Wall clock time and date at job start Wed Apr 1 2020 02:54:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00358 * 2 1
4 4 H 1.48497 * 109.47393 * 240.00420 * 3 2 1
5 5 H 1.48506 * 109.47057 * 0.02562 * 3 2 1
6 6 H 1.48496 * 109.46937 * 120.00143 * 3 2 1
7 7 C 1.38809 * 119.99601 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00185 * 179.97438 * 7 2 1
9 9 N 1.36930 * 120.00396 * 359.97438 * 7 2 1
10 10 C 1.46506 * 120.00265 * 179.97438 * 9 7 2
11 11 C 1.53948 * 113.57740 * 204.99700 * 10 9 7
12 12 C 1.52909 * 86.78042 * 220.66331 * 11 10 9
13 13 C 1.52904 * 88.04107 * 24.90450 * 12 11 10
14 14 C 1.52920 * 121.13345 * 150.62042 * 12 11 10
15 15 C 1.53947 * 86.77971 * 100.82552 * 14 12 11
16 16 N 1.46503 * 113.57829 * 139.33970 * 15 14 12
17 17 C 1.34781 * 120.00040 * 154.99742 * 16 15 14
18 18 O 1.21630 * 120.00078 * 5.20052 * 17 16 15
19 19 C 1.47157 * 119.99785 * 185.19901 * 17 16 15
20 20 C 1.38408 * 126.88543 * 5.10746 * 19 17 16
21 21 C 1.39675 * 105.35743 * 179.97438 * 20 19 17
22 22 N 1.30862 * 107.86246 * 0.02562 * 21 20 19
23 23 N 1.28436 * 110.92801 * 359.97438 * 22 21 20
24 24 C 1.46505 * 125.19016 * 180.02562 * 23 22 21
25 25 C 1.53781 * 113.61385 * 31.87029 * 24 23 22
26 26 C 1.53772 * 87.08252 * 220.02024 * 25 24 23
27 27 C 1.53780 * 113.61254 * 294.37313 * 24 23 22
28 28 C 1.52909 * 121.14149 * 259.17898 * 12 11 10
29 29 H 0.97005 * 119.99644 * 359.97438 * 1 2 3
30 30 H 0.97004 * 119.99921 * 359.97438 * 9 7 2
31 31 H 1.08993 * 112.87672 * 336.14192 * 10 9 7
32 32 H 1.09001 * 113.66135 * 106.19646 * 11 10 9
33 33 H 1.08994 * 113.75447 * 335.14835 * 11 10 9
34 34 H 1.08997 * 113.66830 * 89.57362 * 13 12 11
35 35 H 1.09005 * 113.65928 * 220.62662 * 13 12 11
36 36 H 1.08998 * 113.66090 * 346.34919 * 14 12 11
37 37 H 1.09002 * 113.65789 * 215.29818 * 14 12 11
38 38 H 1.08999 * 113.57829 * 270.04451 * 15 14 12
39 39 H 0.97003 * 119.99684 * 334.99433 * 16 15 14
40 40 H 1.07998 * 127.32139 * 359.97438 * 20 19 17
41 41 H 1.07997 * 126.06514 * 180.02562 * 21 20 19
42 42 H 1.09003 * 112.84783 * 163.17690 * 24 23 22
43 43 H 1.09000 * 113.61546 * 334.56904 * 25 24 23
44 44 H 1.08998 * 113.61118 * 105.46887 * 25 24 23
45 45 H 1.09007 * 113.61808 * 270.88683 * 26 25 24
46 46 H 1.08995 * 113.62047 * 139.98321 * 26 25 24
47 47 H 1.09001 * 113.61312 * 254.52605 * 27 24 23
48 48 H 1.08998 * 113.61516 * 25.43541 * 27 24 23
49 49 H 1.09001 * 113.66120 * 144.70542 * 28 12 11
50 50 H 1.09002 * 113.66092 * 13.65438 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1040 1.6962 1.2125
7 6 2.0101 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0017
11 6 1.2579 -4.8292 -0.5978
12 6 1.8335 -5.6838 0.5320
13 6 2.0038 -4.4003 1.3453
14 6 1.0605 -6.8783 1.0924
15 6 1.9760 -7.7651 0.2291
16 7 2.4117 -8.9900 0.9044
17 6 2.7659 -10.0697 0.1795
18 8 2.8149 -9.9983 -1.0337
19 6 3.0934 -11.3349 0.8559
20 6 2.9908 -11.6039 2.2097
21 6 3.4124 -12.9273 2.3569
22 7 3.7331 -13.3805 1.1719
23 7 3.5593 -12.4793 0.2735
24 6 3.8207 -12.6523 -1.1576
25 6 3.5801 -14.0860 -1.6588
26 6 4.8419 -13.9127 -2.5204
27 6 5.3063 -12.8691 -1.4906
28 6 3.0116 -6.6276 0.2881
29 1 -0.4850 0.8401 0.0004
30 1 0.3554 -2.3880 0.0002
31 1 3.0649 -3.5644 -0.4086
32 1 1.5958 -5.1300 -1.5895
33 1 0.1774 -4.6978 -0.5400
34 1 1.1333 -4.1468 1.9503
35 1 2.9377 -4.3583 1.9060
36 1 0.0140 -6.9035 0.7888
37 1 1.1957 -7.0228 2.1643
38 1 1.5861 -7.9500 -0.7719
39 1 2.4454 -9.0239 1.8732
40 1 2.6559 -10.9331 2.9871
41 1 3.4645 -13.4786 3.2841
42 1 3.3428 -11.8880 -1.7705
43 1 3.6827 -14.8433 -0.8816
44 1 2.6655 -14.1972 -2.2413
45 1 4.6430 -13.4940 -3.5070
46 1 5.4719 -14.8014 -2.5560
47 1 5.7852 -11.9979 -1.9374
48 1 5.8808 -13.2937 -0.6675
49 1 3.6952 -6.7017 1.1339
50 1 3.5237 -6.4526 -0.6581
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000963808880.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:06
Heat of formation + Delta-G solvation = 98.924850 kcal
Electronic energy + Delta-G solvation = -29233.428224 eV
Core-core repulsion = 25263.901288 eV
Total energy + Delta-G solvation = -3969.526936 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-43.59451 -41.63985 -40.09694 -39.47272 -37.25433 -35.32609 -33.87570 -32.72263
-31.92439 -31.10068 -26.78572 -26.76176 -26.69934 -26.55307 -26.08512 -25.00351
-23.28453 -22.54256 -21.51126 -21.34313 -20.23200 -19.50072 -19.09663 -18.54300
-17.59250 -17.05256 -17.00869 -16.81317 -16.46232 -16.07434 -15.92747 -15.66966
-15.48346 -15.24217 -15.01295 -14.45441 -14.38415 -13.85379 -13.64325 -13.62724
-13.60126 -13.46922 -13.28430 -13.08732 -12.94743 -12.79531 -12.36128 -12.27878
-12.23961 -12.08978 -11.93596 -11.87294 -11.67501 -11.63803 -11.34562 -11.04952
-11.02611 -10.78916 -10.72060 -10.34236 -10.00771 -9.93879 -8.95554 -7.93495
-5.21289 0.19711 1.35694 1.47504 1.50310 1.56404 1.65291 2.12087
2.16223 2.57377 3.28083 3.37565 3.43592 3.49137 3.51623 3.55553
3.70557 3.71110 3.75675 3.84017 3.95938 4.01526 4.14036 4.29892
4.35226 4.46008 4.49403 4.60382 4.63009 4.66165 4.72368 4.81303
4.82942 4.83669 4.85824 4.93477 4.95761 4.96304 5.02490 5.04459
5.10769 5.12093 5.26848 5.31551 5.45249 5.53095 5.59565 5.63154
5.72322 5.77528 6.28995 6.40683 7.02725 7.12274 7.34655 8.13111
8.35800 9.29588
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.025111 B = 0.001729 C = 0.001675
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.803497 B =16189.732942 C =16717.110115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.970 5.970
2 C -0.078 4.078
3 Si 0.972 3.028
4 H -0.279 1.279
5 H -0.296 1.296
6 H -0.278 1.278
7 C -0.244 4.244
8 H 0.075 0.925
9 N -0.729 5.729
10 C 0.145 3.855
11 C -0.123 4.123
12 C -0.089 4.089
13 C -0.137 4.137
14 C -0.116 4.116
15 C 0.133 3.867
16 N -0.686 5.686
17 C 0.590 3.410
18 O -0.576 6.576
19 C -0.067 4.067
20 C -0.176 4.176
21 C -0.010 4.010
22 N -0.294 5.294
23 N -0.254 5.254
24 C 0.096 3.904
25 C -0.134 4.134
26 C -0.124 4.124
27 C -0.140 4.140
28 C -0.120 4.120
29 H 0.250 0.750
30 H 0.373 0.627
31 H 0.068 0.932
32 H 0.065 0.935
33 H 0.075 0.925
34 H 0.067 0.933
35 H 0.062 0.938
36 H 0.078 0.922
37 H 0.110 0.890
38 H 0.100 0.900
39 H 0.419 0.581
40 H 0.193 0.807
41 H 0.217 0.783
42 H 0.135 0.865
43 H 0.095 0.905
44 H 0.082 0.918
45 H 0.098 0.902
46 H 0.094 0.906
47 H 0.076 0.924
48 H 0.085 0.915
49 H 0.100 0.900
50 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.923 -32.036 3.804 33.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.620 5.620
2 C -0.270 4.270
3 Si 0.801 3.199
4 H -0.205 1.205
5 H -0.222 1.222
6 H -0.204 1.204
7 C -0.376 4.376
8 H 0.093 0.907
9 N -0.366 5.366
10 C 0.036 3.964
11 C -0.162 4.162
12 C -0.090 4.090
13 C -0.178 4.178
14 C -0.154 4.154
15 C 0.029 3.971
16 N -0.337 5.337
17 C 0.376 3.624
18 O -0.456 6.456
19 C -0.195 4.195
20 C -0.204 4.204
21 C -0.185 4.185
22 N -0.127 5.127
23 N -0.042 5.042
24 C -0.004 4.004
25 C -0.172 4.172
26 C -0.162 4.162
27 C -0.179 4.179
28 C -0.158 4.158
29 H 0.059 0.941
30 H 0.205 0.795
31 H 0.086 0.914
32 H 0.084 0.916
33 H 0.094 0.906
34 H 0.086 0.914
35 H 0.081 0.919
36 H 0.096 0.904
37 H 0.128 0.872
38 H 0.118 0.882
39 H 0.257 0.743
40 H 0.210 0.790
41 H 0.233 0.767
42 H 0.152 0.848
43 H 0.113 0.887
44 H 0.101 0.899
45 H 0.116 0.884
46 H 0.112 0.888
47 H 0.095 0.905
48 H 0.104 0.896
49 H 0.119 0.881
50 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 8.500 -32.794 2.226 33.950
hybrid contribution -0.453 2.065 0.728 2.236
sum 8.047 -30.728 2.954 31.901
Atomic orbital electron populations
1.69810 1.06562 1.26047 1.59627 1.25562 0.96402 1.01086 1.03924
0.85228 0.77202 0.79293 0.78146 1.20536 1.22217 1.20375 1.19663
0.91471 0.85517 1.40932 0.90731 1.42594 1.05343 1.01063 1.87639
1.21931 0.95069 0.83853 0.95587 1.23081 0.99900 0.95712 0.97476
1.21875 0.97854 0.92092 0.97226 1.23393 1.00997 0.95366 0.98037
1.23169 0.98867 0.92571 1.00758 1.22461 0.96018 0.81098 0.97555
1.45573 1.65935 1.11249 1.10894 1.17177 0.76363 0.82777 0.86058
1.90740 1.54901 1.85007 1.14982 1.21599 1.12195 0.91001 0.94659
1.22709 1.05677 0.98484 0.93566 1.24198 1.03017 0.95020 0.96222
1.73077 1.21178 1.19149 0.99310 1.45956 1.43626 1.06392 1.08225
1.23938 0.99993 1.01678 0.74778 1.23274 1.00196 0.93799 0.99891
1.22693 0.96404 0.99516 0.97574 1.23332 0.93708 1.00678 1.00152
1.23174 0.96194 0.93676 1.02761 0.94083 0.79467 0.91386 0.91619
0.90622 0.91435 0.91910 0.90357 0.87198 0.88211 0.74310 0.79034
0.76681 0.84782 0.88669 0.89888 0.88358 0.88757 0.90482 0.89641
0.88117 0.91752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16
2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16
3 Si 0.97 46.29 29.55 68.60 2.03 48.32 16
4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
7 C -0.24 -13.63 9.97 84.03 0.84 -12.79 16
8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16
9 N -0.73 -36.90 5.40 -319.94 -1.73 -38.62 16
10 C 0.14 5.65 4.48 45.62 0.20 5.85 16
11 C -0.12 -3.89 7.59 30.88 0.23 -3.66 16
12 C -0.09 -2.23 1.11 -52.31 -0.06 -2.29 16
13 C -0.14 -4.37 7.64 30.88 0.24 -4.13 16
14 C -0.12 -2.16 7.59 30.89 0.23 -1.93 16
15 C 0.13 2.62 4.21 45.62 0.19 2.81 16
16 N -0.69 -11.28 5.33 -443.05 -2.36 -13.65 16
17 C 0.59 12.90 7.79 86.58 0.67 13.57 16
18 O -0.58 -16.41 14.19 -4.13 -0.06 -16.47 16
19 C -0.07 -1.31 6.96 40.79 0.28 -1.02 16
20 C -0.18 -2.35 10.50 22.66 0.24 -2.11 16
21 C -0.01 -0.13 12.03 85.18 1.02 0.89 16
22 N -0.29 -5.69 11.06 -57.14 -0.63 -6.32 16
23 N -0.25 -5.24 3.48 -311.80 -1.08 -6.32 16
24 C 0.10 1.81 4.36 45.52 0.20 2.01 16
25 C -0.13 -1.90 7.69 31.12 0.24 -1.66 16
26 C -0.12 -1.37 8.08 31.12 0.25 -1.12 16
27 C -0.14 -2.16 7.88 31.12 0.25 -1.92 16
28 C -0.12 -2.58 7.64 30.88 0.24 -2.34 16
29 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16
30 H 0.37 20.26 7.92 -92.70 -0.73 19.53 16
31 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16
32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
33 H 0.08 2.50 8.12 -2.39 -0.02 2.48 16
34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16
36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
37 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16
38 H 0.10 2.36 7.53 -2.39 -0.02 2.35 16
39 H 0.42 4.22 7.80 -92.71 -0.72 3.50 16
40 H 0.19 1.10 7.62 -2.91 -0.02 1.08 16
41 H 0.22 1.43 8.06 -2.91 -0.02 1.40 16
42 H 0.13 2.96 5.86 -2.39 -0.01 2.95 16
43 H 0.09 1.46 7.55 -2.39 -0.02 1.44 16
44 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16
45 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16
46 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
49 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16
50 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
Total: -1.00 -72.06 406.80 1.68 -70.38
By element:
Atomic # 1 Polarization: 36.31 SS G_CDS: -0.50 Total: 35.81 kcal
Atomic # 6 Polarization: -19.58 SS G_CDS: 5.74 Total: -13.84 kcal
Atomic # 7 Polarization: -118.68 SS G_CDS: -5.52 Total: -124.21 kcal
Atomic # 8 Polarization: -16.41 SS G_CDS: -0.06 Total: -16.47 kcal
Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal
Total: -72.06 1.68 -70.38 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963808880.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 169.304 kcal
(2) G-P(sol) polarization free energy of solvation -72.064 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds