Wall clock time and date at job start Wed Apr 1 2020 02:54:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00358 * 2 1
4 4 H 1.48497 * 109.47393 * 240.00420 * 3 2 1
5 5 H 1.48506 * 109.47057 * 0.02562 * 3 2 1
6 6 H 1.48496 * 109.46937 * 120.00143 * 3 2 1
7 7 C 1.38809 * 119.99601 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00185 * 179.97438 * 7 2 1
9 9 N 1.36930 * 120.00396 * 359.97438 * 7 2 1
10 10 C 1.46506 * 120.00265 * 179.97438 * 9 7 2
11 11 C 1.53948 * 113.57740 * 204.99700 * 10 9 7
12 12 C 1.52909 * 86.78042 * 220.66331 * 11 10 9
13 13 C 1.52904 * 88.04107 * 24.90450 * 12 11 10
14 14 C 1.52920 * 121.13345 * 150.62042 * 12 11 10
15 15 C 1.53947 * 86.77971 * 100.82552 * 14 12 11
16 16 N 1.46503 * 113.57829 * 139.33970 * 15 14 12
17 17 C 1.34781 * 120.00040 * 154.99742 * 16 15 14
18 18 O 1.21630 * 120.00078 * 5.20052 * 17 16 15
19 19 C 1.47157 * 119.99785 * 185.19901 * 17 16 15
20 20 C 1.38408 * 126.88543 * 5.10746 * 19 17 16
21 21 C 1.39675 * 105.35743 * 179.97438 * 20 19 17
22 22 N 1.30862 * 107.86246 * 0.02562 * 21 20 19
23 23 N 1.28436 * 110.92801 * 359.97438 * 22 21 20
24 24 C 1.46505 * 125.19016 * 180.02562 * 23 22 21
25 25 C 1.53781 * 113.61385 * 31.87029 * 24 23 22
26 26 C 1.53772 * 87.08252 * 220.02024 * 25 24 23
27 27 C 1.53780 * 113.61254 * 294.37313 * 24 23 22
28 28 C 1.52909 * 121.14149 * 259.17898 * 12 11 10
29 29 H 0.97005 * 119.99644 * 359.97438 * 1 2 3
30 30 H 0.97004 * 119.99921 * 359.97438 * 9 7 2
31 31 H 1.08993 * 112.87672 * 336.14192 * 10 9 7
32 32 H 1.09001 * 113.66135 * 106.19646 * 11 10 9
33 33 H 1.08994 * 113.75447 * 335.14835 * 11 10 9
34 34 H 1.08997 * 113.66830 * 89.57362 * 13 12 11
35 35 H 1.09005 * 113.65928 * 220.62662 * 13 12 11
36 36 H 1.08998 * 113.66090 * 346.34919 * 14 12 11
37 37 H 1.09002 * 113.65789 * 215.29818 * 14 12 11
38 38 H 1.08999 * 113.57829 * 270.04451 * 15 14 12
39 39 H 0.97003 * 119.99684 * 334.99433 * 16 15 14
40 40 H 1.07998 * 127.32139 * 359.97438 * 20 19 17
41 41 H 1.07997 * 126.06514 * 180.02562 * 21 20 19
42 42 H 1.09003 * 112.84783 * 163.17690 * 24 23 22
43 43 H 1.09000 * 113.61546 * 334.56904 * 25 24 23
44 44 H 1.08998 * 113.61118 * 105.46887 * 25 24 23
45 45 H 1.09007 * 113.61808 * 270.88683 * 26 25 24
46 46 H 1.08995 * 113.62047 * 139.98321 * 26 25 24
47 47 H 1.09001 * 113.61312 * 254.52605 * 27 24 23
48 48 H 1.08998 * 113.61516 * 25.43541 * 27 24 23
49 49 H 1.09001 * 113.66120 * 144.70542 * 28 12 11
50 50 H 1.09002 * 113.66092 * 13.65438 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1040 1.6962 1.2125
7 6 2.0101 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0017
11 6 1.2579 -4.8292 -0.5978
12 6 1.8335 -5.6838 0.5320
13 6 2.0038 -4.4003 1.3453
14 6 1.0605 -6.8783 1.0924
15 6 1.9760 -7.7651 0.2291
16 7 2.4117 -8.9900 0.9044
17 6 2.7659 -10.0697 0.1795
18 8 2.8149 -9.9983 -1.0337
19 6 3.0934 -11.3349 0.8559
20 6 2.9908 -11.6039 2.2097
21 6 3.4124 -12.9273 2.3569
22 7 3.7331 -13.3805 1.1719
23 7 3.5593 -12.4793 0.2735
24 6 3.8207 -12.6523 -1.1576
25 6 3.5801 -14.0860 -1.6588
26 6 4.8419 -13.9127 -2.5204
27 6 5.3063 -12.8691 -1.4906
28 6 3.0116 -6.6276 0.2881
29 1 -0.4850 0.8401 0.0004
30 1 0.3554 -2.3880 0.0002
31 1 3.0649 -3.5644 -0.4086
32 1 1.5958 -5.1300 -1.5895
33 1 0.1774 -4.6978 -0.5400
34 1 1.1333 -4.1468 1.9503
35 1 2.9377 -4.3583 1.9060
36 1 0.0140 -6.9035 0.7888
37 1 1.1957 -7.0228 2.1643
38 1 1.5861 -7.9500 -0.7719
39 1 2.4454 -9.0239 1.8732
40 1 2.6559 -10.9331 2.9871
41 1 3.4645 -13.4786 3.2841
42 1 3.3428 -11.8880 -1.7705
43 1 3.6827 -14.8433 -0.8816
44 1 2.6655 -14.1972 -2.2413
45 1 4.6430 -13.4940 -3.5070
46 1 5.4719 -14.8014 -2.5560
47 1 5.7852 -11.9979 -1.9374
48 1 5.8808 -13.2937 -0.6675
49 1 3.6952 -6.7017 1.1339
50 1 3.5237 -6.4526 -0.6581
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000963808880.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:08
Heat of formation + Delta-G solvation = 118.668085 kcal
Electronic energy + Delta-G solvation = -29232.572093 eV
Core-core repulsion = 25263.901288 eV
Total energy + Delta-G solvation = -3968.670805 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.92010 -40.57217 -39.09314 -38.88156 -35.95441 -33.83458 -32.50345 -32.05094
-30.90198 -29.47391 -26.19164 -25.96496 -25.81823 -25.27276 -24.60087 -23.67655
-22.43734 -21.65616 -20.63518 -20.18817 -19.50632 -18.46173 -17.76957 -16.99633
-16.74125 -16.32314 -16.15349 -15.85291 -15.29823 -14.91299 -14.76690 -14.69367
-14.43678 -14.05520 -13.76633 -13.51753 -13.21125 -13.00963 -12.81642 -12.70173
-12.62046 -12.43711 -12.18204 -11.69567 -11.68675 -11.37802 -11.27165 -11.08575
-11.00570 -10.95840 -10.90848 -10.70547 -10.42754 -10.19215 -10.05456 -9.81542
-9.72911 -9.56310 -9.38077 -9.33409 -9.14101 -8.85255 -6.94812 -5.77501
-3.05908 0.93512 2.03617 2.29059 2.90966 2.94014 3.43750 3.48218
3.49154 3.87370 4.03160 4.23747 4.28647 4.37259 4.51773 4.52268
4.55762 4.65994 4.73793 4.77872 4.85416 5.09337 5.17013 5.26155
5.27478 5.35931 5.37945 5.41503 5.43473 5.44086 5.49907 5.52642
5.68756 5.75840 5.86808 5.89523 5.91275 5.96377 6.03256 6.17348
6.18266 6.21221 6.35809 6.41084 6.43708 6.44304 6.63504 6.91707
7.12571 7.18405 7.69828 7.74317 7.85943 8.41399 9.52299 10.11038
10.45395 11.44885
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.025111 B = 0.001729 C = 0.001675
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.803497 B =16189.732942 C =16717.110115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.014 4.014
3 Si 0.907 3.093
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.243 4.243
8 H 0.070 0.930
9 N -0.713 5.713
10 C 0.168 3.832
11 C -0.129 4.129
12 C -0.102 4.102
13 C -0.148 4.148
14 C -0.129 4.129
15 C 0.125 3.875
16 N -0.701 5.701
17 C 0.591 3.409
18 O -0.541 6.541
19 C -0.039 4.039
20 C -0.191 4.191
21 C -0.006 4.006
22 N -0.276 5.276
23 N -0.243 5.243
24 C 0.110 3.890
25 C -0.139 4.139
26 C -0.137 4.137
27 C -0.142 4.142
28 C -0.124 4.124
29 H 0.256 0.744
30 H 0.385 0.615
31 H 0.074 0.926
32 H 0.061 0.939
33 H 0.082 0.918
34 H 0.079 0.921
35 H 0.054 0.946
36 H 0.075 0.925
37 H 0.084 0.916
38 H 0.116 0.884
39 H 0.403 0.597
40 H 0.160 0.840
41 H 0.186 0.814
42 H 0.152 0.848
43 H 0.100 0.900
44 H 0.078 0.922
45 H 0.089 0.911
46 H 0.080 0.920
47 H 0.080 0.920
48 H 0.091 0.909
49 H 0.084 0.916
50 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.914 -30.317 2.292 31.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.210 4.210
3 Si 0.738 3.262
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.374 4.374
8 H 0.088 0.912
9 N -0.351 5.351
10 C 0.056 3.944
11 C -0.168 4.168
12 C -0.103 4.103
13 C -0.189 4.189
14 C -0.168 4.168
15 C 0.021 3.979
16 N -0.351 5.351
17 C 0.377 3.623
18 O -0.419 6.419
19 C -0.168 4.168
20 C -0.220 4.220
21 C -0.181 4.181
22 N -0.108 5.108
23 N -0.030 5.030
24 C 0.009 3.991
25 C -0.177 4.177
26 C -0.175 4.175
27 C -0.180 4.180
28 C -0.162 4.162
29 H 0.065 0.935
30 H 0.219 0.781
31 H 0.092 0.908
32 H 0.079 0.921
33 H 0.100 0.900
34 H 0.097 0.903
35 H 0.073 0.927
36 H 0.093 0.907
37 H 0.103 0.897
38 H 0.133 0.867
39 H 0.238 0.762
40 H 0.177 0.823
41 H 0.203 0.797
42 H 0.169 0.831
43 H 0.119 0.881
44 H 0.096 0.904
45 H 0.107 0.893
46 H 0.099 0.901
47 H 0.099 0.901
48 H 0.109 0.891
49 H 0.103 0.897
50 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 7.450 -31.026 0.683 31.915
hybrid contribution -0.177 1.609 1.174 1.999
sum 7.273 -29.417 1.857 30.360
Atomic orbital electron populations
1.69651 1.05115 1.25797 1.57566 1.24759 0.95527 0.97751 1.02932
0.86267 0.78531 0.83534 0.77849 1.21257 1.21701 1.21275 1.19264
0.91045 0.84284 1.42824 0.91181 1.42409 1.05727 0.99902 1.87073
1.21535 0.95219 0.84825 0.92780 1.23218 1.00660 0.96715 0.96198
1.22074 0.96209 0.92369 0.99643 1.23641 1.01113 0.94438 0.99752
1.23196 0.99082 0.95057 0.99432 1.22739 0.96486 0.80730 0.97964
1.45775 1.66759 1.12312 1.10222 1.16974 0.76846 0.82109 0.86403
1.90753 1.53314 1.84412 1.13428 1.21499 1.10478 0.91205 0.93568
1.22269 1.07485 0.98177 0.94041 1.23568 1.04096 0.94633 0.95814
1.73088 1.20518 1.18692 0.98517 1.45831 1.43091 1.06214 1.07910
1.23876 0.99133 1.01136 0.74913 1.23313 0.99278 0.95217 0.99885
1.22699 0.97265 0.99638 0.97853 1.23362 0.94632 1.00253 0.99798
1.23144 0.96388 0.94146 1.02535 0.93452 0.78116 0.90804 0.92069
0.89992 0.90254 0.92698 0.90665 0.89707 0.86659 0.76151 0.82257
0.79707 0.83097 0.88124 0.90355 0.89270 0.90140 0.90115 0.89056
0.89738 0.90813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16
4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16
8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
9 N -0.71 -17.73 5.40 -52.48 -0.28 -18.02 16
10 C 0.17 3.27 4.48 -66.95 -0.30 2.97 16
11 C -0.13 -2.06 7.59 -26.28 -0.20 -2.26 16
12 C -0.10 -1.36 1.11 -154.71 -0.17 -1.53 16
13 C -0.15 -2.45 7.64 -26.29 -0.20 -2.65 16
14 C -0.13 -1.40 7.59 -26.28 -0.20 -1.59 16
15 C 0.12 1.35 4.21 -66.95 -0.28 1.07 16
16 N -0.70 -6.60 5.33 -54.01 -0.29 -6.89 16
17 C 0.59 6.77 7.79 -12.64 -0.10 6.67 16
18 O -0.54 -7.66 14.19 5.25 0.07 -7.58 16
19 C -0.04 -0.41 6.96 -82.06 -0.57 -0.98 16
20 C -0.19 -1.55 10.50 -38.98 -0.41 -1.96 16
21 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16
22 N -0.28 -2.83 11.06 30.59 0.34 -2.49 16
23 N -0.24 -2.57 3.48 -49.90 -0.17 -2.75 16
24 C 0.11 1.02 4.36 -67.12 -0.29 0.73 16
25 C -0.14 -1.01 7.69 -25.92 -0.20 -1.21 16
26 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16
27 C -0.14 -1.10 7.88 -25.92 -0.20 -1.31 16
28 C -0.12 -1.46 7.64 -26.29 -0.20 -1.66 16
29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
30 H 0.38 10.14 7.92 -40.82 -0.32 9.81 16
31 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16
32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
33 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16
34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16
35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
37 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16
38 H 0.12 1.42 7.53 -51.93 -0.39 1.03 16
39 H 0.40 2.77 7.80 -40.82 -0.32 2.45 16
40 H 0.16 0.81 7.62 -52.49 -0.40 0.41 16
41 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16
42 H 0.15 1.59 5.86 -51.93 -0.30 1.28 16
43 H 0.10 0.79 7.55 -51.93 -0.39 0.40 16
44 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
50 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16
LS Contribution 406.80 15.07 6.13 6.13
Total: -1.00 -32.52 406.80 -10.51 -43.02
By element:
Atomic # 1 Polarization: 18.97 SS G_CDS: -8.01 Total: 10.96 kcal
Atomic # 6 Polarization: -8.35 SS G_CDS: -3.99 Total: -12.34 kcal
Atomic # 7 Polarization: -57.79 SS G_CDS: 0.32 Total: -57.47 kcal
Atomic # 8 Polarization: -7.66 SS G_CDS: 0.07 Total: -7.58 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -32.52 -10.51 -43.02 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963808880.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 161.691 kcal
(2) G-P(sol) polarization free energy of solvation -32.515 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) 118.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds