Wall clock time and date at job start Wed Apr 1 2020 03:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31922 * 120.17344 * 2 1 4 4 N 1.28273 * 122.32705 * 180.27327 * 3 2 1 5 5 C 1.31920 * 122.51647 * 359.72765 * 4 3 2 6 6 C 1.38507 * 119.96483 * 0.02562 * 5 4 3 7 7 C 1.39726 * 120.17036 * 179.74169 * 2 1 3 8 8 C 1.48140 * 121.14685 * 0.02562 * 7 2 1 9 9 O 1.21518 * 119.99666 * 54.08258 * 8 7 2 10 10 N 1.34772 * 119.99991 * 234.07784 * 8 7 2 11 11 C 1.46924 * 120.63086 * 355.90366 * 10 8 7 12 12 C 1.53201 * 108.77347 * 126.41684 * 11 10 8 13 13 C 1.53036 * 109.31162 * 54.63081 * 12 11 10 14 14 C 1.53041 * 109.54326 * 298.63858 * 13 12 11 15 15 H 1.09003 * 109.49733 * 301.38097 * 14 13 12 16 16 C 1.53001 * 109.49945 * 181.31817 * 14 13 12 17 17 H 1.08996 * 110.91269 * 302.44448 * 16 14 13 18 18 C 1.55157 * 111.00470 * 66.34866 * 16 14 13 19 19 C 1.54319 * 102.94349 * 153.57850 * 18 16 14 20 20 N 1.47300 * 107.30480 * 337.81590 * 19 18 16 21 21 C 1.36935 * 125.79390 * 178.92742 * 20 19 18 22 22 H 1.07996 * 119.99932 * 180.02562 * 21 20 19 23 23 C 1.38819 * 119.99923 * 359.97438 * 21 20 19 24 24 N 1.31612 * 120.00094 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47257 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47019 * 119.99769 * 25 23 21 28 28 H 1.48497 * 109.47389 * 239.99826 * 25 23 21 29 29 C 1.47428 * 108.55631 * 358.92404 * 20 19 18 30 30 C 1.46930 * 120.62894 * 175.93004 * 10 8 7 31 31 H 1.09002 * 109.47073 * 274.59193 * 1 2 3 32 32 H 1.08999 * 109.47016 * 34.58927 * 1 2 3 33 33 H 1.08997 * 109.47316 * 154.59065 * 1 2 3 34 34 H 1.07995 * 120.01850 * 180.02562 * 5 4 3 35 35 H 1.08008 * 121.08190 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.58970 * 6.63258 * 11 10 8 37 37 H 1.09001 * 109.70438 * 246.26550 * 11 10 8 38 38 H 1.09004 * 109.49421 * 294.68587 * 12 11 10 39 39 H 1.08996 * 109.49753 * 174.59056 * 12 11 10 40 40 H 1.09000 * 109.46159 * 178.61441 * 13 12 11 41 41 H 1.08997 * 109.45015 * 58.65336 * 13 12 11 42 42 H 1.08999 * 110.71901 * 271.94111 * 18 16 14 43 43 H 1.08997 * 110.71978 * 35.21122 * 18 16 14 44 44 H 1.08994 * 109.88888 * 97.22182 * 19 18 16 45 45 H 1.09000 * 109.88701 * 218.23931 * 19 18 16 46 46 H 0.97000 * 120.00451 * 179.97438 * 24 23 21 47 47 H 1.08991 * 110.36968 * 265.26099 * 29 20 19 48 48 H 1.08998 * 110.36155 * 143.04927 * 29 20 19 49 49 H 1.09000 * 109.58481 * 113.79749 * 30 10 8 50 50 H 1.09000 * 109.58304 * 353.37146 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1887 -0.0052 5 6 4.2023 0.1037 -0.0056 6 6 3.6090 -1.1478 -0.0008 7 6 2.2092 -1.2080 0.0054 8 6 1.4982 -2.5076 0.0107 9 8 0.6653 -2.7479 -0.8409 10 7 1.7751 -3.4233 0.9600 11 6 2.8416 -3.1846 1.9420 12 6 2.2637 -3.3602 3.3499 13 6 1.6057 -4.7375 3.4588 14 6 0.4592 -4.8384 2.4500 15 1 -0.2681 -4.0504 2.6459 16 6 -0.2189 -6.2035 2.5824 17 1 0.4983 -7.0104 2.4321 18 6 -0.9306 -6.3403 3.9543 19 6 -2.0514 -7.3600 3.6621 20 7 -2.3016 -7.3322 2.2107 21 6 -3.2094 -8.1071 1.5395 22 1 -3.3158 -8.0095 0.4693 23 6 -3.9922 -9.0187 2.2347 24 7 -3.8614 -9.1386 3.5388 25 14 -5.2301 -10.0762 1.3189 26 1 -5.1817 -9.7529 -0.1296 27 1 -4.8984 -11.5101 1.5168 28 1 -6.5937 -9.8069 1.8415 29 6 -1.4101 -6.3292 1.6001 30 6 1.0167 -4.6796 1.0320 31 1 -0.3633 0.0823 1.0244 32 1 -0.3633 0.8460 -0.5834 33 1 -0.3634 -0.9282 -0.4409 34 1 5.2787 0.1913 -0.0096 35 1 4.2060 -2.0479 -0.0015 36 1 3.2233 -2.1701 1.8276 37 1 3.6502 -3.8990 1.7873 38 1 1.5197 -2.5858 3.5369 39 1 3.0650 -3.2805 4.0845 40 1 1.2153 -4.8748 4.4672 41 1 2.3445 -5.5105 3.2472 42 1 -0.2444 -6.7269 4.7078 43 1 -1.3507 -5.3846 4.2678 44 1 -1.7329 -8.3577 3.9638 45 1 -2.9564 -7.0809 4.2017 46 1 -4.4087 -9.7753 4.0247 47 1 -1.9245 -5.3733 1.5033 48 1 -1.0636 -6.6731 0.6256 49 1 1.6749 -5.5175 0.8022 50 1 0.1943 -4.6515 0.3172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961199476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:58 Heat of formation + Delta-G solvation = 45.709824 kcal Electronic energy + Delta-G solvation = -30725.306695 eV Core-core repulsion = 26753.472182 eV Total energy + Delta-G solvation = -3971.834513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82200 -40.26239 -38.44546 -36.85857 -34.38086 -34.14094 -33.26552 -32.39349 -31.18661 -29.19617 -28.69126 -27.17099 -26.72407 -24.80619 -24.68200 -23.52600 -22.82677 -21.43020 -19.95397 -19.75775 -19.58169 -18.33084 -17.70559 -16.90840 -16.64359 -16.20637 -15.71755 -15.35897 -15.13717 -14.88223 -14.64415 -14.55601 -14.07876 -13.95992 -13.75841 -13.64565 -13.26906 -13.19130 -13.14868 -12.55156 -12.45599 -12.21595 -12.09476 -11.84595 -11.41067 -11.39296 -11.14911 -11.08406 -10.87927 -10.82467 -10.79612 -10.68358 -10.48158 -10.14581 -10.07867 -10.06440 -9.91244 -9.81905 -9.75209 -9.57870 -8.92097 -8.58832 -6.80149 -5.69410 -3.02150 0.00542 0.39479 2.15095 2.51319 3.05147 3.40915 3.46779 3.49076 3.55596 3.76715 3.89208 4.05394 4.30088 4.39720 4.52138 4.60910 4.67093 4.76877 4.81783 4.98820 4.99219 5.05977 5.09879 5.28002 5.29111 5.42447 5.45071 5.50090 5.53318 5.58211 5.63299 5.63906 5.67832 5.78728 5.84844 5.89744 5.92759 5.99147 6.14534 6.18205 6.31300 6.40340 6.54650 6.57844 6.73195 6.95442 6.97976 7.58865 7.64139 7.68153 7.84648 8.22963 8.28036 9.24452 9.85136 10.51721 11.42726 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002426 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.462696 B =11538.410815 C =12321.723140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.118 3.882 3 N -0.241 5.241 4 N -0.227 5.227 5 C 0.030 3.970 6 C -0.087 4.087 7 C -0.120 4.120 8 C 0.564 3.436 9 O -0.515 6.515 10 N -0.597 5.597 11 C 0.097 3.903 12 C -0.135 4.135 13 C -0.115 4.115 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.135 4.135 19 C 0.176 3.824 20 N -0.606 5.606 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.140 3.860 30 C 0.115 3.885 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.036 0.964 49 H 0.073 0.927 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.597 16.001 -1.359 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.026 4.026 3 N -0.084 5.084 4 N -0.069 5.069 5 C -0.134 4.134 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.349 3.651 9 O -0.391 6.391 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.173 4.173 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.093 0.907 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.174 4.174 19 C 0.052 3.948 20 N -0.333 5.333 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.014 3.986 30 C -0.006 4.006 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.196 0.804 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.035 0.965 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.916 17.347 -1.782 25.727 hybrid contribution -0.374 -2.213 -0.289 2.263 sum 18.541 15.134 -2.072 24.023 Atomic orbital electron populations 1.20991 0.86594 1.05981 1.04247 1.23049 0.99505 0.88507 0.91587 1.73082 1.01521 1.23882 1.09924 1.72891 0.99598 1.27768 1.06616 1.24296 1.02783 0.89153 0.97159 1.22655 0.93723 1.00610 0.94675 1.21095 0.94914 0.95751 1.01737 1.17944 0.82460 0.82715 0.81966 1.90835 1.33295 1.78181 1.36767 1.48094 1.35864 1.19053 1.29920 1.22021 0.89743 1.01998 0.88798 1.21931 1.00906 0.98944 0.95507 1.21590 0.97514 0.95909 1.00228 1.21485 0.96958 0.98769 0.93415 0.90698 1.22322 0.96983 0.94468 0.97731 0.90677 1.22881 0.98770 1.00302 0.95429 1.21170 0.93609 0.95352 0.84684 1.44547 1.42807 1.42732 1.03190 1.19118 1.11607 1.13117 0.91472 0.90424 1.24796 1.00124 0.99883 0.95832 1.69972 1.42710 1.38792 1.05641 0.86055 0.81003 0.80103 0.78709 1.20493 1.21812 1.21788 1.21578 0.89687 0.92679 0.94678 1.21897 0.96479 0.83494 0.98719 0.89412 0.89283 0.88168 0.80374 0.82550 0.90131 0.90531 0.91468 0.90554 0.90905 0.91637 0.92398 0.92664 0.93730 0.94155 0.93890 0.96506 0.94532 0.90853 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.92 36.01 0.36 -0.83 16 2 C 0.12 1.28 6.90 -82.00 -0.57 0.71 16 3 N -0.24 -2.84 11.42 33.81 0.39 -2.45 16 4 N -0.23 -2.40 11.48 30.53 0.35 -2.05 16 5 C 0.03 0.21 11.30 -17.41 -0.20 0.01 16 6 C -0.09 -0.59 7.67 -38.78 -0.30 -0.89 16 7 C -0.12 -1.18 4.90 -104.57 -0.51 -1.69 16 8 C 0.56 6.54 6.67 -12.20 -0.08 6.46 16 9 O -0.52 -7.81 14.62 5.35 0.08 -7.73 16 10 N -0.60 -5.97 2.97 -173.77 -0.52 -6.49 16 11 C 0.10 0.67 5.63 -3.71 -0.02 0.65 16 12 C -0.13 -0.99 6.08 -26.61 -0.16 -1.15 16 13 C -0.11 -1.08 5.03 -26.69 -0.13 -1.21 16 14 C -0.09 -1.05 1.84 -90.50 -0.17 -1.21 16 15 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 16 C -0.10 -1.50 2.56 -88.47 -0.23 -1.73 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -2.38 5.57 -24.90 -0.14 -2.52 16 19 C 0.18 4.24 5.39 -2.91 -0.02 4.22 16 20 N -0.61 -15.50 3.40 -169.86 -0.58 -16.08 16 21 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -27.31 10.33 55.49 0.57 -26.73 16 25 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 C 0.14 2.83 5.75 -2.53 -0.01 2.81 16 30 C 0.12 1.35 5.40 -3.71 -0.02 1.33 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.14 5.69 -51.93 -0.30 0.85 16 34 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.16 0.60 7.50 -52.48 -0.39 0.21 16 36 H 0.08 0.47 4.76 -51.93 -0.25 0.22 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 43 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 44 H 0.04 1.18 7.39 -51.93 -0.38 0.80 16 45 H 0.04 1.08 7.52 -51.93 -0.39 0.69 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.35 8.03 -51.93 -0.42 -0.06 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.10 1.42 6.45 -51.93 -0.33 1.08 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -34.07 387.97 -9.21 -43.28 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.88 Total: -3.00 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.45 Total: -1.92 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.22 Total: -53.79 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.07 -9.21 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961199476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.993 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds