Wall clock time and date at job start Wed Apr 1 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38547 * 120.01537 * 2 1 4 4 C 1.40079 * 117.81784 * 180.26211 * 3 2 1 5 5 C 1.48135 * 121.14704 * 179.73760 * 4 3 2 6 6 O 1.21511 * 119.99822 * 328.17266 * 5 4 3 7 7 N 1.34774 * 119.99967 * 148.16437 * 5 4 3 8 8 C 1.46933 * 120.62879 * 1.30772 * 7 5 4 9 9 C 1.53192 * 108.77215 * 233.62630 * 8 7 5 10 10 C 1.53041 * 109.34077 * 305.37820 * 9 8 7 11 11 C 1.53043 * 109.53453 * 61.32049 * 10 9 8 12 12 H 1.08996 * 109.49960 * 58.65441 * 11 10 9 13 13 C 1.53003 * 109.49444 * 178.71343 * 11 10 9 14 14 H 1.09001 * 109.87477 * 179.48626 * 13 11 10 15 15 C 1.54324 * 110.01036 * 58.38972 * 13 11 10 16 16 C 1.55269 * 103.00956 * 218.39403 * 15 13 11 17 17 C 1.54913 * 101.52907 * 35.36138 * 16 15 13 18 18 N 1.47019 * 109.88598 * 300.50470 * 13 11 10 19 19 C 1.36940 * 125.64858 * 298.53880 * 18 13 11 20 20 H 1.08003 * 119.99749 * 351.50638 * 19 18 13 21 21 C 1.38808 * 120.00039 * 171.51373 * 19 18 13 22 22 N 1.31613 * 120.00337 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99891 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47150 * 59.99911 * 23 21 19 25 25 H 1.48497 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46805 * 300.00052 * 23 21 19 27 27 C 1.46923 * 120.63240 * 181.32224 * 7 5 4 28 28 C 1.39770 * 117.70526 * 359.47015 * 4 3 2 29 29 N 1.31895 * 119.65772 * 0.27548 * 28 4 3 30 30 N 1.28274 * 122.32613 * 359.97438 * 29 28 4 31 31 H 1.09004 * 109.47085 * 270.27548 * 1 2 3 32 32 H 1.08996 * 109.47273 * 30.28267 * 1 2 3 33 33 H 1.09000 * 109.47171 * 150.28366 * 1 2 3 34 34 H 1.08001 * 121.09234 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.58605 * 353.41413 * 8 7 5 36 36 H 1.09005 * 109.58485 * 113.84251 * 8 7 5 37 37 H 1.08992 * 109.49801 * 65.31836 * 9 8 7 38 38 H 1.09004 * 109.49595 * 185.38638 * 9 8 7 39 39 H 1.08992 * 109.43558 * 301.31693 * 10 9 8 40 40 H 1.09004 * 109.48719 * 181.35328 * 10 9 8 41 41 H 1.08995 * 110.72426 * 336.68134 * 15 13 11 42 42 H 1.09004 * 110.71967 * 99.95186 * 15 13 11 43 43 H 1.09004 * 110.95892 * 277.33395 * 16 15 13 44 44 H 1.09000 * 111.10423 * 153.45375 * 16 15 13 45 45 H 1.08999 * 110.37041 * 204.23394 * 17 16 15 46 46 H 1.09000 * 110.36083 * 82.01748 * 17 16 15 47 47 H 0.96997 * 120.00291 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58886 * 6.59173 * 27 7 5 49 49 H 1.08998 * 109.70877 * 246.23058 * 27 7 5 50 50 H 1.07999 * 120.17270 * 180.29072 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1460 -0.0057 5 6 4.4140 2.3835 -0.0119 6 8 3.9987 3.3812 -0.5674 7 7 5.6153 2.4027 0.5988 8 6 6.1434 1.1962 1.2502 9 6 6.5150 1.5392 2.6962 10 6 7.4768 2.7296 2.7037 11 6 6.7900 3.9463 2.0792 12 1 5.8861 4.1820 2.6408 13 6 7.7410 5.1443 2.1162 14 1 7.2611 6.0125 1.6644 15 6 9.0421 4.8094 1.3568 16 6 10.1371 5.4891 2.2227 17 6 9.5711 5.2887 3.6508 18 7 8.1123 5.4453 3.5065 19 6 7.2465 5.8101 4.5027 20 1 6.2155 6.0305 4.2682 21 6 7.6938 5.8967 5.8139 22 7 8.9503 5.6288 6.0996 23 14 6.5128 6.3950 7.1727 24 1 5.3946 5.4202 7.2388 25 1 7.2321 6.4129 8.4717 26 1 5.9731 7.7489 6.8875 27 6 6.4216 3.6307 0.6261 28 6 4.2017 -0.1155 0.0005 29 7 3.4483 -1.1981 0.0058 30 7 2.1668 -1.1420 0.0060 31 1 -0.3633 0.0049 1.0277 32 1 -0.3633 0.8874 -0.5182 33 1 -0.3633 -0.8925 -0.5094 34 1 1.6782 2.1452 0.0004 35 1 5.3833 0.4151 1.2437 36 1 7.0295 0.8513 0.7172 37 1 5.6136 1.7969 3.2521 38 1 6.9963 0.6792 3.1620 39 1 8.3675 2.4798 2.1273 40 1 7.7617 2.9605 3.7302 41 1 9.1986 3.7315 1.3165 42 1 9.0235 5.2352 0.3535 43 1 10.2230 6.5486 1.9816 44 1 11.0968 4.9851 2.1085 45 1 9.9690 6.0460 4.3263 46 1 9.8111 4.2906 4.0173 47 1 9.2630 5.6896 7.0158 48 1 5.8450 4.4558 0.2079 49 1 7.3303 3.4868 0.0417 50 1 5.2781 -0.2033 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963293733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:58 Heat of formation + Delta-G solvation = 67.045466 kcal Electronic energy + Delta-G solvation = -31152.004272 eV Core-core repulsion = 27181.094942 eV Total energy + Delta-G solvation = -3970.909330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74684 -40.11822 -38.43022 -36.65756 -34.47207 -33.91629 -32.74657 -32.27763 -31.28667 -29.37665 -28.77377 -27.05542 -26.16767 -24.98453 -24.51188 -23.63545 -22.66143 -21.43223 -20.34040 -19.59294 -18.58312 -18.42967 -17.08048 -17.01810 -16.69973 -16.10190 -15.60454 -15.22586 -14.97336 -14.67825 -14.54982 -14.31862 -13.97958 -13.87062 -13.76235 -13.42102 -13.19512 -13.12935 -12.88018 -12.80037 -12.18646 -12.10710 -11.92610 -11.62715 -11.32418 -11.21306 -10.94011 -10.87225 -10.80972 -10.71417 -10.56213 -10.43174 -10.34034 -10.15931 -10.00581 -9.95704 -9.85710 -9.66040 -9.59947 -9.48856 -8.68699 -8.60951 -6.83856 -5.73705 -3.09593 0.06176 0.45458 2.41722 2.69205 3.20262 3.36992 3.42484 3.42671 3.58220 3.90567 4.01285 4.15460 4.45161 4.46061 4.68772 4.71056 4.89904 4.99537 5.10815 5.13288 5.15684 5.27773 5.31830 5.37809 5.42824 5.49991 5.57315 5.62540 5.66180 5.70828 5.73051 5.78465 5.85176 5.87207 5.97839 6.05805 6.20719 6.29144 6.36425 6.47623 6.55279 6.61040 6.72023 6.90831 6.94375 7.07953 7.18130 7.55580 7.58664 7.81465 7.84845 8.28456 8.29228 9.19112 9.80252 10.47070 11.35394 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003001 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.065723 B = 9328.907664 C =10267.439459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.069 3.931 3 C -0.063 4.063 4 C -0.119 4.119 5 C 0.559 3.441 6 O -0.528 6.528 7 N -0.591 5.591 8 C 0.074 3.926 9 C -0.134 4.134 10 C -0.106 4.106 11 C -0.106 4.106 12 H 0.071 0.929 13 C 0.168 3.832 14 H 0.034 0.966 15 C -0.131 4.131 16 C -0.149 4.149 17 C 0.168 3.832 18 N -0.590 5.590 19 C -0.222 4.222 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.115 3.885 28 C 0.045 3.955 29 N -0.238 5.238 30 N -0.233 5.233 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.018 0.982 47 H 0.252 0.748 48 H 0.090 0.910 49 H 0.072 0.928 50 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 -10.878 -12.680 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.076 4.076 3 C -0.093 4.093 4 C -0.133 4.133 5 C 0.345 3.655 6 O -0.405 6.405 7 N -0.322 5.322 8 C -0.048 4.048 9 C -0.172 4.172 10 C -0.143 4.143 11 C -0.127 4.127 12 H 0.090 0.910 13 C 0.060 3.940 14 H 0.051 0.949 15 C -0.169 4.169 16 C -0.188 4.188 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.351 4.351 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.567 5.567 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.007 4.007 28 C -0.119 4.119 29 N -0.078 5.078 30 N -0.077 5.077 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.036 0.964 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.185 -11.942 -12.705 19.262 hybrid contribution -0.443 1.765 0.906 2.033 sum -8.628 -10.177 -11.799 17.811 Atomic orbital electron populations 1.20725 0.86805 1.04408 1.04027 1.22943 0.99440 0.89819 0.95391 1.22461 0.92976 1.00709 0.93184 1.21273 0.95347 0.95594 1.01086 1.17922 0.81151 0.86812 0.79619 1.90800 1.70740 1.34346 1.44628 1.48065 1.17727 1.13307 1.53146 1.22724 0.99834 0.87205 0.95018 1.21947 1.00963 0.99901 0.94415 1.21507 0.96585 0.92640 1.03614 1.21998 1.00448 0.97343 0.92935 0.91037 1.20853 0.92452 0.93130 0.87578 0.94863 1.22723 0.96186 1.00272 0.97689 1.23032 0.96882 0.99396 0.99495 1.21563 0.83150 0.99987 0.90955 1.44481 1.03298 1.79145 1.04477 1.18921 0.91846 1.38413 0.85910 0.90898 1.24767 0.96514 1.01896 0.97007 1.69900 1.13644 1.54892 1.18267 0.86269 0.79930 0.78395 0.81592 1.21306 1.21621 1.21201 1.21928 0.94405 0.85567 0.98755 1.25134 1.03316 0.88784 0.94688 1.73099 0.99203 1.26663 1.08802 1.72813 1.01982 1.24948 1.07962 0.89455 0.89892 0.89612 0.82204 0.88535 0.90294 0.91696 0.90822 0.92428 0.89293 0.91483 0.92561 0.92485 0.92580 0.89947 0.96350 0.93728 0.89188 0.91018 0.79020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.00 0.37 -0.25 16 2 C 0.07 0.67 6.86 -82.45 -0.57 0.11 16 3 C -0.06 -0.66 9.48 -38.78 -0.37 -1.02 16 4 C -0.12 -1.37 5.57 -104.57 -0.58 -1.95 16 5 C 0.56 7.65 7.51 -12.20 -0.09 7.55 16 6 O -0.53 -8.83 16.28 5.36 0.09 -8.74 16 7 N -0.59 -7.56 2.97 -173.77 -0.52 -8.08 16 8 C 0.07 0.77 4.96 -3.71 -0.02 0.76 16 9 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 10 C -0.11 -1.67 4.74 -26.69 -0.13 -1.80 16 11 C -0.11 -1.76 2.11 -90.49 -0.19 -1.96 16 12 H 0.07 1.40 8.00 -51.93 -0.42 0.98 16 13 C 0.17 3.18 2.93 -66.95 -0.20 2.98 16 14 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 15 C -0.13 -2.09 5.13 -24.84 -0.13 -2.22 16 16 C -0.15 -2.67 7.10 -24.52 -0.17 -2.84 16 17 C 0.17 3.83 5.56 -2.53 -0.01 3.82 16 18 N -0.59 -13.82 2.35 -162.57 -0.38 -14.20 16 19 C -0.22 -5.85 9.84 -15.06 -0.15 -5.99 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 22 N -0.92 -25.84 10.34 55.49 0.57 -25.27 16 23 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.12 1.62 5.59 -3.71 -0.02 1.60 16 28 C 0.04 0.47 8.82 -16.95 -0.15 0.32 16 29 N -0.24 -2.89 11.49 30.54 0.35 -2.54 16 30 N -0.23 -2.80 11.40 33.58 0.38 -2.42 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.16 1.43 8.05 -52.49 -0.42 1.01 16 35 H 0.10 0.89 3.52 -52.60 -0.18 0.70 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.84 6.06 -51.93 -0.31 0.52 16 40 H 0.09 1.80 7.57 -51.93 -0.39 1.40 16 41 H 0.07 0.99 5.54 -51.93 -0.29 0.70 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 2.15 6.47 -51.93 -0.34 1.82 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 49 H 0.07 0.91 7.02 -51.93 -0.36 0.54 16 50 H 0.19 1.54 5.33 -52.49 -0.28 1.26 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -31.27 383.86 -8.96 -40.23 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.56 Total: 1.64 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.66 Total: -3.02 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.41 Total: -52.50 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.27 -8.96 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963293733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.277 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds