Wall clock time and date at job start Wed Apr 1 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31917 * 120.16928 * 2 1 4 4 N 1.28284 * 122.32120 * 179.72602 * 3 2 1 5 5 C 1.31914 * 122.51716 * 359.97438 * 4 3 2 6 6 C 1.38502 * 119.96752 * 0.02562 * 5 4 3 7 7 C 1.39725 * 120.17096 * 179.72283 * 2 1 3 8 8 C 1.48136 * 121.14337 * 0.25338 * 7 2 1 9 9 O 1.21517 * 120.00197 * 304.64154 * 8 7 2 10 10 N 1.34785 * 120.00081 * 124.64415 * 8 7 2 11 11 C 1.46923 * 120.62629 * 3.94453 * 10 8 7 12 12 C 1.52757 * 109.00559 * 233.58327 * 11 10 8 13 13 C 1.53047 * 109.38443 * 305.58646 * 12 11 10 14 14 C 1.53035 * 109.53249 * 61.24174 * 13 12 11 15 15 H 1.08996 * 109.50145 * 58.59095 * 14 13 12 16 16 C 1.53002 * 109.49487 * 178.68552 * 14 13 12 17 17 H 1.09000 * 109.87429 * 305.32107 * 16 14 13 18 18 C 1.54328 * 109.88342 * 184.14195 * 16 14 13 19 19 C 1.55155 * 102.94208 * 218.38825 * 18 16 14 20 20 C 1.54907 * 101.58163 * 35.50525 * 19 18 16 21 21 N 1.47025 * 109.88542 * 66.33765 * 16 14 13 22 22 C 1.36943 * 125.64376 * 298.32412 * 21 16 14 23 23 H 1.07993 * 120.00136 * 138.19064 * 22 21 16 24 24 C 1.38813 * 119.99930 * 318.19387 * 22 21 16 25 25 N 1.31618 * 119.99815 * 163.93471 * 24 22 21 26 26 Si 1.86804 * 120.00153 * 343.93258 * 24 22 21 27 27 H 1.48496 * 109.46870 * 93.63655 * 26 24 22 28 28 H 1.48490 * 109.47259 * 213.64132 * 26 24 22 29 29 H 1.48502 * 109.46960 * 333.64277 * 26 24 22 30 30 C 1.46916 * 120.63144 * 184.21968 * 10 8 7 31 31 H 1.09002 * 109.47251 * 95.36044 * 1 2 3 32 32 H 1.09002 * 109.47365 * 215.36384 * 1 2 3 33 33 H 1.09001 * 109.47162 * 335.36184 * 1 2 3 34 34 H 1.08000 * 120.01669 * 180.02562 * 5 4 3 35 35 H 1.08008 * 121.08546 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.58678 * 353.41679 * 11 10 8 37 37 H 1.08997 * 109.58901 * 113.84341 * 11 10 8 38 38 H 1.09004 * 109.56512 * 185.55258 * 12 11 10 39 39 H 1.08995 * 109.36550 * 65.50166 * 12 11 10 40 40 H 1.09004 * 109.45860 * 301.22662 * 13 12 11 41 41 H 1.08998 * 109.45949 * 181.26158 * 13 12 11 42 42 H 1.08997 * 110.72155 * 336.75341 * 18 16 14 43 43 H 1.09002 * 110.71954 * 100.02657 * 18 16 14 44 44 H 1.09000 * 111.00883 * 277.42788 * 19 18 16 45 45 H 1.09000 * 111.00239 * 153.57492 * 19 18 16 46 46 H 1.09005 * 110.36809 * 204.15140 * 20 19 18 47 47 H 1.08999 * 110.46461 * 81.87697 * 20 19 18 48 48 H 0.97009 * 119.99576 * 179.97438 * 25 24 22 49 49 H 1.09003 * 109.58720 * 246.15717 * 30 10 8 50 50 H 1.09006 * 109.59018 * 6.43888 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1887 0.0052 5 6 4.2023 0.1037 0.0114 6 6 3.6090 -1.1478 0.0120 7 6 2.2093 -1.2079 0.0058 8 6 1.4982 -2.5075 0.0065 9 8 0.6785 -2.7512 0.8698 10 7 1.7605 -3.4197 -0.9504 11 6 2.8096 -3.1757 -1.9497 12 6 2.2152 -3.3459 -3.3466 13 6 1.5532 -4.7217 -3.4528 14 6 0.4210 -4.8252 -2.4284 15 1 -0.3072 -4.0348 -2.6098 16 6 -0.2614 -6.1885 -2.5575 17 1 -0.5894 -6.3428 -3.5855 18 6 -1.4699 -6.2633 -1.6006 19 6 -1.4127 -7.7246 -1.0822 20 6 0.1153 -7.9661 -1.0008 21 7 0.6724 -7.2543 -2.1653 22 6 1.8623 -7.5390 -2.7805 23 1 2.7343 -7.7725 -2.1877 24 6 1.9476 -7.5275 -4.1659 25 7 3.1251 -7.4844 -4.7524 26 14 0.3912 -7.5731 -5.1980 27 1 -0.0189 -6.1867 -5.5367 28 1 0.6481 -8.3327 -6.4478 29 1 -0.6929 -8.2362 -4.4297 30 6 0.9988 -4.6742 -1.0176 31 1 -0.3634 -0.0960 -1.0232 32 1 -0.3634 -0.8381 0.5948 33 1 -0.3633 0.9341 0.4284 34 1 5.2787 0.1913 0.0160 35 1 4.2059 -2.0479 0.0166 36 1 3.1919 -2.1611 -1.8379 37 1 3.6200 -3.8912 -1.8109 38 1 3.0061 -3.2642 -4.0922 39 1 1.4702 -2.5694 -3.5194 40 1 2.2935 -5.4971 -3.2555 41 1 1.1482 -4.8533 -4.4562 42 1 -1.3548 -5.5575 -0.7781 43 1 -2.4000 -6.0813 -2.1391 44 1 -1.8793 -8.4091 -1.7906 45 1 -1.8744 -7.8084 -0.0984 46 1 0.3350 -9.0317 -1.0669 47 1 0.5176 -7.5533 -0.0757 48 1 3.1847 -7.4767 -5.7206 49 1 1.6587 -5.5144 -0.8012 50 1 0.1883 -4.6492 -0.2892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963327947.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:24 Heat of formation + Delta-G solvation = 38.278570 kcal Electronic energy + Delta-G solvation = -32342.893909 eV Core-core repulsion = 28370.737153 eV Total energy + Delta-G solvation = -3972.156756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.53353 -41.22050 -39.90927 -37.88177 -35.04864 -34.85944 -34.62507 -33.57709 -32.40683 -31.73244 -29.56735 -28.64186 -27.40169 -26.31797 -25.52161 -24.38123 -23.91016 -22.30741 -21.63191 -21.35176 -20.39706 -19.04809 -18.59283 -18.31729 -17.69320 -17.40435 -16.86557 -16.51772 -16.21766 -15.95171 -15.70559 -15.40956 -15.30880 -15.10106 -14.99162 -14.59732 -14.45266 -14.21038 -14.00108 -13.92675 -13.60502 -13.55024 -13.30276 -13.18204 -12.93883 -12.88861 -12.49645 -12.23115 -12.16618 -12.09712 -11.90587 -11.84454 -11.74663 -11.61625 -11.48075 -11.24752 -11.07227 -10.91100 -10.82829 -10.62059 -10.34950 -9.74058 -8.56323 -8.15266 -5.54396 -0.67310 -0.23380 1.29161 1.32294 1.40435 1.48587 1.76191 2.37994 2.43626 2.90031 3.06015 3.12893 3.25247 3.42727 3.50220 3.70939 3.77891 3.86312 4.02585 4.05044 4.12188 4.17978 4.18958 4.23451 4.37721 4.39991 4.43612 4.47536 4.55849 4.62225 4.66448 4.72855 4.81287 4.86613 4.88726 4.98826 5.00025 5.03335 5.06205 5.15471 5.16980 5.17576 5.23476 5.27759 5.39171 5.46756 5.51397 5.86505 6.06309 6.23467 6.25814 6.84233 6.93268 7.54105 7.60638 8.32104 9.03134 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003802 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.336582 B = 7362.247054 C = 8197.012041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.106 3.894 3 N -0.267 5.267 4 N -0.255 5.255 5 C 0.044 3.956 6 C -0.073 4.073 7 C -0.133 4.133 8 C 0.567 3.433 9 O -0.557 6.557 10 N -0.589 5.589 11 C 0.107 3.893 12 C -0.127 4.127 13 C -0.132 4.132 14 C -0.092 4.092 15 H 0.062 0.938 16 C 0.145 3.855 17 H 0.014 0.986 18 C -0.126 4.126 19 C -0.125 4.125 20 C 0.121 3.879 21 N -0.613 5.613 22 C -0.226 4.226 23 H 0.049 0.951 24 C 0.021 3.979 25 N -0.934 5.934 26 Si 0.918 3.082 27 H -0.276 1.276 28 H -0.317 1.317 29 H -0.269 1.269 30 C 0.142 3.858 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.221 0.779 35 H 0.184 0.816 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.027 0.973 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.261 0.739 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 11.636 7.846 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.039 4.039 3 N -0.109 5.109 4 N -0.095 5.095 5 C -0.120 4.120 6 C -0.103 4.103 7 C -0.148 4.148 8 C 0.354 3.646 9 O -0.437 6.437 10 N -0.320 5.320 11 C -0.015 4.015 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.113 4.113 15 H 0.081 0.919 16 C 0.039 3.961 17 H 0.032 0.968 18 C -0.164 4.164 19 C -0.164 4.164 20 C -0.004 4.004 21 N -0.339 5.339 22 C -0.355 4.355 23 H 0.066 0.934 24 C -0.178 4.178 25 N -0.577 5.577 26 Si 0.750 3.250 27 H -0.203 1.203 28 H -0.246 1.246 29 H -0.194 1.194 30 C 0.020 3.980 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.238 0.762 35 H 0.201 0.799 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.046 0.954 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.517 13.131 8.114 15.639 hybrid contribution -0.362 -2.015 -1.310 2.431 sum -2.879 11.115 6.804 13.347 Atomic orbital electron populations 1.20908 0.86285 1.05388 1.04497 1.23143 0.99954 0.88585 0.92241 1.73015 1.02336 1.24293 1.11240 1.72781 0.99496 1.29430 1.07832 1.24903 1.04368 0.87949 0.94767 1.23052 0.92863 1.02032 0.92344 1.21003 0.96094 0.94553 1.03116 1.18128 0.81934 0.83091 0.81484 1.90753 1.36047 1.79053 1.37809 1.48171 1.36455 1.18574 1.28779 1.21943 0.89615 1.02746 0.87175 1.21784 1.00657 0.97344 0.96680 1.21956 0.99661 0.98499 0.96780 1.21676 0.97226 0.97399 0.94955 0.91921 1.21306 0.90683 0.88120 0.95953 0.96825 1.22672 0.96816 0.97883 0.98981 1.22712 0.95982 0.95875 1.01800 1.21907 0.92605 0.95610 0.90240 1.44749 1.20730 1.33256 1.35187 1.18098 0.85982 1.43016 0.88446 0.93377 1.25725 0.96780 0.97841 0.97427 1.69873 1.24126 1.53949 1.09780 0.86332 0.83446 0.77455 0.77814 1.20328 1.24644 1.19448 1.21479 0.95777 0.83912 0.96829 0.88879 0.89548 0.88511 0.76240 0.79874 0.88128 0.90205 0.90317 0.92129 0.88164 0.95443 0.89848 0.90268 0.92334 0.88576 0.94283 0.94709 0.92928 0.91309 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.73 71.24 0.69 -1.72 16 2 C 0.11 2.59 6.91 42.91 0.30 2.89 16 3 N -0.27 -6.94 11.42 -46.95 -0.54 -7.48 16 4 N -0.26 -5.95 11.48 -57.34 -0.66 -6.61 16 5 C 0.04 0.70 11.30 84.74 0.96 1.66 16 6 C -0.07 -1.25 7.70 22.79 0.18 -1.08 16 7 C -0.13 -3.12 4.85 -19.84 -0.10 -3.22 16 8 C 0.57 15.89 6.68 86.87 0.58 16.47 16 9 O -0.56 -18.66 14.75 -3.77 -0.06 -18.72 16 10 N -0.59 -16.70 2.98 -822.82 -2.45 -19.15 16 11 C 0.11 2.69 5.65 86.22 0.49 3.17 16 12 C -0.13 -3.71 6.06 30.53 0.19 -3.53 16 13 C -0.13 -5.03 3.64 30.62 0.11 -4.91 16 14 C -0.09 -3.20 2.14 -10.72 -0.02 -3.22 16 15 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 16 C 0.15 5.50 2.12 45.34 0.10 5.59 16 17 H 0.01 0.61 3.86 -2.39 -0.01 0.60 16 18 C -0.13 -3.74 6.30 31.78 0.20 -3.54 16 19 C -0.13 -3.64 7.08 31.98 0.23 -3.42 16 20 C 0.12 4.30 7.23 86.86 0.63 4.93 16 21 N -0.61 -25.92 1.49 -668.26 -1.00 -26.92 16 22 C -0.23 -11.38 8.17 84.03 0.69 -10.70 16 23 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 24 C 0.02 1.09 3.49 84.86 0.30 1.38 16 25 N -0.93 -52.15 13.95 21.65 0.30 -51.85 16 26 Si 0.92 44.00 23.41 68.60 1.61 45.61 16 27 H -0.28 -12.83 6.26 99.48 0.62 -12.21 16 28 H -0.32 -15.78 7.11 99.48 0.71 -15.08 16 29 H -0.27 -12.72 7.07 99.48 0.70 -12.02 16 30 C 0.14 4.63 5.27 86.37 0.46 5.09 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.09 2.09 6.09 -2.39 -0.01 2.07 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.18 2.16 7.58 -2.91 -0.02 2.14 16 36 H 0.10 1.96 4.82 -2.38 -0.01 1.95 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.21 8.14 -2.38 -0.02 2.20 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 4.56 4.56 -2.38 -0.01 4.55 16 41 H 0.03 1.16 6.12 -2.39 -0.01 1.14 16 42 H 0.08 2.29 6.11 -2.39 -0.01 2.28 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.26 14.20 8.31 -92.70 -0.77 13.42 16 49 H 0.07 2.59 7.19 -2.39 -0.02 2.57 16 50 H 0.08 2.75 5.40 -2.38 -0.01 2.74 16 Total: -1.00 -64.93 369.98 4.04 -60.89 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.87 Total: 18.36 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.96 Total: 5.86 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.34 Total: -112.00 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.61 Total: 45.61 kcal Total: -64.93 4.04 -60.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963327947.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.169 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds