Wall clock time and date at job start Wed Apr 1 2020 02:59:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00259 * 2 1
4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1
5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1
6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1
7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1
9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1
10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2
11 11 C 1.53957 * 113.57881 * 252.71596 * 10 9 7
12 12 C 1.52908 * 86.77985 * 220.66181 * 11 10 9
13 13 C 1.52906 * 88.04670 * 24.89915 * 12 11 10
14 14 C 1.52908 * 121.13486 * 150.62044 * 12 11 10
15 15 C 1.53946 * 86.78728 * 100.81569 * 14 12 11
16 16 N 1.46494 * 113.58449 * 270.13473 * 15 14 12
17 17 C 1.34779 * 119.99833 * 252.71596 * 16 15 14
18 18 O 1.21277 * 119.99982 * 359.97438 * 17 16 15
19 19 C 1.50706 * 119.99854 * 179.97438 * 17 16 15
20 20 H 1.09004 * 109.68065 * 299.99991 * 19 17 16
21 21 C 1.53400 * 109.67829 * 179.48480 * 19 17 16
22 22 C 1.53119 * 109.44559 * 190.62700 * 21 19 17
23 23 C 1.53351 * 109.53628 * 69.99903 * 22 21 19
24 24 C 1.50867 * 108.41467 * 310.02024 * 23 22 21
25 25 N 1.33574 * 128.03677 * 196.74171 * 24 23 22
26 26 C 1.30747 * 109.15087 * 179.90131 * 25 24 23
27 27 N 1.35308 * 108.76838 * 0.02562 * 26 25 24
28 28 H 0.96994 * 126.50656 * 180.02562 * 27 26 25
29 29 C 1.35079 * 124.00052 * 16.66062 * 24 23 22
30 30 C 1.52910 * 121.13551 * 259.17577 * 12 11 10
31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3
32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2
33 33 H 1.09008 * 112.82523 * 23.90601 * 10 9 7
34 34 H 1.08996 * 113.65960 * 335.13505 * 11 10 9
35 35 H 1.09003 * 113.65851 * 106.19191 * 11 10 9
36 36 H 1.08994 * 113.66412 * 220.62911 * 13 12 11
37 37 H 1.08994 * 113.66448 * 89.57021 * 13 12 11
38 38 H 1.09005 * 113.66607 * 215.29021 * 14 12 11
39 39 H 1.09000 * 113.66345 * 346.34441 * 14 12 11
40 40 H 1.08999 * 113.65746 * 139.34233 * 15 14 12
41 41 H 0.97001 * 120.00595 * 72.70877 * 16 15 14
42 42 H 1.09005 * 109.47242 * 310.61179 * 21 19 17
43 43 H 1.08991 * 109.47980 * 70.62867 * 21 19 17
44 44 H 1.09000 * 109.46188 * 190.02286 * 22 21 19
45 45 H 1.09003 * 109.46163 * 309.98265 * 22 21 19
46 46 H 1.09001 * 109.67343 * 69.74853 * 23 22 21
47 47 H 1.09001 * 109.67743 * 190.25547 * 23 22 21
48 48 H 1.08005 * 125.61814 * 180.02562 * 26 25 24
49 49 H 1.08997 * 113.66407 * 13.65602 * 30 12 11
50 50 H 1.09004 * 113.66000 * 144.62140 * 30 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0463 1.4002
5 1 3.5478 1.4401 -0.7000
6 1 1.4477 2.6527 -0.6999
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3256 -2.3881 -0.0016
10 6 2.0580 -3.6568 -0.0016
11 6 2.0039 -4.3991 -1.3493
12 6 1.8336 -5.6833 -0.5369
13 6 1.2580 -4.8298 0.5937
14 6 1.0607 -6.8773 -1.0983
15 6 2.4303 -7.5027 -1.4190
16 7 2.9350 -7.1574 -2.7502
17 6 2.9431 -8.0839 -3.7291
18 8 2.5330 -9.2035 -3.5076
19 6 3.4618 -7.7285 -5.0987
20 1 2.8696 -6.9138 -5.5155
21 6 3.3745 -8.9534 -6.0180
22 6 4.1382 -8.6728 -7.3151
23 6 5.6433 -8.6281 -7.0246
24 6 5.8753 -7.7068 -5.8527
25 7 7.0222 -7.1438 -5.4628
26 6 6.8017 -6.4109 -4.4028
27 7 5.4889 -6.4894 -4.0847
28 1 5.0471 -6.0457 -3.3439
29 6 4.9052 -7.3084 -5.0014
30 6 3.0118 -6.6272 -0.2939
31 1 -0.4850 -0.8401 -0.0004
32 1 0.3556 -2.3880 -0.0016
33 1 3.0646 -3.5639 0.4064
34 1 1.1332 -4.1452 -1.9539
35 1 2.9377 -4.3567 -1.9099
36 1 1.5960 -5.1313 1.5850
37 1 0.1778 -4.6969 0.5351
38 1 0.4950 -7.4257 -0.3450
39 1 0.4704 -6.6394 -1.9832
40 1 2.4827 -8.5714 -1.2111
41 1 3.2633 -6.2620 -2.9274
42 1 3.8140 -9.8159 -5.5168
43 1 2.3297 -9.1608 -6.2490
44 1 3.9309 -9.4629 -8.0368
45 1 3.8188 -7.7144 -7.7245
46 1 5.9998 -9.6289 -6.7808
47 1 6.1748 -8.2520 -7.8987
48 1 7.5449 -5.8372 -3.8690
49 1 3.9801 -6.1896 -0.5363
50 1 2.9953 -7.1041 0.6861
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000965012223.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:49
Heat of formation + Delta-G solvation = 45.500143 kcal
Electronic energy + Delta-G solvation = -30513.978448 eV
Core-core repulsion = 26542.134843 eV
Total energy + Delta-G solvation = -3971.843605 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-43.44707 -41.91303 -40.44841 -37.69822 -37.11396 -35.52100 -34.56319 -33.35223
-31.40251 -30.94154 -29.91040 -26.89911 -26.71754 -26.14875 -25.52254 -23.87487
-23.24162 -22.71186 -21.95377 -21.32073 -19.91428 -19.59587 -19.14510 -18.93442
-18.12765 -17.20819 -16.85462 -16.59757 -16.35344 -16.05073 -15.80432 -15.71264
-15.49420 -15.37416 -15.02965 -14.66622 -14.52550 -14.26533 -13.92977 -13.74372
-13.68757 -13.48387 -13.08008 -13.02075 -12.84894 -12.71585 -12.43974 -12.21672
-12.13936 -11.90461 -11.87534 -11.85671 -11.53974 -11.41810 -11.23389 -11.19021
-10.90710 -10.88490 -10.79484 -10.69118 -10.18564 -9.20962 -9.10107 -8.39974
-5.33869 0.89907 1.39425 1.57470 1.67619 1.81350 1.88917 2.06363
2.14876 2.70560 3.34815 3.39040 3.41261 3.45295 3.46151 3.57049
3.68047 3.76995 3.79308 3.81250 4.05153 4.12161 4.21731 4.25119
4.30979 4.38894 4.48410 4.49271 4.54089 4.66773 4.74295 4.76765
4.80095 4.81841 4.89539 4.96076 4.97497 4.98030 5.01970 5.09412
5.11188 5.15012 5.24685 5.33419 5.41345 5.47737 5.61434 5.62834
5.71821 6.26894 6.37311 6.48074 6.99186 7.04401 7.08682 7.99055
8.12114 9.11813
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012213 B = 0.002658 C = 0.002365
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2292.084272 B =10530.193365 C =11838.080102
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.979 5.979
2 C -0.108 4.108
3 Si 1.128 2.872
4 H -0.286 1.286
5 H -0.270 1.270
6 H -0.296 1.296
7 C -0.329 4.329
8 H 0.070 0.930
9 N -0.742 5.742
10 C 0.153 3.847
11 C -0.130 4.130
12 C -0.091 4.091
13 C -0.133 4.133
14 C -0.134 4.134
15 C 0.124 3.876
16 N -0.704 5.704
17 C 0.521 3.479
18 O -0.561 6.561
19 C -0.024 4.024
20 H 0.126 0.874
21 C -0.093 4.093
22 C -0.109 4.109
23 C -0.038 4.038
24 C 0.000 4.000
25 N -0.523 5.523
26 C 0.191 3.809
27 N -0.555 5.555
28 H 0.424 0.576
29 C -0.037 4.037
30 C -0.108 4.108
31 H 0.244 0.756
32 H 0.358 0.642
33 H 0.075 0.925
34 H 0.059 0.941
35 H 0.067 0.933
36 H 0.073 0.927
37 H 0.065 0.935
38 H 0.101 0.899
39 H 0.059 0.941
40 H 0.097 0.903
41 H 0.401 0.599
42 H 0.062 0.938
43 H 0.085 0.915
44 H 0.097 0.903
45 H 0.073 0.927
46 H 0.076 0.924
47 H 0.082 0.918
48 H 0.243 0.757
49 H 0.083 0.917
50 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.635 -19.518 -10.217 24.463
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.627 5.627
2 C -0.299 4.299
3 Si 0.953 3.047
4 H -0.213 1.213
5 H -0.195 1.195
6 H -0.223 1.223
7 C -0.461 4.461
8 H 0.088 0.912
9 N -0.381 5.381
10 C 0.044 3.956
11 C -0.171 4.171
12 C -0.092 4.092
13 C -0.172 4.172
14 C -0.172 4.172
15 C 0.019 3.981
16 N -0.356 5.356
17 C 0.308 3.692
18 O -0.439 6.439
19 C -0.046 4.046
20 H 0.144 0.856
21 C -0.131 4.131
22 C -0.147 4.147
23 C -0.076 4.076
24 C -0.130 4.130
25 N -0.243 5.243
26 C -0.092 4.092
27 N -0.159 5.159
28 H 0.265 0.735
29 C -0.153 4.153
30 C -0.146 4.146
31 H 0.054 0.946
32 H 0.190 0.810
33 H 0.093 0.907
34 H 0.078 0.922
35 H 0.086 0.914
36 H 0.092 0.908
37 H 0.083 0.917
38 H 0.119 0.881
39 H 0.078 0.922
40 H 0.115 0.885
41 H 0.237 0.763
42 H 0.081 0.919
43 H 0.104 0.896
44 H 0.115 0.885
45 H 0.092 0.908
46 H 0.095 0.905
47 H 0.101 0.899
48 H 0.259 0.741
49 H 0.102 0.898
50 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 11.236 -18.768 -10.447 24.241
hybrid contribution -1.339 -0.498 1.020 1.755
sum 9.897 -19.265 -9.427 23.621
Atomic orbital electron populations
1.70971 1.07306 1.27880 1.56553 1.27170 0.97097 1.04762 1.00837
0.82618 0.73660 0.71645 0.76795 1.21300 1.19524 1.22274 1.20468
0.92409 0.87090 1.46108 0.91241 1.42659 1.04518 1.02065 1.88871
1.21872 0.95319 0.83293 0.95152 1.23335 1.00696 0.94861 0.98195
1.22214 0.97976 0.92149 0.96852 1.23172 0.99447 0.96241 0.98371
1.23253 0.96478 0.96517 1.00989 1.21845 0.94813 0.99626 0.81841
1.45818 1.64401 1.14482 1.10913 1.20883 0.77133 0.84507 0.86697
1.90693 1.48205 1.22252 1.82771 1.19989 0.89836 1.01934 0.92862
0.85593 1.21416 1.02243 0.94701 0.94752 1.21605 0.92780 1.03686
0.96650 1.20074 0.97317 0.96759 0.93472 1.20976 0.88421 1.03100
1.00493 1.70024 1.28209 1.12931 1.13107 1.25799 0.84925 1.02107
0.96331 1.43073 1.10214 1.37478 1.25096 0.73507 1.20523 0.95805
1.02545 0.96445 1.23069 0.97168 0.95174 0.99151 0.94603 0.81016
0.90727 0.92235 0.91450 0.90808 0.91674 0.88077 0.92223 0.88451
0.76302 0.91906 0.89619 0.88475 0.90815 0.90548 0.89950 0.74135
0.89843 0.86726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -60.69 13.70 21.65 0.30 -60.39 16
2 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16
3 Si 1.13 50.77 29.92 68.60 2.05 52.82 16
4 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16
5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16
6 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16
7 C -0.33 -17.82 9.97 84.03 0.84 -16.98 16
8 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16
9 N -0.74 -35.80 5.40 -319.92 -1.73 -37.53 16
10 C 0.15 5.47 4.48 45.63 0.20 5.67 16
11 C -0.13 -3.73 7.18 30.89 0.22 -3.51 16
12 C -0.09 -2.06 1.02 -52.32 -0.05 -2.11 16
13 C -0.13 -3.86 7.59 30.89 0.23 -3.63 16
14 C -0.13 -2.79 7.64 30.88 0.24 -2.56 16
15 C 0.12 2.32 4.32 45.63 0.20 2.52 16
16 N -0.70 -12.55 4.80 -439.52 -2.11 -14.66 16
17 C 0.52 10.98 7.14 87.66 0.63 11.60 16
18 O -0.56 -15.70 15.43 -3.02 -0.05 -15.75 16
19 C -0.02 -0.40 2.90 -12.17 -0.04 -0.44 16
20 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16
21 C -0.09 -1.45 4.68 30.77 0.14 -1.31 16
22 C -0.11 -1.33 5.90 30.75 0.18 -1.15 16
23 C -0.04 -0.61 6.30 30.02 0.19 -0.42 16
24 C 0.00 0.00 6.98 41.62 0.29 0.29 16
25 N -0.52 -11.97 11.25 -187.86 -2.11 -14.08 16
26 C 0.19 3.21 13.05 180.11 2.35 5.56 16
27 N -0.55 -8.64 5.90 -186.45 -1.10 -9.74 16
28 H 0.42 4.95 6.82 -92.71 -0.63 4.32 16
29 C -0.04 -0.68 6.32 41.16 0.26 -0.42 16
30 C -0.11 -1.82 7.59 30.89 0.23 -1.59 16
31 H 0.24 15.05 6.77 -92.71 -0.63 14.42 16
32 H 0.36 18.42 6.75 -92.71 -0.63 17.79 16
33 H 0.07 2.66 8.10 -2.38 -0.02 2.64 16
34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
35 H 0.07 1.63 7.47 -2.39 -0.02 1.62 16
36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
37 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16
38 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16
39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.10 2.01 7.46 -2.39 -0.02 1.99 16
41 H 0.40 6.04 5.61 -92.71 -0.52 5.52 16
42 H 0.06 1.21 7.74 -2.38 -0.02 1.19 16
43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
45 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16
46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
48 H 0.24 2.09 8.06 -2.91 -0.02 2.06 16
49 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
50 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16
Total: -1.00 -75.28 394.66 1.18 -74.10
By element:
Atomic # 1 Polarization: 40.02 SS G_CDS: -0.66 Total: 39.36 kcal
Atomic # 6 Polarization: -20.71 SS G_CDS: 6.58 Total: -14.13 kcal
Atomic # 7 Polarization: -129.65 SS G_CDS: -6.75 Total: -136.40 kcal
Atomic # 8 Polarization: -15.70 SS G_CDS: -0.05 Total: -15.75 kcal
Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal
Total: -75.28 1.18 -74.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000965012223.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.603 kcal
(2) G-P(sol) polarization free energy of solvation -75.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.103 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds