Wall clock time and date at job start Wed Apr 1 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46965 * 269.99651 * 3 2 1 5 5 H 1.48493 * 109.47517 * 29.99716 * 3 2 1 6 6 H 1.48506 * 109.47395 * 150.00286 * 3 2 1 7 7 C 1.38815 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99691 * 170.57231 * 7 2 1 9 9 N 1.36935 * 120.00368 * 350.57010 * 7 2 1 10 10 C 1.48149 * 127.83801 * 164.33852 * 9 7 2 11 11 C 1.57692 * 104.67276 * 139.77221 * 10 9 7 12 12 H 1.09001 * 120.32305 * 244.63822 * 11 10 9 13 13 C 1.52996 * 116.10987 * 87.30766 * 11 10 9 14 14 H 1.09005 * 117.40672 * 16.95234 * 13 11 10 15 15 C 1.53000 * 117.44368 * 161.63562 * 13 11 10 16 16 N 1.46499 * 109.47495 * 244.23989 * 15 13 11 17 17 C 1.34774 * 120.00199 * 179.97438 * 16 15 13 18 18 O 1.21572 * 120.00320 * 359.97438 * 17 16 15 19 19 C 1.47711 * 120.00133 * 180.02562 * 17 16 15 20 20 C 1.41503 * 126.52227 * 180.02562 * 19 17 16 21 21 C 1.35358 * 105.50633 * 180.02562 * 20 19 17 22 22 N 1.35036 * 107.23035 * 359.97438 * 21 20 19 23 23 C 1.46499 * 124.89050 * 180.02562 * 22 21 20 24 24 C 1.54270 * 110.03098 * 32.92310 * 23 22 21 25 25 C 1.54962 * 104.16066 * 217.14026 * 24 23 22 26 26 C 1.54889 * 102.77611 * 37.89369 * 25 24 23 27 27 C 1.53875 * 110.02926 * 275.71435 * 23 22 21 28 28 N 1.28474 * 110.22852 * 0.02562 * 22 21 20 29 29 C 1.52998 * 60.55900 * 269.28786 * 13 11 10 30 30 H 1.09002 * 119.53600 * 248.23668 * 29 13 11 31 31 C 1.48143 * 127.83643 * 344.33311 * 9 7 2 32 32 H 0.96996 * 119.99567 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.40412 * 259.19740 * 10 9 7 34 34 H 1.08999 * 110.40731 * 21.51459 * 10 9 7 35 35 H 1.09001 * 109.47625 * 124.23864 * 15 13 11 36 36 H 1.09003 * 109.47294 * 4.24246 * 15 13 11 37 37 H 0.97004 * 119.99497 * 0.02562 * 16 15 13 38 38 H 1.07996 * 127.24278 * 0.04910 * 20 19 17 39 39 H 1.08002 * 126.38826 * 180.02562 * 21 20 19 40 40 H 1.08993 * 110.02106 * 154.31973 * 23 22 21 41 41 H 1.09000 * 110.48970 * 335.79565 * 24 23 22 42 42 H 1.09000 * 110.47781 * 98.43194 * 24 23 22 43 43 H 1.08993 * 110.72160 * 279.57734 * 25 24 23 44 44 H 1.09005 * 110.92022 * 156.29904 * 25 24 23 45 45 H 1.09000 * 110.48426 * 203.40257 * 26 25 24 46 46 H 1.09003 * 110.59695 * 80.81480 * 26 25 24 47 47 H 1.08997 * 110.03336 * 238.56891 * 27 23 22 48 48 H 1.09005 * 110.03247 * 359.94822 * 27 23 22 49 49 H 1.09005 * 110.40435 * 100.80275 * 31 9 7 50 50 H 1.08997 * 110.41072 * 338.37337 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3394 -2.3800 0.1954 10 6 1.8184 -3.7548 -0.0790 11 6 1.2960 -4.6102 1.1384 12 1 2.0013 -5.0726 1.8290 13 6 -0.1130 -5.1898 0.9987 14 1 -0.5439 -5.2255 -0.0019 15 6 -0.4933 -6.3492 1.9218 16 7 -0.7428 -7.5499 1.1203 17 6 -1.0945 -8.7023 1.7243 18 8 -1.2042 -8.7455 2.9343 19 6 -1.3455 -9.9130 0.9163 20 6 -1.7201 -11.1877 1.4032 21 6 -1.8354 -11.9741 0.3076 22 7 -1.5462 -11.2085 -0.7665 23 6 -1.5542 -11.6754 -2.1551 24 6 -2.6391 -12.7561 -2.3429 25 6 -2.0019 -13.7650 -3.3315 26 6 -0.5212 -13.7999 -2.8786 27 6 -0.2082 -12.3386 -2.4959 28 7 -1.2629 -10.0115 -0.3955 29 6 0.0735 -3.8120 1.6374 30 1 -0.1319 -3.6799 2.6997 31 6 -0.0299 -2.5685 0.7283 32 1 -0.4849 0.8400 -0.0004 33 1 1.4043 -4.1212 -1.0183 34 1 2.9077 -3.7787 -0.1096 35 1 -1.3940 -6.0903 2.4783 36 1 0.3221 -6.5409 2.6192 37 1 -0.6541 -7.5157 0.1550 38 1 -1.8806 -11.4729 2.4324 39 1 -2.1087 -13.0189 0.2946 40 1 -1.7396 -10.8391 -2.8289 41 1 -2.8622 -13.2419 -1.3930 42 1 -3.5418 -12.3199 -2.7706 43 1 -2.0839 -13.4044 -4.3568 44 1 -2.4596 -14.7493 -3.2320 45 1 0.1206 -14.1257 -3.6972 46 1 -0.3994 -14.4547 -2.0157 47 1 0.2593 -11.8246 -3.3357 48 1 0.4513 -12.3122 -1.6284 49 1 -0.7327 -2.7496 -0.0850 50 1 -0.3351 -1.6978 1.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978223610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:27 Heat of formation + Delta-G solvation = 97.904107 kcal Electronic energy + Delta-G solvation = -28869.215928 eV Core-core repulsion = 24899.644729 eV Total energy + Delta-G solvation = -3969.571199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.97963 -39.53584 -38.66001 -38.31961 -34.88733 -33.32793 -32.73127 -31.13742 -30.70555 -29.43960 -28.58447 -27.18257 -26.88940 -25.01419 -23.28984 -22.59608 -21.23813 -21.02435 -20.53380 -20.12136 -19.59344 -19.19353 -18.19125 -17.17272 -16.75737 -16.44835 -15.87552 -15.74276 -15.19250 -14.87217 -14.79499 -14.45490 -14.16150 -13.85221 -13.71096 -13.54897 -13.13393 -13.03020 -12.74769 -12.69849 -12.60183 -12.19271 -11.85079 -11.81507 -11.80736 -11.48241 -11.25614 -11.22324 -11.11120 -11.04399 -10.80099 -10.59035 -10.24973 -10.17077 -10.09801 -9.70757 -9.49548 -9.35973 -9.26819 -9.09129 -8.84492 -8.59839 -6.83991 -5.77855 -3.11707 1.43967 1.93183 2.09496 3.19854 3.39420 3.40906 3.44982 3.47246 3.65830 3.83080 4.16835 4.21874 4.34738 4.43408 4.48513 4.60114 4.68895 4.70900 4.77699 4.90749 4.97574 5.06552 5.17643 5.23810 5.34408 5.36679 5.40467 5.45856 5.46650 5.49271 5.51707 5.56064 5.59177 5.62951 5.83596 5.85902 5.98628 6.01838 6.18088 6.28256 6.44236 6.52163 6.60322 6.71013 6.76370 6.95686 7.39553 7.47716 7.56034 7.74314 7.77494 8.23319 8.24425 9.13219 9.76143 10.53796 11.36613 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.001778 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.906086 B =15748.377425 C =16758.836028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.156 3.844 11 C -0.171 4.171 12 H 0.107 0.893 13 C -0.153 4.153 14 H 0.103 0.897 15 C 0.154 3.846 16 N -0.710 5.710 17 C 0.602 3.398 18 O -0.538 6.538 19 C -0.016 4.016 20 C -0.178 4.178 21 C -0.021 4.021 22 N -0.274 5.274 23 C 0.142 3.858 24 C -0.136 4.136 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.136 4.136 28 N -0.259 5.259 29 C -0.162 4.162 30 H 0.102 0.898 31 C 0.184 3.816 32 H 0.254 0.746 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.408 0.592 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.024 0.976 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -31.389 -5.334 32.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.191 4.191 12 H 0.125 0.875 13 C -0.172 4.172 14 H 0.121 0.879 15 C 0.031 3.969 16 N -0.361 5.361 17 C 0.386 3.614 18 O -0.414 6.414 19 C -0.176 4.176 20 C -0.206 4.206 21 C -0.163 4.163 22 N -0.063 5.063 23 C 0.041 3.959 24 C -0.174 4.174 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.175 4.175 28 N -0.094 5.094 29 C -0.183 4.183 30 H 0.120 0.880 31 C 0.058 3.942 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.243 0.757 38 H 0.179 0.821 39 H 0.196 0.804 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.041 0.959 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.298 -30.485 -5.556 31.437 hybrid contribution 0.257 0.344 0.261 0.502 sum -5.041 -30.141 -5.295 31.015 Atomic orbital electron populations 1.69904 1.05056 1.25399 1.55795 1.24898 0.95643 0.97974 1.01836 0.86121 0.78748 0.83272 0.77609 1.21496 1.21547 1.20574 1.18984 0.90844 0.82408 1.43212 0.90627 1.45148 1.13754 0.99962 1.72915 1.21714 0.97066 0.85849 0.92459 1.24706 0.89750 1.02251 1.02437 0.87500 1.22543 1.00493 0.93948 1.00184 0.87912 1.20922 1.01109 0.82087 0.92761 1.45894 1.69082 1.09617 1.11507 1.16887 0.76817 0.81375 0.86324 1.90790 1.52697 1.84619 1.13260 1.21980 1.09537 0.96259 0.89831 1.21763 1.07065 0.91836 0.99972 1.22691 1.07791 0.99543 0.86296 1.45724 1.47152 1.05809 1.07584 1.22370 0.97271 0.98543 0.77691 1.22855 0.97481 0.95671 1.01443 1.22495 0.95264 0.99206 0.99031 1.22387 0.96552 0.95747 1.01588 1.22601 0.95611 0.96291 1.02990 1.73527 1.18410 1.03030 1.14476 1.24175 1.02287 0.91609 1.00179 0.87988 1.21073 0.86855 0.92767 0.93481 0.93576 0.95566 0.93371 0.90952 0.91281 0.75719 0.82096 0.80391 0.86878 0.89844 0.89870 0.90641 0.90491 0.90743 0.91149 0.89745 0.90493 0.95858 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 10.88 55.49 0.60 -26.44 16 2 C -0.01 -0.18 5.39 -17.43 -0.09 -0.28 16 3 Si 0.91 22.12 29.56 -169.99 -5.03 17.10 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.38 10.35 -15.06 -0.16 -6.54 16 8 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 9 N -0.59 -15.46 3.38 -166.73 -0.56 -16.02 16 10 C 0.16 3.32 7.10 -0.57 0.00 3.31 16 11 C -0.17 -3.11 7.03 -87.38 -0.61 -3.73 16 12 H 0.11 1.79 8.12 -51.93 -0.42 1.37 16 13 C -0.15 -2.47 5.34 -90.62 -0.48 -2.96 16 14 H 0.10 1.68 8.04 -51.93 -0.42 1.26 16 15 C 0.15 2.27 5.95 -4.04 -0.02 2.25 16 16 N -0.71 -9.89 5.55 -61.29 -0.34 -10.23 16 17 C 0.60 9.09 7.82 -12.39 -0.10 8.99 16 18 O -0.54 -9.62 16.93 5.30 0.09 -9.53 16 19 C -0.02 -0.21 7.13 -82.76 -0.59 -0.80 16 20 C -0.18 -1.92 10.81 -39.37 -0.43 -2.35 16 21 C -0.02 -0.17 10.38 -17.17 -0.18 -0.35 16 22 N -0.27 -2.43 3.13 -53.74 -0.17 -2.60 16 23 C 0.14 0.82 3.87 -66.81 -0.26 0.56 16 24 C -0.14 -0.49 6.36 -25.03 -0.16 -0.65 16 25 C -0.12 -0.31 6.91 -24.70 -0.17 -0.48 16 26 C -0.13 -0.40 6.83 -25.07 -0.17 -0.57 16 27 C -0.14 -0.68 6.59 -25.61 -0.17 -0.85 16 28 N -0.26 -3.07 11.67 33.42 0.39 -2.68 16 29 C -0.16 -3.14 6.77 -89.22 -0.60 -3.75 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 31 C 0.18 4.48 5.70 -2.41 -0.01 4.47 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 37 H 0.41 5.18 8.13 -40.82 -0.33 4.85 16 38 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.18 0.78 6.84 -52.49 -0.36 0.42 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.27 5.86 -51.93 -0.30 -0.03 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 49 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -33.77 404.06 -11.18 -44.95 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.04 Total: 3.07 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -4.21 Total: -3.70 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.08 Total: -57.96 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.77 -11.18 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978223610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.853 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds