Wall clock time and date at job start Wed Apr 1 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31922 * 120.17344 * 2 1 4 4 N 1.28273 * 122.32705 * 180.27327 * 3 2 1 5 5 C 1.31920 * 122.51647 * 359.72765 * 4 3 2 6 6 C 1.38507 * 119.96483 * 0.02562 * 5 4 3 7 7 C 1.39726 * 120.17036 * 179.74169 * 2 1 3 8 8 C 1.48140 * 121.14685 * 0.02562 * 7 2 1 9 9 O 1.21518 * 119.99666 * 54.08258 * 8 7 2 10 10 N 1.34772 * 119.99991 * 234.07784 * 8 7 2 11 11 C 1.46924 * 120.63086 * 355.90366 * 10 8 7 12 12 C 1.53201 * 108.77347 * 126.41684 * 11 10 8 13 13 C 1.53036 * 109.31162 * 54.63081 * 12 11 10 14 14 C 1.53041 * 109.54326 * 298.63858 * 13 12 11 15 15 H 1.09003 * 109.49733 * 301.38097 * 14 13 12 16 16 C 1.53001 * 109.49945 * 181.31817 * 14 13 12 17 17 H 1.08996 * 110.91269 * 302.44448 * 16 14 13 18 18 C 1.55157 * 111.00470 * 66.34866 * 16 14 13 19 19 C 1.54319 * 102.94349 * 153.57850 * 18 16 14 20 20 N 1.47300 * 107.30480 * 337.81590 * 19 18 16 21 21 C 1.36935 * 125.79390 * 178.92742 * 20 19 18 22 22 H 1.07996 * 119.99932 * 180.02562 * 21 20 19 23 23 C 1.38819 * 119.99923 * 359.97438 * 21 20 19 24 24 N 1.31612 * 120.00094 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47257 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47019 * 119.99769 * 25 23 21 28 28 H 1.48497 * 109.47389 * 239.99826 * 25 23 21 29 29 C 1.47428 * 108.55631 * 358.92404 * 20 19 18 30 30 C 1.46930 * 120.62894 * 175.93004 * 10 8 7 31 31 H 1.09002 * 109.47073 * 274.59193 * 1 2 3 32 32 H 1.08999 * 109.47016 * 34.58927 * 1 2 3 33 33 H 1.08997 * 109.47316 * 154.59065 * 1 2 3 34 34 H 1.07995 * 120.01850 * 180.02562 * 5 4 3 35 35 H 1.08008 * 121.08190 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.58970 * 6.63258 * 11 10 8 37 37 H 1.09001 * 109.70438 * 246.26550 * 11 10 8 38 38 H 1.09004 * 109.49421 * 294.68587 * 12 11 10 39 39 H 1.08996 * 109.49753 * 174.59056 * 12 11 10 40 40 H 1.09000 * 109.46159 * 178.61441 * 13 12 11 41 41 H 1.08997 * 109.45015 * 58.65336 * 13 12 11 42 42 H 1.08999 * 110.71901 * 271.94111 * 18 16 14 43 43 H 1.08997 * 110.71978 * 35.21122 * 18 16 14 44 44 H 1.08994 * 109.88888 * 97.22182 * 19 18 16 45 45 H 1.09000 * 109.88701 * 218.23931 * 19 18 16 46 46 H 0.97000 * 120.00451 * 179.97438 * 24 23 21 47 47 H 1.08991 * 110.36968 * 265.26099 * 29 20 19 48 48 H 1.08998 * 110.36155 * 143.04927 * 29 20 19 49 49 H 1.09000 * 109.58481 * 113.79749 * 30 10 8 50 50 H 1.09000 * 109.58304 * 353.37146 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1887 -0.0052 5 6 4.2023 0.1037 -0.0056 6 6 3.6090 -1.1478 -0.0008 7 6 2.2092 -1.2080 0.0054 8 6 1.4982 -2.5076 0.0107 9 8 0.6653 -2.7479 -0.8409 10 7 1.7751 -3.4233 0.9600 11 6 2.8416 -3.1846 1.9420 12 6 2.2637 -3.3602 3.3499 13 6 1.6057 -4.7375 3.4588 14 6 0.4592 -4.8384 2.4500 15 1 -0.2681 -4.0504 2.6459 16 6 -0.2189 -6.2035 2.5824 17 1 0.4983 -7.0104 2.4321 18 6 -0.9306 -6.3403 3.9543 19 6 -2.0514 -7.3600 3.6621 20 7 -2.3016 -7.3322 2.2107 21 6 -3.2094 -8.1071 1.5395 22 1 -3.3158 -8.0095 0.4693 23 6 -3.9922 -9.0187 2.2347 24 7 -3.8614 -9.1386 3.5388 25 14 -5.2301 -10.0762 1.3189 26 1 -5.1817 -9.7529 -0.1296 27 1 -4.8984 -11.5101 1.5168 28 1 -6.5937 -9.8069 1.8415 29 6 -1.4101 -6.3292 1.6001 30 6 1.0167 -4.6796 1.0320 31 1 -0.3633 0.0823 1.0244 32 1 -0.3633 0.8460 -0.5834 33 1 -0.3634 -0.9282 -0.4409 34 1 5.2787 0.1913 -0.0096 35 1 4.2060 -2.0479 -0.0015 36 1 3.2233 -2.1701 1.8276 37 1 3.6502 -3.8990 1.7873 38 1 1.5197 -2.5858 3.5369 39 1 3.0650 -3.2805 4.0845 40 1 1.2153 -4.8748 4.4672 41 1 2.3445 -5.5105 3.2472 42 1 -0.2444 -6.7269 4.7078 43 1 -1.3507 -5.3846 4.2678 44 1 -1.7329 -8.3577 3.9638 45 1 -2.9564 -7.0809 4.2017 46 1 -4.4087 -9.7753 4.0247 47 1 -1.9245 -5.3733 1.5033 48 1 -1.0636 -6.6731 0.6256 49 1 1.6749 -5.5175 0.8022 50 1 0.1943 -4.6515 0.3172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961199476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:57 Heat of formation + Delta-G solvation = 23.902635 kcal Electronic energy + Delta-G solvation = -30726.252326 eV Core-core repulsion = 26753.472182 eV Total energy + Delta-G solvation = -3972.780143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.53651 -41.10741 -39.67960 -38.10830 -35.46836 -34.93081 -34.39276 -33.48365 -32.46747 -30.89196 -29.50727 -28.63407 -27.55164 -26.45485 -25.55179 -24.33690 -23.80337 -22.38654 -21.72734 -20.92405 -20.55201 -19.07890 -18.82504 -18.42397 -17.49780 -16.96476 -16.85219 -16.50108 -16.24037 -15.94474 -15.76789 -15.56531 -15.45927 -15.05130 -14.69596 -14.45437 -14.11256 -14.02672 -13.99940 -13.95846 -13.80322 -13.56616 -13.34176 -13.33287 -12.89938 -12.78492 -12.25860 -12.19091 -12.09342 -12.05730 -11.92432 -11.81986 -11.69608 -11.65512 -11.41458 -11.36735 -11.16100 -11.01935 -10.84387 -10.73081 -10.60673 -9.75273 -8.90039 -7.86786 -5.21677 -0.66255 -0.22588 1.30975 1.43533 1.44486 1.55068 1.73165 2.38178 2.47914 2.89143 3.08011 3.25049 3.31165 3.52078 3.60322 3.62328 3.77423 3.85827 3.89474 4.04649 4.13845 4.18711 4.24915 4.29092 4.38487 4.40866 4.44788 4.52453 4.54289 4.59620 4.68835 4.76900 4.82192 4.85306 4.89427 4.91349 4.96139 5.00235 5.10022 5.13652 5.15250 5.17060 5.35383 5.39448 5.43339 5.46467 5.55878 5.69021 5.78625 6.17516 6.19542 6.85148 7.09821 7.55852 7.77405 8.42268 9.24007 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002426 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.462696 B =11538.410815 C =12321.723140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.104 3.896 3 N -0.270 5.270 4 N -0.258 5.258 5 C 0.043 3.957 6 C -0.065 4.065 7 C -0.135 4.135 8 C 0.563 3.437 9 O -0.563 6.563 10 N -0.591 5.591 11 C 0.092 3.908 12 C -0.130 4.130 13 C -0.111 4.111 14 C -0.074 4.074 15 H 0.059 0.941 16 C -0.075 4.075 17 H 0.083 0.917 18 C -0.118 4.118 19 C 0.181 3.819 20 N -0.630 5.630 21 C -0.242 4.242 22 H 0.078 0.922 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.977 3.023 26 H -0.268 1.268 27 H -0.289 1.289 28 H -0.292 1.292 29 C 0.135 3.865 30 C 0.119 3.881 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.224 0.776 35 H 0.196 0.804 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.011 0.989 45 H -0.001 1.001 46 H 0.247 0.753 47 H 0.010 0.990 48 H 0.036 0.964 49 H 0.089 0.911 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.439 16.507 -1.103 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 N -0.112 5.112 4 N -0.098 5.098 5 C -0.121 4.121 6 C -0.095 4.095 7 C -0.149 4.149 8 C 0.350 3.650 9 O -0.442 6.442 10 N -0.322 5.322 11 C -0.029 4.029 12 C -0.168 4.168 13 C -0.149 4.149 14 C -0.094 4.094 15 H 0.078 0.922 16 C -0.095 4.095 17 H 0.101 0.899 18 C -0.157 4.157 19 C 0.057 3.943 20 N -0.356 5.356 21 C -0.371 4.371 22 H 0.096 0.904 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.806 3.194 26 H -0.192 1.192 27 H -0.216 1.216 28 H -0.219 1.219 29 C 0.010 3.990 30 C -0.003 4.003 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.240 0.760 35 H 0.213 0.787 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.030 0.970 45 H 0.018 0.982 46 H 0.056 0.944 47 H 0.028 0.972 48 H 0.055 0.945 49 H 0.107 0.893 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.797 17.899 -1.517 29.024 hybrid contribution -1.523 -2.364 -0.385 2.839 sum 21.274 15.534 -1.902 26.411 Atomic orbital electron populations 1.20916 0.87005 1.05025 1.04577 1.23076 0.99605 0.89037 0.92387 1.73033 1.02482 1.24367 1.11343 1.72793 0.99356 1.29816 1.07808 1.24989 1.04440 0.88065 0.94636 1.23100 0.92336 1.02148 0.91872 1.20983 0.96344 0.94173 1.03428 1.18214 0.81881 0.83319 0.81568 1.90813 1.35423 1.79112 1.38826 1.48130 1.36055 1.17946 1.30044 1.22351 0.89248 1.03854 0.87433 1.21913 1.01349 0.96968 0.96555 1.21575 0.96564 0.97915 0.98827 1.21324 0.97669 0.95509 0.94920 0.92218 1.22184 0.95361 0.97219 0.94701 0.89860 1.22724 0.97046 0.98711 0.97174 1.20980 0.94123 0.95510 0.83731 1.44902 1.43251 1.43301 1.04187 1.19482 1.12270 1.13462 0.91856 0.90417 1.25647 1.02219 1.01451 0.96737 1.70192 1.43522 1.39360 1.06981 0.85021 0.78225 0.78113 0.78070 1.19199 1.21583 1.21908 1.21758 0.90602 0.90844 0.95802 1.21699 0.96227 0.84978 0.97441 0.88727 0.88920 0.90096 0.75961 0.78701 0.88629 0.87519 0.92750 0.87643 0.90996 0.90032 0.89546 0.91736 0.97035 0.98229 0.94409 0.97192 0.94537 0.89308 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.92 71.24 0.71 -1.73 16 2 C 0.10 2.23 6.90 42.90 0.30 2.53 16 3 N -0.27 -6.21 11.42 -46.95 -0.54 -6.75 16 4 N -0.26 -4.93 11.48 -57.33 -0.66 -5.59 16 5 C 0.04 0.42 11.30 84.74 0.96 1.38 16 6 C -0.07 -0.62 7.67 22.79 0.17 -0.45 16 7 C -0.13 -2.42 4.90 -19.83 -0.10 -2.52 16 8 C 0.56 12.57 6.67 86.87 0.58 13.14 16 9 O -0.56 -17.63 14.62 -3.77 -0.06 -17.68 16 10 N -0.59 -10.45 2.97 -821.97 -2.44 -12.90 16 11 C 0.09 0.84 5.63 86.37 0.49 1.32 16 12 C -0.13 -1.35 6.08 30.67 0.19 -1.16 16 13 C -0.11 -1.66 5.03 30.62 0.15 -1.50 16 14 C -0.07 -1.67 1.84 -10.72 -0.02 -1.69 16 15 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 16 C -0.07 -2.29 2.56 -9.40 -0.02 -2.31 16 17 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 18 C -0.12 -4.07 5.57 31.78 0.18 -3.89 16 19 C 0.18 9.04 5.39 86.67 0.47 9.51 16 20 N -0.63 -33.31 3.40 -691.31 -2.35 -35.67 16 21 C -0.24 -14.03 10.28 84.04 0.86 -13.17 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 24 N -0.95 -58.45 10.33 21.65 0.22 -58.23 16 25 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 29 C 0.13 5.57 5.75 86.85 0.50 6.07 16 30 C 0.12 2.61 5.40 86.36 0.47 3.07 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.01 5.69 -2.39 -0.01 1.99 16 34 H 0.22 0.05 8.06 -2.91 -0.02 0.02 16 35 H 0.20 0.31 7.50 -2.91 -0.02 0.29 16 36 H 0.10 0.62 4.76 -2.39 -0.01 0.61 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 38 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 1.13 7.45 -2.39 -0.02 1.12 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 2.51 8.11 -2.39 -0.02 2.49 16 43 H 0.06 2.11 8.01 -2.39 -0.02 2.09 16 44 H 0.01 0.63 7.39 -2.39 -0.02 0.62 16 45 H 0.00 -0.03 7.52 -2.39 -0.02 -0.05 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.07 1.98 6.45 -2.39 -0.02 1.96 16 Total: -1.00 -80.87 387.97 3.48 -77.39 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 0.94 Total: 5.29 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.34 Total: 5.12 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -5.77 Total: -119.13 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.06 Total: -17.68 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -80.87 3.48 -77.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961199476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.297 kcal (2) G-P(sol) polarization free energy of solvation -80.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds