Wall clock time and date at job start Wed Apr 1 2020 03:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31917 * 120.16928 * 2 1 4 4 N 1.28284 * 122.32120 * 179.72602 * 3 2 1 5 5 C 1.31914 * 122.51716 * 359.97438 * 4 3 2 6 6 C 1.38502 * 119.96752 * 0.02562 * 5 4 3 7 7 C 1.39725 * 120.17096 * 179.72283 * 2 1 3 8 8 C 1.48136 * 121.14337 * 0.25338 * 7 2 1 9 9 O 1.21517 * 120.00197 * 304.64154 * 8 7 2 10 10 N 1.34785 * 120.00081 * 124.64415 * 8 7 2 11 11 C 1.46923 * 120.62629 * 3.94453 * 10 8 7 12 12 C 1.52757 * 109.00559 * 233.58327 * 11 10 8 13 13 C 1.53047 * 109.38443 * 305.58646 * 12 11 10 14 14 C 1.53035 * 109.53249 * 61.24174 * 13 12 11 15 15 H 1.08996 * 109.50145 * 58.59095 * 14 13 12 16 16 C 1.53002 * 109.49487 * 178.68552 * 14 13 12 17 17 H 1.09000 * 109.87429 * 305.32107 * 16 14 13 18 18 C 1.54328 * 109.88342 * 184.14195 * 16 14 13 19 19 C 1.55155 * 102.94208 * 218.38825 * 18 16 14 20 20 C 1.54907 * 101.58163 * 35.50525 * 19 18 16 21 21 N 1.47025 * 109.88542 * 66.33765 * 16 14 13 22 22 C 1.36943 * 125.64376 * 298.32412 * 21 16 14 23 23 H 1.07993 * 120.00136 * 138.19064 * 22 21 16 24 24 C 1.38813 * 119.99930 * 318.19387 * 22 21 16 25 25 N 1.31618 * 119.99815 * 163.93471 * 24 22 21 26 26 Si 1.86804 * 120.00153 * 343.93258 * 24 22 21 27 27 H 1.48496 * 109.46870 * 93.63655 * 26 24 22 28 28 H 1.48490 * 109.47259 * 213.64132 * 26 24 22 29 29 H 1.48502 * 109.46960 * 333.64277 * 26 24 22 30 30 C 1.46916 * 120.63144 * 184.21968 * 10 8 7 31 31 H 1.09002 * 109.47251 * 95.36044 * 1 2 3 32 32 H 1.09002 * 109.47365 * 215.36384 * 1 2 3 33 33 H 1.09001 * 109.47162 * 335.36184 * 1 2 3 34 34 H 1.08000 * 120.01669 * 180.02562 * 5 4 3 35 35 H 1.08008 * 121.08546 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.58678 * 353.41679 * 11 10 8 37 37 H 1.08997 * 109.58901 * 113.84341 * 11 10 8 38 38 H 1.09004 * 109.56512 * 185.55258 * 12 11 10 39 39 H 1.08995 * 109.36550 * 65.50166 * 12 11 10 40 40 H 1.09004 * 109.45860 * 301.22662 * 13 12 11 41 41 H 1.08998 * 109.45949 * 181.26158 * 13 12 11 42 42 H 1.08997 * 110.72155 * 336.75341 * 18 16 14 43 43 H 1.09002 * 110.71954 * 100.02657 * 18 16 14 44 44 H 1.09000 * 111.00883 * 277.42788 * 19 18 16 45 45 H 1.09000 * 111.00239 * 153.57492 * 19 18 16 46 46 H 1.09005 * 110.36809 * 204.15140 * 20 19 18 47 47 H 1.08999 * 110.46461 * 81.87697 * 20 19 18 48 48 H 0.97009 * 119.99576 * 179.97438 * 25 24 22 49 49 H 1.09003 * 109.58720 * 246.15717 * 30 10 8 50 50 H 1.09006 * 109.59018 * 6.43888 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1887 0.0052 5 6 4.2023 0.1037 0.0114 6 6 3.6090 -1.1478 0.0120 7 6 2.2093 -1.2079 0.0058 8 6 1.4982 -2.5075 0.0065 9 8 0.6785 -2.7512 0.8698 10 7 1.7605 -3.4197 -0.9504 11 6 2.8096 -3.1757 -1.9497 12 6 2.2152 -3.3459 -3.3466 13 6 1.5532 -4.7217 -3.4528 14 6 0.4210 -4.8252 -2.4284 15 1 -0.3072 -4.0348 -2.6098 16 6 -0.2614 -6.1885 -2.5575 17 1 -0.5894 -6.3428 -3.5855 18 6 -1.4699 -6.2633 -1.6006 19 6 -1.4127 -7.7246 -1.0822 20 6 0.1153 -7.9661 -1.0008 21 7 0.6724 -7.2543 -2.1653 22 6 1.8623 -7.5390 -2.7805 23 1 2.7343 -7.7725 -2.1877 24 6 1.9476 -7.5275 -4.1659 25 7 3.1251 -7.4844 -4.7524 26 14 0.3912 -7.5731 -5.1980 27 1 -0.0189 -6.1867 -5.5367 28 1 0.6481 -8.3327 -6.4478 29 1 -0.6929 -8.2362 -4.4297 30 6 0.9988 -4.6742 -1.0176 31 1 -0.3634 -0.0960 -1.0232 32 1 -0.3634 -0.8381 0.5948 33 1 -0.3633 0.9341 0.4284 34 1 5.2787 0.1913 0.0160 35 1 4.2059 -2.0479 0.0166 36 1 3.1919 -2.1611 -1.8379 37 1 3.6200 -3.8912 -1.8109 38 1 3.0061 -3.2642 -4.0922 39 1 1.4702 -2.5694 -3.5194 40 1 2.2935 -5.4971 -3.2555 41 1 1.1482 -4.8533 -4.4562 42 1 -1.3548 -5.5575 -0.7781 43 1 -2.4000 -6.0813 -2.1391 44 1 -1.8793 -8.4091 -1.7906 45 1 -1.8744 -7.8084 -0.0984 46 1 0.3350 -9.0317 -1.0669 47 1 0.5176 -7.5533 -0.0757 48 1 3.1847 -7.4767 -5.7206 49 1 1.6587 -5.5144 -0.8012 50 1 0.1883 -4.6492 -0.2892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963327947.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:26 Heat of formation + Delta-G solvation = 55.367739 kcal Electronic energy + Delta-G solvation = -32342.152868 eV Core-core repulsion = 28370.737153 eV Total energy + Delta-G solvation = -3971.415714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55995 -39.98387 -38.52613 -36.56544 -34.06137 -33.76029 -32.99005 -32.23863 -31.09439 -30.03827 -28.63083 -27.30800 -26.26064 -24.69184 -24.25860 -23.34790 -22.70276 -20.96158 -20.24368 -19.87711 -19.01755 -18.06022 -17.37447 -16.72433 -16.43484 -16.09795 -15.68213 -15.32545 -14.98348 -14.80340 -14.59817 -14.04956 -13.87894 -13.60111 -13.53244 -13.29583 -13.23969 -13.10478 -12.79716 -12.68185 -12.42139 -12.12216 -11.99455 -11.66580 -11.51290 -11.25253 -11.19782 -10.92850 -10.78508 -10.56324 -10.53402 -10.44785 -10.35761 -10.21456 -10.14287 -9.92690 -9.82561 -9.68320 -9.52382 -9.41342 -8.58146 -8.31363 -6.79121 -6.14730 -3.59639 0.25355 0.61093 2.46316 2.91836 3.22132 3.28592 3.37700 3.43631 3.76048 4.09587 4.13712 4.29818 4.40234 4.58495 4.89467 4.95210 4.95624 5.11674 5.21969 5.25330 5.27540 5.32107 5.36650 5.40714 5.51331 5.54495 5.62405 5.64647 5.70306 5.79131 5.81953 5.91592 6.02196 6.06616 6.12083 6.15895 6.20868 6.26910 6.33766 6.39155 6.51771 6.61995 6.65908 6.75031 6.82237 6.83785 6.93120 7.41828 7.53459 7.90645 8.02444 8.22810 8.43086 8.76040 9.52721 10.18294 10.99544 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003802 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.336582 B = 7362.247054 C = 8197.012041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.113 3.887 3 N -0.244 5.244 4 N -0.231 5.231 5 C 0.031 3.969 6 C -0.086 4.086 7 C -0.116 4.116 8 C 0.560 3.440 9 O -0.531 6.531 10 N -0.588 5.588 11 C 0.102 3.898 12 C -0.131 4.131 13 C -0.136 4.136 14 C -0.097 4.097 15 H 0.051 0.949 16 C 0.154 3.846 17 H 0.037 0.963 18 C -0.133 4.133 19 C -0.136 4.136 20 C 0.127 3.873 21 N -0.601 5.601 22 C -0.250 4.250 23 H 0.081 0.919 24 C 0.051 3.949 25 N -0.898 5.898 26 Si 0.877 3.123 27 H -0.282 1.282 28 H -0.303 1.303 29 H -0.269 1.269 30 C 0.127 3.873 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.179 0.821 35 H 0.158 0.842 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.134 0.866 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.026 0.974 48 H 0.265 0.735 49 H 0.092 0.908 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 10.155 6.659 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 N -0.087 5.087 4 N -0.073 5.073 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.345 3.655 9 O -0.409 6.409 10 N -0.319 5.319 11 C -0.021 4.021 12 C -0.169 4.169 13 C -0.173 4.173 14 C -0.118 4.118 15 H 0.069 0.931 16 C 0.048 3.952 17 H 0.054 0.946 18 C -0.171 4.171 19 C -0.174 4.174 20 C 0.002 3.998 21 N -0.328 5.328 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.151 4.151 25 N -0.538 5.538 26 Si 0.708 3.292 27 H -0.209 1.209 28 H -0.231 1.231 29 H -0.195 1.195 30 C 0.006 3.994 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.196 0.804 35 H 0.176 0.824 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.151 0.849 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.110 0.890 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.028 11.624 6.907 13.673 hybrid contribution -0.587 -1.548 -1.029 1.950 sum -2.616 10.076 5.879 11.955 Atomic orbital electron populations 1.20921 0.86885 1.05396 1.04167 1.22977 0.99338 0.88617 0.92169 1.73040 1.01602 1.23914 1.10147 1.72856 0.99569 1.27798 1.07032 1.24279 1.02743 0.89168 0.97058 1.22697 0.93856 1.00674 0.94288 1.21135 0.94946 0.95933 1.01063 1.17918 0.82471 0.82732 0.82347 1.90769 1.34824 1.78426 1.36843 1.48200 1.36294 1.19098 1.28314 1.21907 0.90273 1.01134 0.88745 1.21840 1.00366 0.99508 0.95192 1.22159 1.00041 0.97138 0.97955 1.21752 0.97480 0.97855 0.94670 0.93083 1.21191 0.89692 0.88075 0.96280 0.94560 1.22673 0.97741 0.97362 0.99281 1.22755 0.98271 0.96356 1.00059 1.21783 0.90483 0.96351 0.91213 1.44679 1.21383 1.31895 1.34818 1.18361 0.85520 1.45035 0.88826 0.90171 1.25495 0.95725 0.97045 0.96806 1.69792 1.22802 1.51270 1.09981 0.86990 0.85326 0.77558 0.79363 1.20908 1.23123 1.19466 1.21830 0.96177 0.83619 0.97751 0.89687 0.88260 0.89587 0.80398 0.82413 0.90982 0.90058 0.90924 0.93174 0.84864 0.92864 0.91108 0.92099 0.91875 0.91906 0.93416 0.95610 0.92500 0.88968 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.73 36.01 0.35 -0.96 16 2 C 0.11 1.49 6.91 -82.00 -0.57 0.92 16 3 N -0.24 -3.38 11.42 33.81 0.39 -3.00 16 4 N -0.23 -2.98 11.48 30.53 0.35 -2.63 16 5 C 0.03 0.31 11.30 -17.42 -0.20 0.11 16 6 C -0.09 -0.88 7.70 -38.79 -0.30 -1.18 16 7 C -0.12 -1.49 4.85 -104.58 -0.51 -2.00 16 8 C 0.56 8.37 6.68 -12.19 -0.08 8.29 16 9 O -0.53 -9.25 14.75 5.35 0.08 -9.17 16 10 N -0.59 -8.83 2.98 -174.04 -0.52 -9.35 16 11 C 0.10 1.38 5.65 -3.94 -0.02 1.36 16 12 C -0.13 -2.01 6.06 -26.83 -0.16 -2.17 16 13 C -0.14 -2.59 3.64 -26.69 -0.10 -2.69 16 14 C -0.10 -1.73 2.14 -90.50 -0.19 -1.92 16 15 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.15 2.98 2.12 -66.95 -0.14 2.84 16 17 H 0.04 0.80 3.86 -51.93 -0.20 0.60 16 18 C -0.13 -2.15 6.30 -24.90 -0.16 -2.30 16 19 C -0.14 -2.16 7.08 -24.58 -0.17 -2.33 16 20 C 0.13 2.32 7.23 -2.53 -0.02 2.31 16 21 N -0.60 -12.73 1.49 -162.57 -0.24 -12.97 16 22 C -0.25 -6.12 8.17 -15.06 -0.12 -6.24 16 23 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 24 C 0.05 1.30 3.49 -17.43 -0.06 1.24 16 25 N -0.90 -24.24 13.95 55.49 0.77 -23.47 16 26 Si 0.88 20.92 23.41 -169.99 -3.98 16.94 16 27 H -0.28 -6.56 6.26 56.52 0.35 -6.20 16 28 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.27 -6.46 7.07 56.52 0.40 -6.06 16 30 C 0.13 2.14 5.27 -3.71 -0.02 2.12 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.24 6.09 -51.93 -0.32 0.93 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.27 7.58 -52.48 -0.40 0.87 16 36 H 0.07 0.82 4.82 -51.93 -0.25 0.57 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.13 2.96 4.56 -51.93 -0.24 2.73 16 41 H 0.05 1.12 6.12 -51.93 -0.32 0.80 16 42 H 0.07 1.08 6.11 -51.93 -0.32 0.77 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.09 1.74 7.19 -51.93 -0.37 1.37 16 50 H 0.08 1.43 5.40 -51.93 -0.28 1.15 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -28.87 369.98 -7.42 -36.29 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.37 Total: 4.38 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.47 Total: -2.60 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.75 Total: -51.42 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -3.98 Total: 16.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.87 -7.42 -36.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963327947.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.658 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds