Wall clock time and date at job start Wed Apr 1 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38547 * 120.01537 * 2 1 4 4 C 1.40079 * 117.81784 * 180.26211 * 3 2 1 5 5 C 1.48135 * 121.14704 * 179.73760 * 4 3 2 6 6 O 1.21511 * 119.99822 * 328.17266 * 5 4 3 7 7 N 1.34774 * 119.99967 * 148.16437 * 5 4 3 8 8 C 1.46933 * 120.62879 * 1.30772 * 7 5 4 9 9 C 1.53192 * 108.77215 * 233.62630 * 8 7 5 10 10 C 1.53041 * 109.34077 * 305.37820 * 9 8 7 11 11 C 1.53043 * 109.53453 * 61.32049 * 10 9 8 12 12 H 1.08996 * 109.49960 * 58.65441 * 11 10 9 13 13 C 1.53003 * 109.49444 * 178.71343 * 11 10 9 14 14 H 1.09001 * 109.87477 * 179.48626 * 13 11 10 15 15 C 1.54324 * 110.01036 * 58.38972 * 13 11 10 16 16 C 1.55269 * 103.00956 * 218.39403 * 15 13 11 17 17 C 1.54913 * 101.52907 * 35.36138 * 16 15 13 18 18 N 1.47019 * 109.88598 * 300.50470 * 13 11 10 19 19 C 1.36940 * 125.64858 * 298.53880 * 18 13 11 20 20 H 1.08003 * 119.99749 * 351.50638 * 19 18 13 21 21 C 1.38808 * 120.00039 * 171.51373 * 19 18 13 22 22 N 1.31613 * 120.00337 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99891 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47150 * 59.99911 * 23 21 19 25 25 H 1.48497 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46805 * 300.00052 * 23 21 19 27 27 C 1.46923 * 120.63240 * 181.32224 * 7 5 4 28 28 C 1.39770 * 117.70526 * 359.47015 * 4 3 2 29 29 N 1.31895 * 119.65772 * 0.27548 * 28 4 3 30 30 N 1.28274 * 122.32613 * 359.97438 * 29 28 4 31 31 H 1.09004 * 109.47085 * 270.27548 * 1 2 3 32 32 H 1.08996 * 109.47273 * 30.28267 * 1 2 3 33 33 H 1.09000 * 109.47171 * 150.28366 * 1 2 3 34 34 H 1.08001 * 121.09234 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.58605 * 353.41413 * 8 7 5 36 36 H 1.09005 * 109.58485 * 113.84251 * 8 7 5 37 37 H 1.08992 * 109.49801 * 65.31836 * 9 8 7 38 38 H 1.09004 * 109.49595 * 185.38638 * 9 8 7 39 39 H 1.08992 * 109.43558 * 301.31693 * 10 9 8 40 40 H 1.09004 * 109.48719 * 181.35328 * 10 9 8 41 41 H 1.08995 * 110.72426 * 336.68134 * 15 13 11 42 42 H 1.09004 * 110.71967 * 99.95186 * 15 13 11 43 43 H 1.09004 * 110.95892 * 277.33395 * 16 15 13 44 44 H 1.09000 * 111.10423 * 153.45375 * 16 15 13 45 45 H 1.08999 * 110.37041 * 204.23394 * 17 16 15 46 46 H 1.09000 * 110.36083 * 82.01748 * 17 16 15 47 47 H 0.96997 * 120.00291 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58886 * 6.59173 * 27 7 5 49 49 H 1.08998 * 109.70877 * 246.23058 * 27 7 5 50 50 H 1.07999 * 120.17270 * 180.29072 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1460 -0.0057 5 6 4.4140 2.3835 -0.0119 6 8 3.9987 3.3812 -0.5674 7 7 5.6153 2.4027 0.5988 8 6 6.1434 1.1962 1.2502 9 6 6.5150 1.5392 2.6962 10 6 7.4768 2.7296 2.7037 11 6 6.7900 3.9463 2.0792 12 1 5.8861 4.1820 2.6408 13 6 7.7410 5.1443 2.1162 14 1 7.2611 6.0125 1.6644 15 6 9.0421 4.8094 1.3568 16 6 10.1371 5.4891 2.2227 17 6 9.5711 5.2887 3.6508 18 7 8.1123 5.4453 3.5065 19 6 7.2465 5.8101 4.5027 20 1 6.2155 6.0305 4.2682 21 6 7.6938 5.8967 5.8139 22 7 8.9503 5.6288 6.0996 23 14 6.5128 6.3950 7.1727 24 1 5.3946 5.4202 7.2388 25 1 7.2321 6.4129 8.4717 26 1 5.9731 7.7489 6.8875 27 6 6.4216 3.6307 0.6261 28 6 4.2017 -0.1155 0.0005 29 7 3.4483 -1.1981 0.0058 30 7 2.1668 -1.1420 0.0060 31 1 -0.3633 0.0049 1.0277 32 1 -0.3633 0.8874 -0.5182 33 1 -0.3633 -0.8925 -0.5094 34 1 1.6782 2.1452 0.0004 35 1 5.3833 0.4151 1.2437 36 1 7.0295 0.8513 0.7172 37 1 5.6136 1.7969 3.2521 38 1 6.9963 0.6792 3.1620 39 1 8.3675 2.4798 2.1273 40 1 7.7617 2.9605 3.7302 41 1 9.1986 3.7315 1.3165 42 1 9.0235 5.2352 0.3535 43 1 10.2230 6.5486 1.9816 44 1 11.0968 4.9851 2.1085 45 1 9.9690 6.0460 4.3263 46 1 9.8111 4.2906 4.0173 47 1 9.2630 5.6896 7.0158 48 1 5.8450 4.4558 0.2079 49 1 7.3303 3.4868 0.0417 50 1 5.2781 -0.2033 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963293733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:57 Heat of formation + Delta-G solvation = 48.523378 kcal Electronic energy + Delta-G solvation = -31152.807450 eV Core-core repulsion = 27181.094942 eV Total energy + Delta-G solvation = -3971.712508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61982 -41.19882 -39.81457 -37.94548 -35.35648 -34.90813 -34.42227 -33.48547 -32.50413 -31.19792 -29.44064 -28.42347 -27.22004 -26.48366 -25.86503 -24.51384 -23.88535 -22.65963 -21.91563 -20.83938 -19.86057 -19.44039 -18.59415 -17.91531 -17.86486 -17.21395 -16.88487 -16.63041 -16.20592 -15.92873 -15.67995 -15.61888 -15.51886 -14.91741 -14.71576 -14.45371 -14.31382 -14.07054 -13.88033 -13.78954 -13.63211 -13.31616 -13.22494 -13.17357 -12.89612 -12.74519 -12.48903 -12.20155 -12.06345 -12.01046 -11.79788 -11.76324 -11.73101 -11.51096 -11.44490 -11.33340 -11.21917 -10.92914 -10.81146 -10.66308 -10.58159 -9.78141 -8.78092 -7.80838 -5.16109 -0.80230 -0.31090 1.39598 1.42607 1.43707 1.49995 1.70448 2.36384 2.48784 2.85002 3.00715 3.24326 3.34145 3.37217 3.64751 3.69166 3.72450 3.86793 3.96538 4.07844 4.09792 4.21281 4.28306 4.29371 4.34801 4.40317 4.48055 4.52579 4.57846 4.71857 4.72026 4.77958 4.78823 4.81004 4.83727 4.90525 4.95746 5.09566 5.16230 5.23067 5.24409 5.27780 5.35634 5.49174 5.50409 5.57741 5.66633 5.75946 5.86595 6.14660 6.30406 6.79998 7.15399 7.48162 7.84833 8.49527 9.26530 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003001 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.065723 B = 9328.907664 C =10267.439459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.072 3.928 3 C -0.065 4.065 4 C -0.131 4.131 5 C 0.560 3.440 6 O -0.565 6.565 7 N -0.590 5.590 8 C 0.078 3.922 9 C -0.129 4.129 10 C -0.097 4.097 11 C -0.094 4.094 12 H 0.031 0.969 13 C 0.158 3.842 14 H 0.022 0.978 15 C -0.116 4.116 16 C -0.138 4.138 17 C 0.173 3.827 18 N -0.607 5.607 19 C -0.224 4.224 20 H 0.067 0.933 21 C -0.059 4.059 22 N -0.944 5.944 23 Si 0.963 3.037 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.126 3.874 28 C 0.052 3.948 29 N -0.258 5.258 30 N -0.256 5.256 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.171 0.829 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.041 0.959 46 H -0.004 1.004 47 H 0.245 0.755 48 H 0.074 0.926 49 H 0.100 0.900 50 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 -12.530 -14.922 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.073 4.073 3 C -0.094 4.094 4 C -0.145 4.145 5 C 0.348 3.652 6 O -0.444 6.444 7 N -0.321 5.321 8 C -0.043 4.043 9 C -0.168 4.168 10 C -0.135 4.135 11 C -0.115 4.115 12 H 0.050 0.950 13 C 0.051 3.949 14 H 0.039 0.961 15 C -0.154 4.154 16 C -0.176 4.176 17 C 0.048 3.952 18 N -0.331 5.331 19 C -0.354 4.354 20 H 0.084 0.916 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.793 3.207 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.208 1.208 27 C 0.004 3.996 28 C -0.113 4.113 29 N -0.097 5.097 30 N -0.099 5.099 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.054 0.946 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.524 -13.628 -14.971 21.967 hybrid contribution -0.404 2.320 1.604 2.850 sum -8.928 -11.308 -13.367 19.654 Atomic orbital electron populations 1.20877 0.84253 1.05643 1.05124 1.23418 1.01010 0.88863 0.93986 1.22716 0.92841 1.01517 0.92373 1.21175 0.95698 0.95055 1.02548 1.18179 0.81095 0.86984 0.78976 1.90780 1.71466 1.35827 1.46340 1.48102 1.17486 1.13554 1.52928 1.22932 1.01712 0.86408 0.93270 1.21894 0.99302 0.99227 0.96331 1.21366 0.98075 0.93435 1.00622 1.21747 0.98207 0.96937 0.94658 0.95017 1.21083 0.94770 0.93600 0.85434 0.96057 1.22710 0.92899 1.01533 0.98247 1.22906 0.98527 1.00144 0.96026 1.21335 0.83137 0.97252 0.93508 1.44663 1.03491 1.79183 1.05728 1.19128 0.92041 1.37242 0.86983 0.91556 1.25423 0.97869 1.03024 0.98914 1.70110 1.14916 1.56486 1.17866 0.85384 0.78215 0.78091 0.79056 1.20972 1.21940 1.20806 1.21712 0.95462 0.86019 0.96442 1.25417 1.04289 0.87803 0.93766 1.73052 0.99575 1.27403 1.09673 1.72756 1.02239 1.26121 1.08826 0.88259 0.87973 0.89066 0.81172 0.86947 0.86646 0.93999 0.88703 0.90276 0.94438 0.89500 0.89262 0.92495 0.89828 0.94082 0.98627 0.94563 0.90700 0.88162 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.19 71.23 0.73 -0.27 16 2 C 0.07 1.29 6.86 42.62 0.29 1.58 16 3 C -0.06 -1.23 9.48 22.79 0.22 -1.02 16 4 C -0.13 -2.78 5.57 -19.83 -0.11 -2.89 16 5 C 0.56 14.47 7.51 86.87 0.65 15.12 16 6 O -0.56 -18.46 16.28 -3.75 -0.06 -18.52 16 7 N -0.59 -13.77 2.97 -821.98 -2.44 -16.22 16 8 C 0.08 1.35 4.96 86.36 0.43 1.78 16 9 C -0.13 -3.07 6.08 30.67 0.19 -2.89 16 10 C -0.10 -3.00 4.74 30.62 0.15 -2.85 16 11 C -0.09 -3.12 2.11 -10.71 -0.02 -3.15 16 12 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 13 C 0.16 5.93 2.93 45.34 0.13 6.07 16 14 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 15 C -0.12 -3.37 5.13 31.82 0.16 -3.21 16 16 C -0.14 -4.69 7.10 32.03 0.23 -4.46 16 17 C 0.17 8.08 5.56 86.86 0.48 8.56 16 18 N -0.61 -29.33 2.35 -668.25 -1.57 -30.90 16 19 C -0.22 -12.30 9.84 84.03 0.83 -11.47 16 20 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 21 C -0.06 -3.32 5.48 84.86 0.47 -2.85 16 22 N -0.94 -55.54 10.34 21.65 0.22 -55.32 16 23 Si 0.96 45.97 29.55 68.60 2.03 48.00 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 C 0.13 3.30 5.59 86.36 0.48 3.79 16 28 C 0.05 0.95 8.82 85.05 0.75 1.70 16 29 N -0.26 -5.78 11.49 -57.28 -0.66 -6.43 16 30 N -0.26 -5.75 11.40 -47.69 -0.54 -6.30 16 31 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.10 0.62 8.09 -2.39 -0.02 0.61 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.17 2.81 8.05 -2.91 -0.02 2.78 16 35 H 0.11 1.68 3.52 -3.02 -0.01 1.67 16 36 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.08 2.08 6.06 -2.39 -0.01 2.06 16 40 H 0.04 1.55 7.57 -2.38 -0.02 1.53 16 41 H 0.09 2.20 5.54 -2.39 -0.01 2.18 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.04 2.24 6.47 -2.39 -0.02 2.23 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 47 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.07 2.24 7.01 -2.39 -0.02 2.23 16 49 H 0.10 2.11 7.02 -2.39 -0.02 2.10 16 50 H 0.22 2.66 5.33 -2.91 -0.02 2.64 16 Total: -1.00 -73.24 383.86 3.97 -69.27 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.95 Total: 12.88 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 6.04 Total: 3.54 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -4.99 Total: -115.17 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -73.24 3.97 -69.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963293733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.792 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds