Wall clock time and date at job start Wed Apr 1 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00526 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99748 * 3 2 1 5 5 H 1.48498 * 109.46710 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46796 * 119.99711 * 3 2 1 7 7 C 1.38823 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99664 * 161.34056 * 7 2 1 9 9 N 1.36931 * 119.99917 * 341.61431 * 7 2 1 10 10 C 1.46928 * 120.63116 * 326.66238 * 9 7 2 11 11 C 1.52762 * 109.00816 * 233.58242 * 10 9 7 12 12 C 1.53039 * 109.38420 * 305.58731 * 11 10 9 13 13 C 1.53043 * 109.53558 * 61.24396 * 12 11 10 14 14 H 1.09003 * 109.52871 * 58.59501 * 13 12 11 15 15 C 1.53002 * 109.49833 * 178.68270 * 13 12 11 16 16 C 1.53045 * 109.45381 * 299.90281 * 15 13 12 17 17 C 1.53194 * 109.30692 * 178.61425 * 16 15 13 18 18 N 1.46926 * 108.77451 * 54.63648 * 17 16 15 19 19 C 1.34779 * 120.63022 * 126.37006 * 18 17 16 20 20 O 1.21521 * 120.00111 * 185.55037 * 19 18 17 21 21 C 1.48138 * 120.00137 * 5.54962 * 19 18 17 22 22 C 1.40112 * 121.14314 * 32.61091 * 21 19 18 23 23 C 1.38507 * 117.82078 * 179.97438 * 22 21 19 24 24 N 1.31918 * 119.96879 * 359.97438 * 23 22 21 25 25 N 1.28276 * 122.51682 * 0.02562 * 24 23 22 26 26 C 1.31923 * 122.32350 * 359.71588 * 25 24 23 27 27 C 1.46923 * 118.74081 * 306.38460 * 18 17 16 28 28 C 1.53042 * 109.46064 * 179.83740 * 15 13 12 29 29 C 1.46925 * 120.62900 * 146.94352 * 9 7 2 30 30 H 0.97003 * 119.99841 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58899 * 353.41905 * 10 9 7 32 32 H 1.09009 * 109.58428 * 113.84593 * 10 9 7 33 33 H 1.09008 * 109.56377 * 185.55258 * 11 10 9 34 34 H 1.08998 * 109.38435 * 65.51847 * 11 10 9 35 35 H 1.08999 * 109.46355 * 301.21918 * 12 11 10 36 36 H 1.08998 * 109.45773 * 181.25732 * 12 11 10 37 37 H 1.08996 * 109.46219 * 59.85991 * 15 13 12 38 38 H 1.08998 * 109.49926 * 298.55949 * 16 15 13 39 39 H 1.08999 * 109.49752 * 58.66794 * 16 15 13 40 40 H 1.08999 * 109.58787 * 294.84625 * 17 16 15 41 41 H 1.08998 * 109.70172 * 174.49014 * 17 16 15 42 42 H 1.07999 * 121.09264 * 0.02562 * 22 21 19 43 43 H 1.07996 * 120.01355 * 180.02562 * 23 22 21 44 44 H 1.08009 * 120.17188 * 180.27929 * 26 25 24 45 45 H 1.08995 * 109.59062 * 293.82630 * 27 18 17 46 46 H 1.08999 * 109.59188 * 173.39707 * 27 18 17 47 47 H 1.09005 * 109.49464 * 301.33501 * 28 15 13 48 48 H 1.09004 * 109.49488 * 61.42847 * 28 15 13 49 49 H 1.08999 * 109.58624 * 246.15330 * 29 9 7 50 50 H 1.08996 * 109.58662 * 6.58370 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0476 -1.2270 -0.2987 9 7 1.3778 -2.3577 0.3751 10 6 0.3306 -2.3377 1.4055 11 6 0.6819 -3.3527 2.4917 12 6 0.9081 -4.7242 1.8514 13 6 2.0774 -4.6430 0.8673 14 1 2.9737 -4.3136 1.3929 15 6 2.3238 -6.0221 0.2521 16 6 2.6612 -7.0218 1.3607 17 6 2.8732 -8.4084 0.7448 18 7 3.8934 -8.3074 -0.3077 19 6 4.9751 -9.1113 -0.2949 20 8 5.8607 -8.9513 -1.1115 21 6 5.0847 -10.1898 0.7147 22 6 3.9470 -10.8540 1.1917 23 6 4.1290 -11.8520 2.1348 24 7 5.3441 -12.1490 2.5538 25 7 6.3896 -11.5448 2.1211 26 6 6.3265 -10.5838 1.2195 27 6 3.7120 -7.3133 -1.3742 28 6 3.4906 -5.9390 -0.7347 29 6 1.7380 -3.6418 -0.2414 30 1 -0.4850 0.8401 -0.0004 31 1 0.2685 -1.3418 1.8442 32 1 -0.6275 -2.6025 0.9579 33 1 -0.1358 -3.4168 3.2097 34 1 1.5909 -3.0355 3.0029 35 1 0.0068 -5.0300 1.3200 36 1 1.1369 -5.4541 2.6278 37 1 1.4270 -6.3511 -0.2727 38 1 3.5720 -6.7068 1.8699 39 1 1.8396 -7.0631 2.0757 40 1 1.9373 -8.7638 0.3137 41 1 3.2090 -9.1045 1.5135 42 1 2.9605 -10.5969 0.8352 43 1 3.2766 -12.3872 2.5263 44 1 7.2298 -10.1014 0.8762 45 1 2.8446 -7.5794 -1.9781 46 1 4.6023 -7.2848 -2.0025 47 1 3.2593 -5.2095 -1.5109 48 1 4.3936 -5.6341 -0.2056 49 1 0.8971 -4.0151 -0.8259 50 1 2.6042 -3.5061 -0.8889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961410291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:17 Heat of formation + Delta-G solvation = 25.764895 kcal Electronic energy + Delta-G solvation = -30540.033028 eV Core-core repulsion = 26567.333639 eV Total energy + Delta-G solvation = -3972.699390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.46411 -41.08335 -39.83278 -38.11974 -35.75826 -34.78997 -33.69098 -33.60594 -32.49628 -31.76925 -30.68524 -27.29891 -27.21804 -25.86765 -25.55423 -24.56610 -23.23225 -23.08007 -21.78116 -20.58848 -20.50241 -19.06438 -18.62406 -18.23696 -17.84744 -17.18056 -16.87188 -16.54466 -15.99954 -15.94331 -15.69336 -15.59692 -15.20875 -15.01105 -14.92288 -14.64720 -14.60144 -14.43005 -14.15854 -14.00265 -13.68482 -13.47087 -13.03321 -12.91263 -12.74977 -12.47359 -12.25502 -12.22446 -12.07984 -12.04467 -11.77581 -11.77240 -11.63579 -11.47805 -11.35523 -11.24234 -11.15921 -10.95871 -10.75620 -10.60671 -10.51755 -9.76786 -8.59935 -7.89305 -5.38235 -0.74387 -0.19410 1.43231 1.45412 1.45909 1.52166 1.74151 2.46993 2.48695 3.02335 3.07990 3.23866 3.36190 3.50493 3.62879 3.71707 3.75699 3.84716 3.95409 4.09427 4.22760 4.26638 4.32706 4.38783 4.43869 4.45280 4.50609 4.54898 4.62181 4.72294 4.75005 4.79435 4.89527 4.91465 4.97182 4.98551 5.08642 5.10584 5.14240 5.16954 5.23077 5.35083 5.39173 5.43595 5.48550 5.57488 5.62417 5.67408 5.80459 6.17820 6.40143 6.84684 7.15409 7.55067 7.87330 8.40859 9.15409 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.002278 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.730309 B =12287.827871 C =12860.604567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.057 0.943 9 N -0.611 5.611 10 C 0.179 3.821 11 C -0.134 4.134 12 C -0.096 4.096 13 C -0.085 4.085 14 H 0.047 0.953 15 C -0.070 4.070 16 C -0.127 4.127 17 C 0.087 3.913 18 N -0.592 5.592 19 C 0.561 3.439 20 O -0.569 6.569 21 C -0.137 4.137 22 C -0.069 4.069 23 C 0.048 3.952 24 N -0.261 5.261 25 N -0.273 5.273 26 C 0.082 3.918 27 C 0.117 3.883 28 C -0.127 4.127 29 C 0.151 3.849 30 H 0.250 0.750 31 H 0.033 0.967 32 H -0.003 1.003 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.224 0.776 44 H 0.178 0.822 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.012 0.988 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -24.648 4.053 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.240 4.240 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.399 4.399 8 H 0.074 0.926 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.133 4.133 13 C -0.105 4.105 14 H 0.066 0.934 15 C -0.089 4.089 16 C -0.165 4.165 17 C -0.034 4.034 18 N -0.323 5.323 19 C 0.348 3.652 20 O -0.449 6.449 21 C -0.151 4.151 22 C -0.099 4.099 23 C -0.116 4.116 24 N -0.102 5.102 25 N -0.113 5.113 26 C -0.084 4.084 27 C -0.005 4.005 28 C -0.166 4.166 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.015 0.985 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.219 0.781 43 H 0.241 0.759 44 H 0.195 0.805 45 H 0.113 0.887 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.029 0.971 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.989 -25.351 4.593 25.936 hybrid contribution -0.315 2.723 -1.213 2.997 sum 2.675 -22.628 3.380 23.035 Atomic orbital electron populations 1.70182 1.06686 1.25992 1.54553 1.25855 0.95921 1.01534 1.00675 0.85463 0.77794 0.79587 0.78353 1.20049 1.21808 1.20578 1.19327 0.92914 0.86571 1.41051 0.92564 1.44240 1.43710 1.03194 1.42258 1.20424 0.89223 0.96666 0.88403 1.21962 1.00521 0.96914 0.97924 1.21455 0.97748 0.95844 0.98261 1.21492 0.97815 0.94632 0.96586 0.93441 1.21069 0.98083 0.93774 0.95945 1.22024 1.02743 0.93769 0.97975 1.22689 0.92082 0.98584 0.90057 1.48121 1.21815 1.35089 1.27318 1.18225 0.81677 0.81686 0.83567 1.90803 1.40090 1.72294 1.41699 1.21104 0.96292 0.98785 0.98915 1.23384 1.00639 0.92450 0.93383 1.25080 0.97839 0.94845 0.93853 1.72807 0.97594 1.19981 1.19854 1.73116 1.23104 1.05823 1.09213 1.24572 0.98587 0.93293 0.91900 1.21689 1.03071 0.86758 0.88986 1.21951 0.98637 0.96468 0.99506 1.21110 0.96709 0.85738 0.93838 0.94077 0.94875 0.98501 0.91287 0.93796 0.92221 0.89699 0.89580 0.92908 0.87914 0.86964 0.87379 0.78088 0.75950 0.80461 0.88682 0.90513 0.90852 0.93289 0.97053 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 11.70 21.65 0.25 -55.03 16 2 C -0.04 -2.44 4.83 84.87 0.41 -2.03 16 3 Si 0.96 45.15 29.59 68.60 2.03 47.18 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.27 -14.88 9.51 84.04 0.80 -14.08 16 8 H 0.06 3.09 7.90 -2.91 -0.02 3.07 16 9 N -0.61 -30.31 2.96 -699.90 -2.07 -32.38 16 10 C 0.18 8.42 5.26 86.22 0.45 8.88 16 11 C -0.13 -4.67 6.06 30.53 0.19 -4.48 16 12 C -0.10 -2.55 4.86 30.62 0.15 -2.40 16 13 C -0.09 -2.44 1.92 -10.71 -0.02 -2.46 16 14 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 15 C -0.07 -1.34 1.74 -10.76 -0.02 -1.36 16 16 C -0.13 -1.69 5.05 30.67 0.15 -1.53 16 17 C 0.09 0.72 4.82 86.36 0.42 1.14 16 18 N -0.59 -9.10 2.97 -821.99 -2.44 -11.54 16 19 C 0.56 11.03 7.47 86.87 0.65 11.68 16 20 O -0.57 -16.01 16.27 -3.78 -0.06 -16.08 16 21 C -0.14 -2.09 5.40 -19.83 -0.11 -2.20 16 22 C -0.07 -0.51 7.58 22.79 0.17 -0.34 16 23 C 0.05 0.40 11.30 84.74 0.96 1.36 16 24 N -0.26 -4.64 11.48 -57.33 -0.66 -5.30 16 25 N -0.27 -5.78 11.49 -56.53 -0.65 -6.43 16 26 C 0.08 1.53 10.93 85.04 0.93 2.46 16 27 C 0.12 2.07 6.44 86.36 0.56 2.63 16 28 C -0.13 -2.70 5.05 30.67 0.15 -2.55 16 29 C 0.15 5.90 5.27 86.36 0.46 6.36 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.03 1.78 6.52 -2.39 -0.02 1.77 16 32 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.67 6.33 -2.39 -0.02 1.66 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 1.03 6.33 -2.39 -0.02 1.01 16 40 H 0.11 0.31 8.07 -2.39 -0.02 0.29 16 41 H 0.11 0.54 4.26 -2.39 -0.01 0.53 16 42 H 0.20 -0.07 5.91 -2.91 -0.02 -0.09 16 43 H 0.22 -0.23 8.06 -2.91 -0.02 -0.25 16 44 H 0.18 3.19 8.02 -2.91 -0.02 3.17 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 47 H 0.07 1.74 6.49 -2.38 -0.02 1.73 16 48 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.04 1.79 6.52 -2.39 -0.02 1.77 16 Total: -1.00 -77.32 382.44 3.64 -73.68 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.95 Total: 4.83 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.30 Total: 1.07 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -5.57 Total: -110.68 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.06 Total: -16.08 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -77.32 3.64 -73.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961410291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.443 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds