Wall clock time and date at job start Wed Apr 1 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48504 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47150 * 300.00059 * 3 2 1 6 6 H 1.48496 * 109.47128 * 60.00205 * 3 2 1 7 7 C 1.38814 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99748 * 187.81839 * 7 2 1 9 9 N 1.36934 * 120.00263 * 7.82129 * 7 2 1 10 10 C 1.48146 * 127.83476 * 15.63410 * 9 7 2 11 11 C 1.54391 * 104.61727 * 140.39937 * 10 9 7 12 12 H 1.09003 * 118.18481 * 244.20561 * 11 10 9 13 13 C 1.53002 * 118.12626 * 87.18683 * 11 10 9 14 14 H 1.08994 * 117.43793 * 16.06969 * 13 11 10 15 15 C 1.52993 * 117.44250 * 160.81033 * 13 11 10 16 16 N 1.46502 * 109.47151 * 185.00155 * 15 13 11 17 17 C 1.34777 * 120.00268 * 179.97438 * 16 15 13 18 18 O 1.21627 * 119.99601 * 4.62914 * 17 16 15 19 19 C 1.47159 * 120.00189 * 184.89584 * 17 16 15 20 20 C 1.38406 * 126.88306 * 174.27497 * 19 17 16 21 21 C 1.39676 * 105.35670 * 179.86258 * 20 19 17 22 22 N 1.30868 * 107.86433 * 0.40951 * 21 20 19 23 23 N 1.28450 * 110.92511 * 359.73802 * 22 21 20 24 24 C 1.46496 * 125.18816 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47282 * 3.42449 * 24 23 22 26 26 C 1.53778 * 113.61567 * 273.47628 * 25 24 23 27 27 C 1.53953 * 87.02082 * 220.05040 * 26 25 24 28 28 C 1.53781 * 87.11387 * 25.36178 * 27 26 25 29 29 C 1.53001 * 60.55668 * 268.46206 * 13 11 10 30 30 H 1.09001 * 119.54009 * 248.23010 * 29 13 11 31 31 C 1.48140 * 127.83905 * 195.61432 * 9 7 2 32 32 H 0.96998 * 120.00226 * 359.97438 * 1 2 3 33 33 H 1.09000 * 110.41254 * 21.61583 * 10 9 7 34 34 H 1.09004 * 110.40768 * 259.17870 * 10 9 7 35 35 H 1.09007 * 109.47261 * 65.00258 * 15 13 11 36 36 H 1.08997 * 109.47317 * 305.00463 * 15 13 11 37 37 H 0.97001 * 120.00216 * 0.02562 * 16 15 13 38 38 H 1.07997 * 127.32352 * 0.02562 * 20 19 17 39 39 H 1.07999 * 126.07134 * 180.11304 * 21 20 19 40 40 H 1.09001 * 109.46528 * 123.42785 * 24 23 22 41 41 H 1.09004 * 109.47108 * 243.41774 * 24 23 22 42 42 H 1.09000 * 112.84550 * 44.67438 * 25 24 23 43 43 H 1.08999 * 113.61170 * 334.56714 * 26 25 24 44 44 H 1.08996 * 113.61408 * 105.46697 * 26 25 24 45 45 H 1.09001 * 113.53812 * 270.81133 * 27 26 25 46 46 H 1.08997 * 113.66797 * 139.93408 * 27 26 25 47 47 H 1.08993 * 113.62070 * 220.09484 * 28 27 26 48 48 H 1.09000 * 113.69163 * 89.19250 * 28 27 26 49 49 H 1.08997 * 110.41115 * 100.82144 * 31 9 7 50 50 H 1.09003 * 110.51096 * 338.43481 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0828 -1.2065 0.1267 9 7 1.3353 -2.3825 -0.1624 10 6 -0.0468 -2.5782 -0.6587 11 6 0.0345 -3.8340 -1.5531 12 1 -0.1720 -3.7222 -2.6176 13 6 -0.1356 -5.2030 -0.8915 14 1 -0.5664 -5.2271 0.1094 15 6 -0.5015 -6.3822 -1.7950 16 7 -0.7367 -7.5722 -0.9736 17 6 -1.0752 -8.7385 -1.5582 18 8 -1.1034 -8.8251 -2.7710 19 6 -1.4165 -9.9054 -0.7291 20 6 -1.8871 -11.1295 -1.1713 21 6 -2.0567 -11.8991 -0.0180 22 7 -1.7161 -11.1634 1.0093 23 7 -1.3378 -9.9954 0.6317 24 6 -0.8909 -8.9232 1.5244 25 6 -0.8633 -9.4374 2.9651 26 6 -2.2129 -9.3088 3.6911 27 6 -1.4116 -8.8887 4.9367 28 6 -0.3102 -8.4162 3.9732 29 6 1.2664 -4.6088 -1.0407 30 1 1.9775 -5.0741 -1.7234 31 6 1.8214 -3.7534 0.1185 32 1 -0.4850 0.8400 0.0004 33 1 -0.3667 -1.7155 -1.2430 34 1 -0.7292 -2.7484 0.1742 35 1 0.3165 -6.5757 -2.4891 36 1 -1.4051 -6.1435 -2.3559 37 1 -0.6495 -7.5207 -0.0089 38 1 -2.0796 -11.4274 -2.1913 39 1 -2.4110 -12.9187 0.0197 40 1 0.1093 -8.6020 1.2339 41 1 -1.5783 -8.0803 1.4524 42 1 -0.4126 -10.4259 3.0531 43 1 -2.8487 -8.5176 3.2937 44 1 -2.7380 -10.2567 3.8077 45 1 -1.1118 -9.7276 5.5648 46 1 -1.8738 -8.0795 5.5020 47 1 0.6985 -8.6446 4.3171 48 1 -0.4236 -7.3806 3.6523 49 1 1.4309 -4.1071 1.0726 50 1 2.9112 -3.7789 0.1217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978149297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:33 Heat of formation + Delta-G solvation = 109.545122 kcal Electronic energy + Delta-G solvation = -29908.402682 eV Core-core repulsion = 25939.336275 eV Total energy + Delta-G solvation = -3969.066406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.61535 -40.88160 -40.09597 -39.75565 -36.56091 -35.28932 -34.16508 -32.80665 -31.89975 -29.33152 -28.98960 -28.79096 -26.78123 -26.49920 -24.90040 -23.83874 -22.70010 -22.27606 -21.97223 -20.95071 -20.83094 -20.20572 -19.06375 -18.81051 -17.48831 -17.32593 -17.02355 -16.74505 -16.36415 -16.23271 -15.93393 -15.82636 -15.31561 -15.03424 -14.74597 -14.61712 -14.47367 -14.38572 -14.12960 -14.08046 -13.39462 -13.34449 -13.19403 -13.05608 -12.90220 -12.74523 -12.63732 -12.32781 -12.01745 -11.96543 -11.92111 -11.77082 -11.55765 -11.33566 -11.27111 -11.19579 -10.96436 -10.75312 -10.58864 -10.36896 -10.12227 -9.97602 -8.89914 -7.91639 -5.27954 0.15931 1.35667 1.46325 1.47331 1.57688 1.64166 1.84923 2.08982 2.47166 2.70103 3.24968 3.26812 3.39069 3.50330 3.56976 3.68997 3.70925 3.83267 3.92160 3.98647 4.05316 4.11638 4.21580 4.24205 4.26103 4.37014 4.42322 4.54113 4.57733 4.62269 4.69014 4.83443 4.86423 4.90592 4.93088 4.93768 5.02730 5.07014 5.11305 5.12666 5.26181 5.30314 5.35332 5.46009 5.50575 5.53535 5.57176 5.68004 5.71649 6.18997 6.23730 6.86809 7.01856 7.04653 7.68899 8.46500 9.21783 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.002457 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.150352 B =11391.759534 C =13076.636520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.620 5.620 10 C 0.188 3.812 11 C -0.174 4.174 12 H 0.114 0.886 13 C -0.112 4.112 14 H 0.111 0.889 15 C 0.160 3.840 16 N -0.716 5.716 17 C 0.592 3.408 18 O -0.560 6.560 19 C -0.067 4.067 20 C -0.162 4.162 21 C -0.008 4.008 22 N -0.275 5.275 23 N -0.268 5.268 24 C 0.103 3.897 25 C -0.104 4.104 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.133 4.133 29 C -0.161 4.161 30 H 0.124 0.876 31 C 0.149 3.851 32 H 0.249 0.751 33 H 0.053 0.947 34 H 0.004 0.996 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.170 0.830 39 H 0.218 0.782 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.031 0.969 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -23.966 5.468 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.062 3.938 11 C -0.194 4.194 12 H 0.132 0.868 13 C -0.131 4.131 14 H 0.129 0.871 15 C 0.037 3.963 16 N -0.371 5.371 17 C 0.378 3.622 18 O -0.438 6.438 19 C -0.193 4.193 20 C -0.192 4.192 21 C -0.183 4.183 22 N -0.108 5.108 23 N -0.059 5.059 24 C -0.016 4.016 25 C -0.122 4.122 26 C -0.170 4.170 27 C -0.177 4.177 28 C -0.171 4.171 29 C -0.180 4.180 30 H 0.142 0.858 31 C 0.024 3.976 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.248 0.752 38 H 0.187 0.813 39 H 0.234 0.766 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.049 0.951 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.528 -23.588 5.881 24.565 hybrid contribution 0.142 1.289 -0.622 1.438 sum -3.386 -22.299 5.259 23.160 Atomic orbital electron populations 1.70078 1.06423 1.25585 1.57363 1.25707 0.96504 1.01160 1.02232 0.85033 0.78316 0.79380 0.76722 1.18948 1.21925 1.21827 1.19404 0.91139 0.83583 1.42567 0.90198 1.45510 1.12797 1.01339 1.74790 1.20821 0.85915 0.93578 0.93443 1.23930 1.04318 0.91192 0.99962 0.86837 1.22394 0.98378 0.92062 1.00294 0.87073 1.20817 1.01761 0.81544 0.92221 1.46241 1.69955 1.09171 1.11756 1.17135 0.76609 0.81803 0.86675 1.90820 1.54355 1.84224 1.14376 1.21670 1.14206 0.98553 0.84915 1.22460 1.03580 0.91433 1.01682 1.24148 1.04783 1.02016 0.87385 1.73140 1.15947 0.92878 1.28834 1.46050 1.45314 1.10634 1.03882 1.22648 1.01838 0.86886 0.90244 1.22592 0.99427 1.00785 0.89434 1.22973 0.95613 1.01712 0.96745 1.22818 0.97063 1.01525 0.96255 1.22990 0.99572 0.98919 0.95595 1.23957 0.90364 1.02084 1.01615 0.85799 1.21296 0.97641 0.84198 0.94470 0.94167 0.92811 0.97801 0.90716 0.90586 0.75194 0.81277 0.76595 0.87230 0.87550 0.88068 0.90277 0.91569 0.89565 0.90901 0.90237 0.89067 0.95073 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.78 10.81 21.65 0.23 -55.54 16 2 C -0.06 -3.48 5.41 84.86 0.46 -3.02 16 3 Si 0.98 44.77 29.56 68.60 2.03 46.80 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.24 -13.04 10.36 84.03 0.87 -12.17 16 8 H 0.08 4.20 7.84 -2.91 -0.02 4.18 16 9 N -0.62 -30.83 3.38 -688.16 -2.33 -33.15 16 10 C 0.19 8.84 5.71 86.54 0.49 9.34 16 11 C -0.17 -6.06 6.85 -9.88 -0.07 -6.12 16 12 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 13 C -0.11 -2.94 5.39 -10.79 -0.06 -2.99 16 14 H 0.11 2.76 8.04 -2.39 -0.02 2.74 16 15 C 0.16 3.72 5.96 86.38 0.51 4.23 16 16 N -0.72 -14.94 5.52 -466.64 -2.57 -17.52 16 17 C 0.59 14.85 7.79 86.59 0.67 15.53 16 18 O -0.56 -17.91 16.93 -4.12 -0.07 -17.98 16 19 C -0.07 -1.47 6.96 40.78 0.28 -1.18 16 20 C -0.16 -3.19 10.85 22.66 0.25 -2.94 16 21 C -0.01 -0.13 12.03 85.18 1.02 0.89 16 22 N -0.27 -5.20 10.69 -57.14 -0.61 -5.81 16 23 N -0.27 -4.98 3.74 -334.70 -1.25 -6.23 16 24 C 0.10 1.41 4.52 86.38 0.39 1.80 16 25 C -0.10 -1.30 3.22 -10.27 -0.03 -1.34 16 26 C -0.13 -1.72 7.65 31.18 0.24 -1.49 16 27 C -0.14 -1.58 8.09 31.18 0.25 -1.33 16 28 C -0.13 -1.47 7.65 31.12 0.24 -1.23 16 29 C -0.16 -4.97 6.74 -9.88 -0.07 -5.03 16 30 H 0.12 3.41 8.12 -2.39 -0.02 3.39 16 31 C 0.15 5.69 7.04 86.54 0.61 6.30 16 32 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 33 H 0.05 2.92 6.47 -2.39 -0.02 2.91 16 34 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.07 1.80 7.94 -2.38 -0.02 1.78 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 6.64 4.08 -92.71 -0.38 6.26 16 38 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.22 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.11 1.26 7.29 -2.39 -0.02 1.25 16 41 H 0.11 1.26 7.03 -2.39 -0.02 1.24 16 42 H 0.10 1.46 7.83 -2.39 -0.02 1.44 16 43 H 0.08 1.04 7.91 -2.39 -0.02 1.02 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.47 402.50 2.06 -68.41 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.56 Total: 21.79 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.07 Total: -0.76 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -6.53 Total: -118.26 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.07 Total: -17.98 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -70.47 2.06 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978149297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.950 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds