Wall clock time and date at job start Wed Apr 1 2020 03:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38572 * 119.96408 * 2 1 4 4 C 1.38820 * 118.07290 * 179.73358 * 3 2 1 5 5 C 1.39717 * 117.89421 * 0.52290 * 4 3 2 6 6 C 1.48153 * 120.18309 * 179.76859 * 5 4 3 7 7 O 1.21509 * 120.00196 * 9.57884 * 6 5 4 8 8 N 1.34777 * 120.00028 * 189.58032 * 6 5 4 9 9 C 1.46929 * 120.63317 * 7.70201 * 8 6 5 10 10 C 1.53187 * 108.77790 * 126.41214 * 9 8 6 11 11 C 1.53032 * 109.31426 * 54.63913 * 10 9 8 12 12 C 1.53043 * 109.53665 * 298.63086 * 11 10 9 13 13 H 1.08994 * 109.49868 * 301.38724 * 12 11 10 14 14 C 1.52997 * 109.49953 * 181.31377 * 12 11 10 15 15 H 1.08998 * 109.87585 * 306.06933 * 14 12 11 16 16 C 1.54331 * 109.88555 * 184.88997 * 14 12 11 17 17 C 1.55156 * 102.94076 * 218.39429 * 16 14 12 18 18 C 1.54683 * 101.68143 * 35.33372 * 17 16 14 19 19 N 1.47024 * 109.88110 * 67.08204 * 14 12 11 20 20 C 1.36940 * 125.65096 * 298.32484 * 19 14 12 21 21 H 1.07995 * 120.00086 * 135.55349 * 20 19 14 22 22 C 1.38815 * 119.99456 * 315.55015 * 20 19 14 23 23 N 1.31618 * 119.99407 * 175.33702 * 22 20 19 24 24 Si 1.86800 * 120.00144 * 355.34166 * 22 20 19 25 25 H 1.48500 * 109.47507 * 83.95218 * 24 22 20 26 26 H 1.48500 * 109.47143 * 323.94988 * 24 22 20 27 27 H 1.48504 * 109.46793 * 203.95222 * 24 22 20 28 28 C 1.46924 * 120.63180 * 187.72400 * 8 6 5 29 29 N 1.32788 * 119.63768 * 359.48888 * 5 4 3 30 30 N 1.28356 * 122.02460 * 0.25325 * 29 5 4 31 31 H 1.09000 * 109.47105 * 269.97366 * 1 2 3 32 32 H 1.09000 * 109.47606 * 29.97515 * 1 2 3 33 33 H 1.09006 * 109.47023 * 149.98101 * 1 2 3 34 34 H 1.08004 * 120.96477 * 359.97438 * 3 2 1 35 35 H 1.07996 * 121.05330 * 180.29291 * 4 3 2 36 36 H 1.09004 * 109.58463 * 6.62131 * 9 8 6 37 37 H 1.09004 * 109.58672 * 246.20609 * 9 8 6 38 38 H 1.08998 * 109.49970 * 294.68381 * 10 9 8 39 39 H 1.09005 * 109.52243 * 174.60411 * 10 9 8 40 40 H 1.09003 * 109.46519 * 178.61501 * 11 10 9 41 41 H 1.08999 * 109.45342 * 58.64445 * 11 10 9 42 42 H 1.08997 * 110.71564 * 336.75592 * 16 14 12 43 43 H 1.08997 * 110.71515 * 100.02495 * 16 14 12 44 44 H 1.09007 * 111.00012 * 153.57653 * 17 16 14 45 45 H 1.08997 * 110.99970 * 277.42086 * 17 16 14 46 46 H 1.08993 * 110.39521 * 204.36278 * 18 17 16 47 47 H 1.09003 * 110.23719 * 82.11191 * 18 17 16 48 48 H 0.97002 * 119.99601 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58859 * 113.79842 * 28 8 6 50 50 H 1.09000 * 109.58830 * 353.37324 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1547 0.0057 5 6 4.1991 -0.1010 -0.0002 6 6 5.6767 -0.2090 0.0003 7 8 6.3582 0.7807 0.1809 8 7 6.2651 -1.4049 -0.1996 9 6 5.4671 -2.5768 -0.5852 10 6 6.0685 -3.1866 -1.8553 11 6 7.5508 -3.4855 -1.6203 12 6 8.2929 -2.1831 -1.3118 13 1 8.1697 -1.4885 -2.1427 14 6 9.7804 -2.4785 -1.1093 15 1 9.9048 -3.2520 -0.3516 16 6 10.5169 -1.1929 -0.6775 17 6 11.8675 -1.2952 -1.4343 18 6 11.4335 -1.9627 -2.7605 19 7 10.3796 -2.9198 -2.3773 20 6 10.0221 -4.0379 -3.0826 21 1 9.8981 -3.9837 -4.1541 22 6 9.8190 -5.2408 -2.4203 23 7 9.3868 -6.2923 -3.0835 24 14 10.1592 -5.3671 -0.5878 25 1 8.9750 -4.8884 0.1697 26 1 11.3376 -4.5312 -0.2444 27 1 10.4354 -6.7821 -0.2321 28 6 7.7167 -1.5618 -0.0354 29 7 3.4498 -1.1972 -0.0006 30 7 2.1673 -1.1450 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6743 2.1445 -0.0004 35 1 4.1739 2.0610 0.0107 36 1 4.4387 -2.2711 -0.7782 37 1 5.4869 -3.3129 0.2184 38 1 5.9658 -2.4824 -2.6809 39 1 5.5450 -4.1112 -2.0986 40 1 7.9754 -3.9423 -2.5144 41 1 7.6540 -4.1704 -0.7787 42 1 9.9644 -0.3077 -0.9926 43 1 10.6783 -1.1846 0.4004 44 1 12.2912 -0.3069 -1.6127 45 1 12.5710 -1.9285 -0.8939 46 1 12.2744 -2.4864 -3.2151 47 1 11.0356 -1.2149 -3.4465 48 1 9.2452 -7.1330 -2.6207 49 1 7.9200 -2.2152 0.8130 50 1 8.1728 -0.5865 0.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963300843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:09 Heat of formation + Delta-G solvation = 68.948090 kcal Electronic energy + Delta-G solvation = -31595.225069 eV Core-core repulsion = 27624.398243 eV Total energy + Delta-G solvation = -3970.826826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60957 -39.85559 -38.37908 -36.55996 -34.54712 -33.38880 -32.95175 -32.34491 -31.13880 -29.94017 -29.00171 -26.90967 -25.88881 -24.68493 -24.45694 -23.35170 -22.54776 -21.05380 -20.15290 -19.79089 -19.41755 -18.17967 -17.15551 -16.74978 -16.22533 -15.98648 -15.75905 -15.51293 -14.92824 -14.64575 -14.60886 -14.02542 -13.76030 -13.56732 -13.39541 -13.36372 -13.30874 -13.08560 -12.81177 -12.70901 -12.59960 -12.16819 -12.02340 -11.86687 -11.48638 -11.08687 -11.03125 -10.78234 -10.71891 -10.59581 -10.48882 -10.35298 -10.29743 -10.09823 -10.07494 -10.01051 -9.80562 -9.56828 -9.26556 -9.14959 -8.55632 -8.17388 -6.64375 -6.00637 -3.52766 0.15134 0.40582 2.49603 2.88694 3.29694 3.35985 3.44481 3.48587 3.56091 3.99211 4.15247 4.28149 4.48671 4.53271 4.59364 4.99581 5.01451 5.07291 5.17509 5.24733 5.31711 5.41748 5.43031 5.53250 5.56690 5.58994 5.62620 5.65219 5.74929 5.75697 5.84483 5.98597 6.04106 6.12113 6.24368 6.29704 6.37089 6.40629 6.43775 6.47533 6.51851 6.71987 6.73772 6.88681 6.92424 6.95981 7.21048 7.48972 7.61663 8.01039 8.06699 8.27110 8.35887 8.86544 9.63141 10.29908 11.12960 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.003304 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.103846 B = 8473.746646 C = 9488.845213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.081 3.919 3 C -0.123 4.123 4 C -0.062 4.062 5 C 0.025 3.975 6 C 0.569 3.431 7 O -0.539 6.539 8 N -0.577 5.577 9 C 0.076 3.924 10 C -0.130 4.130 11 C -0.144 4.144 12 C -0.093 4.093 13 H 0.069 0.931 14 C 0.150 3.850 15 H 0.035 0.965 16 C -0.130 4.130 17 C -0.136 4.136 18 C 0.131 3.869 19 N -0.603 5.603 20 C -0.247 4.247 21 H 0.080 0.920 22 C 0.047 3.953 23 N -0.905 5.905 24 Si 0.890 3.110 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.307 1.307 28 C 0.109 3.891 29 N -0.196 5.196 30 N -0.248 5.248 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.131 0.869 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.024 0.976 48 H 0.265 0.735 49 H 0.065 0.935 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.673 14.601 7.315 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.152 4.152 4 C -0.091 4.091 5 C -0.120 4.120 6 C 0.353 3.647 7 O -0.416 6.416 8 N -0.307 5.307 9 C -0.047 4.047 10 C -0.168 4.168 11 C -0.180 4.180 12 C -0.114 4.114 13 H 0.088 0.912 14 C 0.043 3.957 15 H 0.052 0.948 16 C -0.168 4.168 17 C -0.175 4.175 18 C 0.006 3.994 19 N -0.329 5.329 20 C -0.375 4.375 21 H 0.097 0.903 22 C -0.155 4.155 23 N -0.545 5.545 24 Si 0.722 3.278 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.235 1.235 28 C -0.013 4.013 29 N -0.042 5.042 30 N -0.092 5.092 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.147 0.853 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.403 13.196 7.348 20.870 hybrid contribution 0.186 1.231 1.118 1.674 sum -14.217 14.427 8.467 21.953 Atomic orbital electron populations 1.20747 0.87089 1.04422 1.03888 1.23080 0.99334 0.90497 0.93258 1.22325 0.94211 1.00169 0.98453 1.22431 0.95036 0.99126 0.92532 1.22970 0.96683 0.92021 1.00370 1.17589 0.85067 0.83718 0.78290 1.90766 1.63466 1.35990 1.51384 1.48045 1.09017 1.08968 1.64635 1.22932 0.97456 0.86793 0.97483 1.21935 0.98173 1.00370 0.96352 1.22266 0.92811 0.96761 1.06207 1.21848 0.96315 0.97725 0.95515 0.91214 1.21259 0.90477 0.93365 0.90563 0.94799 1.22643 0.96723 0.98209 0.99228 1.22723 0.96706 0.99781 0.98269 1.21683 0.91599 0.92167 0.93976 1.44615 1.37084 1.26764 1.24407 1.18378 1.43140 0.83664 0.92350 0.90294 1.25565 0.97312 0.94740 0.97884 1.69752 1.47339 1.01448 1.36007 0.86975 0.79116 0.74969 0.86693 1.19850 1.19886 1.23543 1.21993 0.78100 1.02119 0.99092 1.73311 0.99275 1.24812 1.06780 1.73157 1.01459 1.24795 1.09759 0.89509 0.89999 0.89556 0.82534 0.81946 0.85299 0.91522 0.92499 0.91051 0.85469 0.92656 0.91258 0.92055 0.91925 0.91879 0.93360 0.95853 0.92498 0.91683 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.19 36.01 0.37 -0.14 16 2 C 0.08 0.72 6.87 -82.32 -0.57 0.15 16 3 C -0.12 -0.92 9.86 -39.24 -0.39 -1.31 16 4 C -0.06 -0.64 9.73 -38.81 -0.38 -1.01 16 5 C 0.03 0.34 6.65 -82.83 -0.55 -0.21 16 6 C 0.57 9.25 7.66 -12.19 -0.09 9.16 16 7 O -0.54 -9.67 15.86 5.36 0.08 -9.58 16 8 N -0.58 -9.72 2.97 -173.76 -0.52 -10.24 16 9 C 0.08 1.23 5.89 -3.71 -0.02 1.21 16 10 C -0.13 -2.32 6.08 -26.62 -0.16 -2.48 16 11 C -0.14 -3.03 3.69 -26.69 -0.10 -3.13 16 12 C -0.09 -1.84 1.97 -90.49 -0.18 -2.02 16 13 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 14 C 0.15 3.15 1.98 -66.95 -0.13 3.02 16 15 H 0.03 0.79 3.33 -51.93 -0.17 0.62 16 16 C -0.13 -2.28 5.43 -24.89 -0.14 -2.42 16 17 C -0.14 -2.34 7.07 -24.70 -0.17 -2.51 16 18 C 0.13 2.64 7.22 -2.65 -0.02 2.62 16 19 N -0.60 -14.16 2.62 -162.71 -0.43 -14.59 16 20 C -0.25 -6.66 8.30 -15.06 -0.12 -6.79 16 21 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 22 C 0.05 1.28 3.93 -17.43 -0.07 1.21 16 23 N -0.90 -26.43 13.97 55.49 0.78 -25.65 16 24 Si 0.89 22.22 23.05 -169.99 -3.92 18.30 16 25 H -0.27 -6.42 5.37 56.52 0.30 -6.12 16 26 H -0.27 -6.82 6.92 56.52 0.39 -6.43 16 27 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 28 C 0.11 1.93 5.29 -3.71 -0.02 1.91 16 29 N -0.20 -2.74 7.36 33.32 0.25 -2.50 16 30 N -0.25 -3.07 11.43 33.63 0.38 -2.69 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.16 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.16 1.44 7.75 -52.49 -0.41 1.03 16 36 H 0.13 1.99 4.05 -127.08 -0.51 1.48 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.13 3.16 4.40 -51.93 -0.23 2.94 16 41 H 0.05 1.23 5.38 -51.93 -0.28 0.95 16 42 H 0.07 1.16 7.28 -51.93 -0.38 0.78 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.09 1.58 5.84 -51.93 -0.30 1.27 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -31.70 372.70 -8.36 -40.06 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.87 Total: 4.02 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.74 Total: -2.76 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.46 Total: -55.67 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -3.92 Total: 18.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.70 -8.36 -40.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963300843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.006 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds