Wall clock time and date at job start Wed Apr 1 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00358 * 2 1 4 4 H 1.48497 * 109.47393 * 240.00420 * 3 2 1 5 5 H 1.48506 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46937 * 120.00143 * 3 2 1 7 7 C 1.38809 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00185 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00265 * 179.97438 * 9 7 2 11 11 C 1.53948 * 113.57740 * 204.99700 * 10 9 7 12 12 C 1.52909 * 86.78042 * 220.66331 * 11 10 9 13 13 C 1.52904 * 88.04107 * 24.90450 * 12 11 10 14 14 C 1.52920 * 121.13345 * 150.62042 * 12 11 10 15 15 C 1.53947 * 86.77971 * 100.82552 * 14 12 11 16 16 N 1.46503 * 113.57829 * 139.33970 * 15 14 12 17 17 C 1.34781 * 120.00040 * 154.99742 * 16 15 14 18 18 O 1.21630 * 120.00078 * 5.20052 * 17 16 15 19 19 C 1.47157 * 119.99785 * 185.19901 * 17 16 15 20 20 C 1.38408 * 126.88543 * 5.10746 * 19 17 16 21 21 C 1.39675 * 105.35743 * 179.97438 * 20 19 17 22 22 N 1.30862 * 107.86246 * 0.02562 * 21 20 19 23 23 N 1.28436 * 110.92801 * 359.97438 * 22 21 20 24 24 C 1.46505 * 125.19016 * 180.02562 * 23 22 21 25 25 C 1.53781 * 113.61385 * 31.87029 * 24 23 22 26 26 C 1.53772 * 87.08252 * 220.02024 * 25 24 23 27 27 C 1.53780 * 113.61254 * 294.37313 * 24 23 22 28 28 C 1.52909 * 121.14149 * 259.17898 * 12 11 10 29 29 H 0.97005 * 119.99644 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99921 * 359.97438 * 9 7 2 31 31 H 1.08993 * 112.87672 * 336.14192 * 10 9 7 32 32 H 1.09001 * 113.66135 * 106.19646 * 11 10 9 33 33 H 1.08994 * 113.75447 * 335.14835 * 11 10 9 34 34 H 1.08997 * 113.66830 * 89.57362 * 13 12 11 35 35 H 1.09005 * 113.65928 * 220.62662 * 13 12 11 36 36 H 1.08998 * 113.66090 * 346.34919 * 14 12 11 37 37 H 1.09002 * 113.65789 * 215.29818 * 14 12 11 38 38 H 1.08999 * 113.57829 * 270.04451 * 15 14 12 39 39 H 0.97003 * 119.99684 * 334.99433 * 16 15 14 40 40 H 1.07998 * 127.32139 * 359.97438 * 20 19 17 41 41 H 1.07997 * 126.06514 * 180.02562 * 21 20 19 42 42 H 1.09003 * 112.84783 * 163.17690 * 24 23 22 43 43 H 1.09000 * 113.61546 * 334.56904 * 25 24 23 44 44 H 1.08998 * 113.61118 * 105.46887 * 25 24 23 45 45 H 1.09007 * 113.61808 * 270.88683 * 26 25 24 46 46 H 1.08995 * 113.62047 * 139.98321 * 26 25 24 47 47 H 1.09001 * 113.61312 * 254.52605 * 27 24 23 48 48 H 1.08998 * 113.61516 * 25.43541 * 27 24 23 49 49 H 1.09001 * 113.66120 * 144.70542 * 28 12 11 50 50 H 1.09002 * 113.66092 * 13.65438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.2579 -4.8292 -0.5978 12 6 1.8335 -5.6838 0.5320 13 6 2.0038 -4.4003 1.3453 14 6 1.0605 -6.8783 1.0924 15 6 1.9760 -7.7651 0.2291 16 7 2.4117 -8.9900 0.9044 17 6 2.7659 -10.0697 0.1795 18 8 2.8149 -9.9983 -1.0337 19 6 3.0934 -11.3349 0.8559 20 6 2.9908 -11.6039 2.2097 21 6 3.4124 -12.9273 2.3569 22 7 3.7331 -13.3805 1.1719 23 7 3.5593 -12.4793 0.2735 24 6 3.8207 -12.6523 -1.1576 25 6 3.5801 -14.0860 -1.6588 26 6 4.8419 -13.9127 -2.5204 27 6 5.3063 -12.8691 -1.4906 28 6 3.0116 -6.6276 0.2881 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0002 31 1 3.0649 -3.5644 -0.4086 32 1 1.5958 -5.1300 -1.5895 33 1 0.1774 -4.6978 -0.5400 34 1 1.1333 -4.1468 1.9503 35 1 2.9377 -4.3583 1.9060 36 1 0.0140 -6.9035 0.7888 37 1 1.1957 -7.0228 2.1643 38 1 1.5861 -7.9500 -0.7719 39 1 2.4454 -9.0239 1.8732 40 1 2.6559 -10.9331 2.9871 41 1 3.4645 -13.4786 3.2841 42 1 3.3428 -11.8880 -1.7705 43 1 3.6827 -14.8433 -0.8816 44 1 2.6655 -14.1972 -2.2413 45 1 4.6430 -13.4940 -3.5070 46 1 5.4719 -14.8014 -2.5560 47 1 5.7852 -11.9979 -1.9374 48 1 5.8808 -13.2937 -0.6675 49 1 3.6952 -6.7017 1.1339 50 1 3.5237 -6.4526 -0.6581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963808880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:08 Heat of formation + Delta-G solvation = 118.668085 kcal Electronic energy + Delta-G solvation = -29232.572093 eV Core-core repulsion = 25263.901288 eV Total energy + Delta-G solvation = -3968.670805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.92010 -40.57217 -39.09314 -38.88156 -35.95441 -33.83458 -32.50345 -32.05094 -30.90198 -29.47391 -26.19164 -25.96496 -25.81823 -25.27276 -24.60087 -23.67655 -22.43734 -21.65616 -20.63518 -20.18817 -19.50632 -18.46173 -17.76957 -16.99633 -16.74125 -16.32314 -16.15349 -15.85291 -15.29823 -14.91299 -14.76690 -14.69367 -14.43678 -14.05520 -13.76633 -13.51753 -13.21125 -13.00963 -12.81642 -12.70173 -12.62046 -12.43711 -12.18204 -11.69567 -11.68675 -11.37802 -11.27165 -11.08575 -11.00570 -10.95840 -10.90848 -10.70547 -10.42754 -10.19215 -10.05456 -9.81542 -9.72911 -9.56310 -9.38077 -9.33409 -9.14101 -8.85255 -6.94812 -5.77501 -3.05908 0.93512 2.03617 2.29059 2.90966 2.94014 3.43750 3.48218 3.49154 3.87370 4.03160 4.23747 4.28647 4.37259 4.51773 4.52268 4.55762 4.65994 4.73793 4.77872 4.85416 5.09337 5.17013 5.26155 5.27478 5.35931 5.37945 5.41503 5.43473 5.44086 5.49907 5.52642 5.68756 5.75840 5.86808 5.89523 5.91275 5.96377 6.03256 6.17348 6.18266 6.21221 6.35809 6.41084 6.43708 6.44304 6.63504 6.91707 7.12571 7.18405 7.69828 7.74317 7.85943 8.41399 9.52299 10.11038 10.45395 11.44885 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.001729 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.803497 B =16189.732942 C =16717.110115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.129 4.129 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.129 4.129 15 C 0.125 3.875 16 N -0.701 5.701 17 C 0.591 3.409 18 O -0.541 6.541 19 C -0.039 4.039 20 C -0.191 4.191 21 C -0.006 4.006 22 N -0.276 5.276 23 N -0.243 5.243 24 C 0.110 3.890 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.124 4.124 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.403 0.597 40 H 0.160 0.840 41 H 0.186 0.814 42 H 0.152 0.848 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -30.317 2.292 31.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.168 4.168 15 C 0.021 3.979 16 N -0.351 5.351 17 C 0.377 3.623 18 O -0.419 6.419 19 C -0.168 4.168 20 C -0.220 4.220 21 C -0.181 4.181 22 N -0.108 5.108 23 N -0.030 5.030 24 C 0.009 3.991 25 C -0.177 4.177 26 C -0.175 4.175 27 C -0.180 4.180 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.238 0.762 40 H 0.177 0.823 41 H 0.203 0.797 42 H 0.169 0.831 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.450 -31.026 0.683 31.915 hybrid contribution -0.177 1.609 1.174 1.999 sum 7.273 -29.417 1.857 30.360 Atomic orbital electron populations 1.69651 1.05115 1.25797 1.57566 1.24759 0.95527 0.97751 1.02932 0.86267 0.78531 0.83534 0.77849 1.21257 1.21701 1.21275 1.19264 0.91045 0.84284 1.42824 0.91181 1.42409 1.05727 0.99902 1.87073 1.21535 0.95219 0.84825 0.92780 1.23218 1.00660 0.96715 0.96198 1.22074 0.96209 0.92369 0.99643 1.23641 1.01113 0.94438 0.99752 1.23196 0.99082 0.95057 0.99432 1.22739 0.96486 0.80730 0.97964 1.45775 1.66759 1.12312 1.10222 1.16974 0.76846 0.82109 0.86403 1.90753 1.53314 1.84412 1.13428 1.21499 1.10478 0.91205 0.93568 1.22269 1.07485 0.98177 0.94041 1.23568 1.04096 0.94633 0.95814 1.73088 1.20518 1.18692 0.98517 1.45831 1.43091 1.06214 1.07910 1.23876 0.99133 1.01136 0.74913 1.23313 0.99278 0.95217 0.99885 1.22699 0.97265 0.99638 0.97853 1.23362 0.94632 1.00253 0.99798 1.23144 0.96388 0.94146 1.02535 0.93452 0.78116 0.90804 0.92069 0.89992 0.90254 0.92698 0.90665 0.89707 0.86659 0.76151 0.82257 0.79707 0.83097 0.88124 0.90355 0.89270 0.90140 0.90115 0.89056 0.89738 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.73 5.40 -52.48 -0.28 -18.02 16 10 C 0.17 3.27 4.48 -66.95 -0.30 2.97 16 11 C -0.13 -2.06 7.59 -26.28 -0.20 -2.26 16 12 C -0.10 -1.36 1.11 -154.71 -0.17 -1.53 16 13 C -0.15 -2.45 7.64 -26.29 -0.20 -2.65 16 14 C -0.13 -1.40 7.59 -26.28 -0.20 -1.59 16 15 C 0.12 1.35 4.21 -66.95 -0.28 1.07 16 16 N -0.70 -6.60 5.33 -54.01 -0.29 -6.89 16 17 C 0.59 6.77 7.79 -12.64 -0.10 6.67 16 18 O -0.54 -7.66 14.19 5.25 0.07 -7.58 16 19 C -0.04 -0.41 6.96 -82.06 -0.57 -0.98 16 20 C -0.19 -1.55 10.50 -38.98 -0.41 -1.96 16 21 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 22 N -0.28 -2.83 11.06 30.59 0.34 -2.49 16 23 N -0.24 -2.57 3.48 -49.90 -0.17 -2.75 16 24 C 0.11 1.02 4.36 -67.12 -0.29 0.73 16 25 C -0.14 -1.01 7.69 -25.92 -0.20 -1.21 16 26 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16 27 C -0.14 -1.10 7.88 -25.92 -0.20 -1.31 16 28 C -0.12 -1.46 7.64 -26.29 -0.20 -1.66 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.38 10.14 7.92 -40.82 -0.32 9.81 16 31 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.12 1.42 7.53 -51.93 -0.39 1.03 16 39 H 0.40 2.77 7.80 -40.82 -0.32 2.45 16 40 H 0.16 0.81 7.62 -52.49 -0.40 0.41 16 41 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.15 1.59 5.86 -51.93 -0.30 1.28 16 43 H 0.10 0.79 7.55 -51.93 -0.39 0.40 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -32.52 406.80 -10.51 -43.02 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.01 Total: 10.96 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.99 Total: -12.34 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.32 Total: -57.47 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.07 Total: -7.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.52 -10.51 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963808880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.691 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds