Wall clock time and date at job start Wed Apr 1 2020 03:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38572 * 119.96408 * 2 1 4 4 C 1.38820 * 118.07290 * 179.73358 * 3 2 1 5 5 C 1.39717 * 117.89421 * 0.52290 * 4 3 2 6 6 C 1.48153 * 120.18309 * 179.76859 * 5 4 3 7 7 O 1.21509 * 120.00196 * 9.57884 * 6 5 4 8 8 N 1.34777 * 120.00028 * 189.58032 * 6 5 4 9 9 C 1.46929 * 120.63317 * 7.70201 * 8 6 5 10 10 C 1.53187 * 108.77790 * 126.41214 * 9 8 6 11 11 C 1.53032 * 109.31426 * 54.63913 * 10 9 8 12 12 C 1.53043 * 109.53665 * 298.63086 * 11 10 9 13 13 H 1.08994 * 109.49868 * 301.38724 * 12 11 10 14 14 C 1.52997 * 109.49953 * 181.31377 * 12 11 10 15 15 H 1.08998 * 109.87585 * 306.06933 * 14 12 11 16 16 C 1.54331 * 109.88555 * 184.88997 * 14 12 11 17 17 C 1.55156 * 102.94076 * 218.39429 * 16 14 12 18 18 C 1.54683 * 101.68143 * 35.33372 * 17 16 14 19 19 N 1.47024 * 109.88110 * 67.08204 * 14 12 11 20 20 C 1.36940 * 125.65096 * 298.32484 * 19 14 12 21 21 H 1.07995 * 120.00086 * 135.55349 * 20 19 14 22 22 C 1.38815 * 119.99456 * 315.55015 * 20 19 14 23 23 N 1.31618 * 119.99407 * 175.33702 * 22 20 19 24 24 Si 1.86800 * 120.00144 * 355.34166 * 22 20 19 25 25 H 1.48500 * 109.47507 * 83.95218 * 24 22 20 26 26 H 1.48500 * 109.47143 * 323.94988 * 24 22 20 27 27 H 1.48504 * 109.46793 * 203.95222 * 24 22 20 28 28 C 1.46924 * 120.63180 * 187.72400 * 8 6 5 29 29 N 1.32788 * 119.63768 * 359.48888 * 5 4 3 30 30 N 1.28356 * 122.02460 * 0.25325 * 29 5 4 31 31 H 1.09000 * 109.47105 * 269.97366 * 1 2 3 32 32 H 1.09000 * 109.47606 * 29.97515 * 1 2 3 33 33 H 1.09006 * 109.47023 * 149.98101 * 1 2 3 34 34 H 1.08004 * 120.96477 * 359.97438 * 3 2 1 35 35 H 1.07996 * 121.05330 * 180.29291 * 4 3 2 36 36 H 1.09004 * 109.58463 * 6.62131 * 9 8 6 37 37 H 1.09004 * 109.58672 * 246.20609 * 9 8 6 38 38 H 1.08998 * 109.49970 * 294.68381 * 10 9 8 39 39 H 1.09005 * 109.52243 * 174.60411 * 10 9 8 40 40 H 1.09003 * 109.46519 * 178.61501 * 11 10 9 41 41 H 1.08999 * 109.45342 * 58.64445 * 11 10 9 42 42 H 1.08997 * 110.71564 * 336.75592 * 16 14 12 43 43 H 1.08997 * 110.71515 * 100.02495 * 16 14 12 44 44 H 1.09007 * 111.00012 * 153.57653 * 17 16 14 45 45 H 1.08997 * 110.99970 * 277.42086 * 17 16 14 46 46 H 1.08993 * 110.39521 * 204.36278 * 18 17 16 47 47 H 1.09003 * 110.23719 * 82.11191 * 18 17 16 48 48 H 0.97002 * 119.99601 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58859 * 113.79842 * 28 8 6 50 50 H 1.09000 * 109.58830 * 353.37324 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1547 0.0057 5 6 4.1991 -0.1010 -0.0002 6 6 5.6767 -0.2090 0.0003 7 8 6.3582 0.7807 0.1809 8 7 6.2651 -1.4049 -0.1996 9 6 5.4671 -2.5768 -0.5852 10 6 6.0685 -3.1866 -1.8553 11 6 7.5508 -3.4855 -1.6203 12 6 8.2929 -2.1831 -1.3118 13 1 8.1697 -1.4885 -2.1427 14 6 9.7804 -2.4785 -1.1093 15 1 9.9048 -3.2520 -0.3516 16 6 10.5169 -1.1929 -0.6775 17 6 11.8675 -1.2952 -1.4343 18 6 11.4335 -1.9627 -2.7605 19 7 10.3796 -2.9198 -2.3773 20 6 10.0221 -4.0379 -3.0826 21 1 9.8981 -3.9837 -4.1541 22 6 9.8190 -5.2408 -2.4203 23 7 9.3868 -6.2923 -3.0835 24 14 10.1592 -5.3671 -0.5878 25 1 8.9750 -4.8884 0.1697 26 1 11.3376 -4.5312 -0.2444 27 1 10.4354 -6.7821 -0.2321 28 6 7.7167 -1.5618 -0.0354 29 7 3.4498 -1.1972 -0.0006 30 7 2.1673 -1.1450 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6743 2.1445 -0.0004 35 1 4.1739 2.0610 0.0107 36 1 4.4387 -2.2711 -0.7782 37 1 5.4869 -3.3129 0.2184 38 1 5.9658 -2.4824 -2.6809 39 1 5.5450 -4.1112 -2.0986 40 1 7.9754 -3.9423 -2.5144 41 1 7.6540 -4.1704 -0.7787 42 1 9.9644 -0.3077 -0.9926 43 1 10.6783 -1.1846 0.4004 44 1 12.2912 -0.3069 -1.6127 45 1 12.5710 -1.9285 -0.8939 46 1 12.2744 -2.4864 -3.2151 47 1 11.0356 -1.2149 -3.4465 48 1 9.2452 -7.1330 -2.6207 49 1 7.9200 -2.2152 0.8130 50 1 8.1728 -0.5865 0.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963300843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:08 Heat of formation + Delta-G solvation = 48.339486 kcal Electronic energy + Delta-G solvation = -31596.118725 eV Core-core repulsion = 27624.398243 eV Total energy + Delta-G solvation = -3971.720482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.51436 -41.15308 -39.88285 -38.00019 -35.36631 -34.83603 -34.22163 -33.82096 -32.64587 -31.75456 -29.75974 -28.34695 -27.01162 -26.36004 -25.68991 -24.29310 -23.95587 -22.40371 -21.72047 -21.46809 -20.81924 -19.23942 -18.69090 -18.12933 -17.49299 -17.19230 -16.92186 -16.74759 -16.46055 -15.78658 -15.65838 -15.44569 -15.31900 -14.98442 -14.87147 -14.71772 -14.35592 -14.23965 -14.09661 -13.73766 -13.66247 -13.62569 -13.41775 -13.19773 -12.94024 -12.88158 -12.58230 -12.36118 -12.11712 -12.09608 -11.91414 -11.86581 -11.84416 -11.55184 -11.36570 -11.24033 -11.02346 -10.91251 -10.85578 -10.51623 -10.33714 -9.73017 -8.59392 -8.16626 -5.66039 -0.68552 -0.32754 1.28571 1.36965 1.44425 1.46283 1.70469 2.39948 2.44502 2.64731 3.12077 3.21884 3.33263 3.38658 3.58196 3.73766 3.78125 3.88908 3.97521 4.06490 4.09161 4.13512 4.16475 4.23102 4.35633 4.51260 4.52324 4.55993 4.58055 4.63610 4.74551 4.77690 4.81334 4.84903 4.91128 4.95013 4.99152 5.02156 5.09749 5.12231 5.14174 5.22841 5.30148 5.32314 5.42380 5.50531 5.55081 5.76860 6.00621 6.19871 6.20969 6.77787 6.88966 7.42451 7.54096 8.26545 9.00550 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.003304 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.103846 B = 8473.746646 C = 9488.845213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.083 3.917 3 C -0.099 4.099 4 C -0.068 4.068 5 C 0.001 3.999 6 C 0.570 3.430 7 O -0.559 6.559 8 N -0.585 5.585 9 C 0.086 3.914 10 C -0.124 4.124 11 C -0.138 4.138 12 C -0.084 4.084 13 H 0.055 0.945 14 C 0.141 3.859 15 H 0.020 0.980 16 C -0.123 4.123 17 C -0.123 4.123 18 C 0.122 3.878 19 N -0.620 5.620 20 C -0.233 4.233 21 H 0.038 0.962 22 C 0.008 3.992 23 N -0.947 5.947 24 Si 0.940 3.060 25 H -0.255 1.255 26 H -0.268 1.268 27 H -0.317 1.317 28 C 0.117 3.883 29 N -0.222 5.222 30 N -0.279 5.279 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.207 0.793 35 H 0.175 0.825 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.029 0.971 48 H 0.263 0.737 49 H 0.068 0.932 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.552 18.117 9.445 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.096 4.096 5 C -0.145 4.145 6 C 0.356 3.644 7 O -0.437 6.437 8 N -0.315 5.315 9 C -0.036 4.036 10 C -0.162 4.162 11 C -0.175 4.175 12 C -0.105 4.105 13 H 0.074 0.926 14 C 0.035 3.965 15 H 0.037 0.963 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.003 4.003 19 N -0.346 5.346 20 C -0.362 4.362 21 H 0.056 0.944 22 C -0.189 4.189 23 N -0.591 5.591 24 Si 0.770 3.230 25 H -0.181 1.181 26 H -0.194 1.194 27 H -0.247 1.247 28 C -0.005 4.005 29 N -0.067 5.067 30 N -0.122 5.122 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.224 0.776 35 H 0.193 0.807 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.286 16.748 9.486 25.213 hybrid contribution 0.620 0.252 0.347 0.754 sum -15.666 17.000 9.834 25.122 Atomic orbital electron populations 1.20930 0.84110 1.05748 1.05205 1.23784 1.01189 0.90012 0.91024 1.22852 0.92950 1.01650 0.95288 1.22665 0.96489 0.98103 0.92344 1.22706 0.95085 0.93658 1.03010 1.17958 0.86381 0.82902 0.77150 1.90735 1.64418 1.36390 1.52198 1.48075 1.08619 1.09545 1.65244 1.22889 0.97955 0.86626 0.96181 1.21861 0.96245 1.00656 0.97473 1.22052 0.94974 0.97043 1.03467 1.21679 0.95834 0.96629 0.96311 0.92644 1.21401 0.91519 0.94819 0.88759 0.96309 1.22655 0.96341 0.96347 1.00750 1.22678 0.96505 1.01295 0.95680 1.21844 0.90549 0.91690 0.96189 1.44753 1.38573 1.26397 1.24883 1.18086 1.41954 0.85212 0.90961 0.94443 1.25963 0.97557 0.94312 1.01113 1.69868 1.49658 1.02046 1.37513 0.86184 0.79600 0.74179 0.83004 1.18120 1.19393 1.24651 1.21809 0.78957 1.02213 0.97559 1.73056 1.00280 1.25498 1.07915 1.73083 1.00763 1.26993 1.11387 0.87937 0.86824 0.90123 0.77618 0.80738 0.83972 0.91473 0.92918 0.90723 0.89589 0.94024 0.90117 0.89629 0.88208 0.91951 0.94192 0.95284 0.92761 0.91362 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.19 71.24 0.73 0.13 16 2 C 0.08 1.19 6.87 42.59 0.29 1.49 16 3 C -0.10 -1.06 9.86 22.49 0.22 -0.84 16 4 C -0.07 -1.20 9.73 22.77 0.22 -0.98 16 5 C 0.00 0.03 6.65 41.99 0.28 0.31 16 6 C 0.57 18.05 7.66 86.88 0.67 18.71 16 7 O -0.56 -19.36 15.86 -3.74 -0.06 -19.41 16 8 N -0.59 -19.44 2.97 -821.95 -2.44 -21.88 16 9 C 0.09 2.79 5.89 86.36 0.51 3.30 16 10 C -0.12 -4.56 6.08 30.67 0.19 -4.38 16 11 C -0.14 -6.03 3.69 30.62 0.11 -5.92 16 12 C -0.08 -3.33 1.97 -10.71 -0.02 -3.35 16 13 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.14 5.84 1.98 45.34 0.09 5.93 16 15 H 0.02 0.87 3.33 -2.39 -0.01 0.86 16 16 C -0.12 -3.98 5.43 31.79 0.17 -3.81 16 17 C -0.12 -3.88 7.07 31.91 0.23 -3.65 16 18 C 0.12 4.85 7.22 86.78 0.63 5.47 16 19 N -0.62 -29.58 2.62 -668.69 -1.75 -31.33 16 20 C -0.23 -13.17 8.30 84.03 0.70 -12.47 16 21 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 22 C 0.01 0.47 3.93 84.86 0.33 0.81 16 23 N -0.95 -58.18 13.97 21.65 0.30 -57.88 16 24 Si 0.94 46.94 23.05 68.60 1.58 48.52 16 25 H -0.26 -11.93 5.37 99.48 0.53 -11.39 16 26 H -0.27 -13.07 6.92 99.48 0.69 -12.39 16 27 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 28 C 0.12 4.04 5.29 86.37 0.46 4.49 16 29 N -0.22 -6.02 7.36 -48.49 -0.36 -6.38 16 30 N -0.28 -6.48 11.43 -47.53 -0.54 -7.02 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 -0.01 8.09 -2.39 -0.02 -0.03 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.21 0.13 8.06 -2.91 -0.02 0.11 16 35 H 0.18 2.60 7.75 -2.91 -0.02 2.57 16 36 H 0.14 4.39 4.05 -99.59 -0.40 3.99 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.09 4.52 4.40 -2.39 -0.01 4.51 16 41 H 0.04 1.89 5.38 -2.39 -0.01 1.88 16 42 H 0.08 2.45 7.28 -2.39 -0.02 2.43 16 43 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 48 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.10 3.25 5.84 -2.39 -0.01 3.23 16 Total: -1.00 -73.97 372.70 2.90 -71.07 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.37 Total: 19.07 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.80 Total: 5.24 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -4.79 Total: -124.49 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.58 Total: 48.52 kcal Total: -73.97 2.90 -71.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963300843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.411 kcal (2) G-P(sol) polarization free energy of solvation -73.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds