4.84231 5.00255 5.01223 5.03550 5.11040
5.29086 5.29395 5.44583 5.46244 5.49295 5.53152 5.55338 5.59573
5.63486 5.69131 5.82575 5.84980 5.93287 5.95070 5.98938 6.16025
6.21422 6.37400 6.40792 6.61229 6.64057 6.77175 6.95763 6.98426
7.54673 7.64126 7.68094 7.88630 8.22200 8.39166 9.24058 9.85368
10.50708 11.40207
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.021684 B = 0.002316 C = 0.002252
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.980453 B =12088.722822 C =12431.021750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.116 3.884
3 N -0.241 5.241
4 N -0.227 5.227
5 C 0.030 3.970
6 C -0.085 4.085
7 C -0.120 4.120
8 C 0.563 3.437
9 O -0.514 6.514
10 N -0.599 5.599
11 C 0.102 3.898
12 C -0.134 4.134
13 C -0.116 4.116
14 C -0.087 4.087
15 H 0.076 0.924
16 C -0.092 4.092
17 H 0.070 0.930
18 C -0.141 4.141
19 C 0.152 3.848
20 N -0.605 5.605
21 C -0.223 4.223
22 H 0.076 0.924
23 C -0.012 4.012
24 N -0.922 5.922
25 Si 0.914 3.086
26 H -0.286 1.286
27 H -0.290 1.290
28 H -0.285 1.285
29 C 0.145 3.855
30 C 0.117 3.883
31 H 0.094 0.906
32 H 0.086 0.914
33 H 0.082 0.918
34 H 0.179 0.821
35 H 0.156 0.844
36 H 0.077 0.923
37 H 0.075 0.925
38 H 0.068 0.932
39 H 0.076 0.924
40 H 0.064 0.936
41 H 0.074 0.926
42 H 0.060 0.940
43 H 0.056 0.944
44 H 0.104 0.896
45 H 0.010 0.990
46 H 0.252 0.748
47 H 0.018 0.982
48 H 0.021 0.979
49 H 0.100 0.900
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.226 15.707 2.743 24.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.029 4.029
3 N -0.084 5.084
4 N -0.069 5.069
5 C -0.134 4.134
6 C -0.114 4.114
7 C -0.135 4.135
8 C 0.348 3.652
9 O -0.389 6.389
10 N -0.332 5.332
11 C -0.020 4.020
12 C -0.173 4.173
13 C -0.154 4.154
14 C -0.106 4.106
15 H 0.095 0.905
16 C -0.112 4.112
17 H 0.089 0.911
18 C -0.179 4.179
19 C 0.027 3.973
20 N -0.331 5.331
21 C -0.351 4.351
22 H 0.093 0.907
23 C -0.207 4.207
24 N -0.571 5.571
25 Si 0.744 3.256
26 H -0.213 1.213
27 H -0.216 1.216
28 H -0.212 1.212
29 C 0.019 3.981
30 C -0.004 4.004
31 H 0.112 0.888
32 H 0.105 0.895
33 H 0.101 0.899
34 H 0.196 0.804
35 H 0.174 0.826
36 H 0.095 0.905
37 H 0.093 0.907
38 H 0.086 0.914
39 H 0.095 0.905
40 H 0.083 0.917
41 H 0.092 0.908
42 H 0.079 0.921
43 H 0.075 0.925
44 H 0.122 0.878
45 H 0.028 0.972
46 H 0.063 0.937
47 H 0.035 0.965
48 H 0.039 0.961
49 H 0.118 0.882
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 18.506 17.097 3.206 25.398
hybrid contribution -0.290 -2.040 -0.682 2.171
sum 18.216 15.056 2.524 23.767
Atomic orbital electron populations
1.20793 0.86503 1.04330 1.04679 1.23070 0.99476 0.88600 0.91715
1.73069 1.01538 1.23869 1.09928 1.72893 0.99567 1.27766 1.06629
1.24301 1.02785 0.89153 0.97128 1.22646 0.93678 1.00587 0.94514
1.21126 0.94935 0.95675 1.01783 1.17952 0.82366 0.82797 0.82074
1.90856 1.31736 1.78558 1.37785 1.48091 1.46034 1.13662 1.25380
1.21910 0.92427 1.01158 0.86547 1.21925 1.00909 0.98361 0.96067
1.21617 0.98922 0.95162 0.99703 1.21507 0.97770 0.97920 0.93414
0.90544 1.22133 0.97662 0.93637 0.97757 0.91111 1.23073 0.97498
1.01191 0.96164 1.21902 1.00131 0.91366 0.83877 1.44512 1.23982
1.59214 1.05397 1.19021 1.00047 1.25235 0.90820 0.90662 1.24786
0.99154 1.00414 0.96372 1.69800 1.33901 1.42012 1.11378 0.86165
0.81513 0.78455 0.79433 1.21265 1.21566 1.21175 1.21266 0.89073
0.94076 0.93690 1.21860 0.98146 0.80803 0.99634 0.88762 0.89506
0.89912 0.80375 0.82613 0.90454 0.90702 0.91372 0.90519 0.91691
0.90777 0.92125 0.92508 0.87783 0.97201 0.93706 0.96456 0.96105
0.88202 0.91013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.02 9.53 36.00 0.34 -0.68 16
2 C 0.12 1.24 6.90 -82.00 -0.57 0.67 16
3 N -0.24 -2.81 11.42 33.81 0.39 -2.42 16
4 N -0.23 -2.38 11.48 30.53 0.35 -2.03 16
5 C 0.03 0.21 11.30 -17.42 -0.20 0.01 16
6 C -0.08 -0.57 8.03 -38.78 -0.31 -0.89 16
7 C -0.12 -1.17 4.63 -104.57 -0.48 -1.66 16
8 C 0.56 6.49 6.21 -12.20 -0.08 6.41 16
9 O -0.51 -7.74 15.46 5.35 0.08 -7.66 16
10 N -0.60 -5.98 2.97 -173.78 -0.52 -6.50 16
11 C 0.10 0.73 5.66 -3.71 -0.02 0.71 16
12 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16
13 C -0.12 -1.17 5.03 -26.69 -0.13 -1.31 16
14 C -0.09 -1.09 1.74 -90.50 -0.16 -1.25 16
15 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16
16 C -0.09 -1.48 2.48 -88.78 -0.22 -1.70 16
17 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
18 C -0.14 -2.60 5.49 -24.58 -0.13 -2.74 16
19 C 0.15 3.69 5.88 -2.53 -0.01 3.68 16
20 N -0.61 -15.49 3.39 -170.07 -0.58 -16.07 16
21 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16
22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16
23 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16
24 N -0.92 -27.10 10.09 55.49 0.56 -26.54 16
25 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16
26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
29 C 0.15 2.92 5.99 -3.06 -0.02 2.90 16
30 C 0.12 1.34 5.39 -3.71 -0.02 1.32 16
31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.08 0.87 6.66 -51.93 -0.35 0.53 16
34 H 0.18 0.54 8.06 -52.48 -0.42 0.11 16
35 H 0.16 0.62 7.85 -52.49 -0.41 0.20 16
36 H 0.08 0.49 5.39 -51.93 -0.28 0.21 16
37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
41 H 0.07 0.82 7.46 -51.93 -0.39 0.44 16
42 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16
43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
44 H 0.10 2.87 5.88 -51.93 -0.31 2.57 16
45 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16
46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
48 H 0.02 0.42 7.76 -51.93 -0.40 0.02 16
49 H 0.10 1.36 6.36 -51.93 -0.33 1.03 16
50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
LS Contribution 389.03 15.07 5.86 5.86
Total: -1.00 -33.65 389.03 -9.22 -42.87
By element:
Atomic # 1 Polarization: 5.83 SS G_CDS: -7.92 Total: -2.09 kcal
Atomic # 6 Polarization: -0.14 SS G_CDS: -2.42 Total: -2.56 kcal
Atomic # 7 Polarization: -53.76 SS G_CDS: 0.20 Total: -53.56 kcal
Atomic # 8 Polarization: -7.74 SS G_CDS: 0.08 Total: -7.66 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -33.65 -9.22 -42.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000961199473.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.919 kcal
(2) G-P(sol) polarization free energy of solvation -33.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds