Wall clock time and date at job start Wed Apr 1 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46965 * 269.99651 * 3 2 1 5 5 H 1.48493 * 109.47517 * 29.99716 * 3 2 1 6 6 H 1.48506 * 109.47395 * 150.00286 * 3 2 1 7 7 C 1.38815 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99691 * 170.57231 * 7 2 1 9 9 N 1.36935 * 120.00368 * 350.57010 * 7 2 1 10 10 C 1.48149 * 127.83801 * 164.33852 * 9 7 2 11 11 C 1.57692 * 104.67276 * 139.77221 * 10 9 7 12 12 H 1.09001 * 120.32305 * 244.63822 * 11 10 9 13 13 C 1.52996 * 116.10987 * 87.30766 * 11 10 9 14 14 H 1.09005 * 117.40672 * 16.95234 * 13 11 10 15 15 C 1.53000 * 117.44368 * 161.63562 * 13 11 10 16 16 N 1.46499 * 109.47495 * 244.23989 * 15 13 11 17 17 C 1.34774 * 120.00199 * 179.97438 * 16 15 13 18 18 O 1.21572 * 120.00320 * 359.97438 * 17 16 15 19 19 C 1.47711 * 120.00133 * 180.02562 * 17 16 15 20 20 C 1.41503 * 126.52227 * 180.02562 * 19 17 16 21 21 C 1.35358 * 105.50633 * 180.02562 * 20 19 17 22 22 N 1.35036 * 107.23035 * 359.97438 * 21 20 19 23 23 C 1.46499 * 124.89050 * 180.02562 * 22 21 20 24 24 C 1.54270 * 110.03098 * 32.92310 * 23 22 21 25 25 C 1.54962 * 104.16066 * 217.14026 * 24 23 22 26 26 C 1.54889 * 102.77611 * 37.89369 * 25 24 23 27 27 C 1.53875 * 110.02926 * 275.71435 * 23 22 21 28 28 N 1.28474 * 110.22852 * 0.02562 * 22 21 20 29 29 C 1.52998 * 60.55900 * 269.28786 * 13 11 10 30 30 H 1.09002 * 119.53600 * 248.23668 * 29 13 11 31 31 C 1.48143 * 127.83643 * 344.33311 * 9 7 2 32 32 H 0.96996 * 119.99567 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.40412 * 259.19740 * 10 9 7 34 34 H 1.08999 * 110.40731 * 21.51459 * 10 9 7 35 35 H 1.09001 * 109.47625 * 124.23864 * 15 13 11 36 36 H 1.09003 * 109.47294 * 4.24246 * 15 13 11 37 37 H 0.97004 * 119.99497 * 0.02562 * 16 15 13 38 38 H 1.07996 * 127.24278 * 0.04910 * 20 19 17 39 39 H 1.08002 * 126.38826 * 180.02562 * 21 20 19 40 40 H 1.08993 * 110.02106 * 154.31973 * 23 22 21 41 41 H 1.09000 * 110.48970 * 335.79565 * 24 23 22 42 42 H 1.09000 * 110.47781 * 98.43194 * 24 23 22 43 43 H 1.08993 * 110.72160 * 279.57734 * 25 24 23 44 44 H 1.09005 * 110.92022 * 156.29904 * 25 24 23 45 45 H 1.09000 * 110.48426 * 203.40257 * 26 25 24 46 46 H 1.09003 * 110.59695 * 80.81480 * 26 25 24 47 47 H 1.08997 * 110.03336 * 238.56891 * 27 23 22 48 48 H 1.09005 * 110.03247 * 359.94822 * 27 23 22 49 49 H 1.09005 * 110.40435 * 100.80275 * 31 9 7 50 50 H 1.08997 * 110.41072 * 338.37337 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3394 -2.3800 0.1954 10 6 1.8184 -3.7548 -0.0790 11 6 1.2960 -4.6102 1.1384 12 1 2.0013 -5.0726 1.8290 13 6 -0.1130 -5.1898 0.9987 14 1 -0.5439 -5.2255 -0.0019 15 6 -0.4933 -6.3492 1.9218 16 7 -0.7428 -7.5499 1.1203 17 6 -1.0945 -8.7023 1.7243 18 8 -1.2042 -8.7455 2.9343 19 6 -1.3455 -9.9130 0.9163 20 6 -1.7201 -11.1877 1.4032 21 6 -1.8354 -11.9741 0.3076 22 7 -1.5462 -11.2085 -0.7665 23 6 -1.5542 -11.6754 -2.1551 24 6 -2.6391 -12.7561 -2.3429 25 6 -2.0019 -13.7650 -3.3315 26 6 -0.5212 -13.7999 -2.8786 27 6 -0.2082 -12.3386 -2.4959 28 7 -1.2629 -10.0115 -0.3955 29 6 0.0735 -3.8120 1.6374 30 1 -0.1319 -3.6799 2.6997 31 6 -0.0299 -2.5685 0.7283 32 1 -0.4849 0.8400 -0.0004 33 1 1.4043 -4.1212 -1.0183 34 1 2.9077 -3.7787 -0.1096 35 1 -1.3940 -6.0903 2.4783 36 1 0.3221 -6.5409 2.6192 37 1 -0.6541 -7.5157 0.1550 38 1 -1.8806 -11.4729 2.4324 39 1 -2.1087 -13.0189 0.2946 40 1 -1.7396 -10.8391 -2.8289 41 1 -2.8622 -13.2419 -1.3930 42 1 -3.5418 -12.3199 -2.7706 43 1 -2.0839 -13.4044 -4.3568 44 1 -2.4596 -14.7493 -3.2320 45 1 0.1206 -14.1257 -3.6972 46 1 -0.3994 -14.4547 -2.0157 47 1 0.2593 -11.8246 -3.3357 48 1 0.4513 -12.3122 -1.6284 49 1 -0.7327 -2.7496 -0.0850 50 1 -0.3351 -1.6978 1.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978223610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:26 Heat of formation + Delta-G solvation = 77.612513 kcal Electronic energy + Delta-G solvation = -28870.095838 eV Core-core repulsion = 24899.644729 eV Total energy + Delta-G solvation = -3970.451108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.73063 -40.79526 -40.01417 -38.89507 -36.36881 -35.01726 -33.44792 -32.70654 -31.77160 -29.75828 -29.47365 -28.77062 -28.34060 -26.69240 -24.28796 -23.26438 -22.73372 -21.88192 -21.50178 -20.97546 -20.84281 -20.54256 -18.96282 -18.79384 -17.93480 -17.16653 -17.07719 -16.73175 -16.45061 -15.99432 -15.88956 -15.57033 -15.23853 -15.22202 -14.66636 -14.54589 -14.43737 -14.28623 -14.15242 -13.82343 -13.38174 -13.18523 -13.09785 -12.89365 -12.70330 -12.65316 -12.32919 -12.12616 -12.04006 -12.00022 -11.96003 -11.90293 -11.76605 -11.76326 -11.49035 -11.41229 -10.94712 -10.72473 -10.58341 -10.31162 -10.13002 -9.93016 -8.91502 -7.92408 -5.28626 0.51272 1.18435 1.45382 1.45951 1.47817 1.57271 2.09174 2.35342 2.47311 2.75446 3.20751 3.25622 3.49998 3.57981 3.61015 3.70214 3.81925 3.85998 3.89783 4.08036 4.19258 4.25077 4.29976 4.33321 4.38810 4.43408 4.49282 4.56558 4.63010 4.65843 4.70750 4.75110 4.79325 4.85463 4.91187 4.99913 5.01036 5.06194 5.17279 5.20805 5.23701 5.32728 5.35506 5.41798 5.42495 5.44286 5.51791 5.65769 5.89587 6.17109 6.40884 6.90548 7.00278 7.13143 7.67532 8.46400 9.21579 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.001778 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.906086 B =15748.377425 C =16758.836028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.149 3.851 11 C -0.158 4.158 12 H 0.130 0.870 13 C -0.117 4.117 14 H 0.105 0.895 15 C 0.163 3.837 16 N -0.704 5.704 17 C 0.601 3.399 18 O -0.573 6.573 19 C -0.046 4.046 20 C -0.198 4.198 21 C 0.000 4.000 22 N -0.267 5.267 23 C 0.132 3.868 24 C -0.132 4.132 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.134 4.134 28 N -0.276 5.276 29 C -0.174 4.174 30 H 0.115 0.885 31 C 0.190 3.810 32 H 0.250 0.750 33 H 0.029 0.971 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.414 0.586 38 H 0.165 0.835 39 H 0.220 0.780 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.001 0.999 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -34.195 -6.005 35.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.024 3.976 11 C -0.177 4.177 12 H 0.148 0.852 13 C -0.136 4.136 14 H 0.122 0.878 15 C 0.040 3.960 16 N -0.355 5.355 17 C 0.387 3.613 18 O -0.451 6.451 19 C -0.204 4.204 20 C -0.226 4.226 21 C -0.143 4.143 22 N -0.056 5.056 23 C 0.033 3.967 24 C -0.170 4.170 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.172 4.172 28 N -0.113 5.113 29 C -0.194 4.194 30 H 0.132 0.868 31 C 0.064 3.936 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.183 0.817 39 H 0.236 0.764 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.019 0.981 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.937 -33.320 -6.256 34.260 hybrid contribution 0.146 1.117 0.351 1.180 sum -4.791 -32.203 -5.905 33.089 Atomic orbital electron populations 1.70101 1.06548 1.25765 1.57099 1.25765 0.96525 1.01361 1.02108 0.85051 0.77706 0.78769 0.77594 1.21015 1.21889 1.19355 1.19378 0.91396 0.83663 1.42566 0.90158 1.45458 1.14248 1.01173 1.73504 1.21865 0.97664 0.84248 0.93844 1.24651 0.90364 1.01697 1.01023 0.85181 1.22405 0.98628 0.92433 1.00095 0.87750 1.20762 1.01234 0.81718 0.92305 1.45801 1.68774 1.09191 1.11741 1.17169 0.76017 0.81995 0.86111 1.90758 1.54352 1.85267 1.14700 1.21822 1.11815 0.96316 0.90459 1.21978 1.08032 0.91496 1.01142 1.23223 1.05369 1.00754 0.84974 1.46101 1.45485 1.05076 1.08921 1.22727 0.98756 0.99209 0.76034 1.22881 0.96788 0.95079 1.02230 1.22487 0.94518 0.99514 0.98846 1.22382 0.97213 0.94289 1.02003 1.22577 0.94736 0.97671 1.02259 1.73464 1.19134 1.04727 1.13945 1.23879 1.04541 0.91022 0.99990 0.86755 1.20807 0.86058 0.93694 0.93045 0.94106 0.95347 0.92583 0.90941 0.90911 0.74961 0.81722 0.76386 0.87226 0.89016 0.89512 0.90294 0.89157 0.90145 0.90732 0.89627 0.92233 0.98094 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 10.88 21.65 0.24 -57.60 16 2 C -0.06 -3.69 5.39 84.86 0.46 -3.23 16 3 Si 0.98 46.11 29.56 68.60 2.03 48.14 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.24 -13.79 10.35 84.03 0.87 -12.92 16 8 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 9 N -0.62 -32.75 3.38 -681.42 -2.30 -35.06 16 10 C 0.15 6.28 7.10 87.72 0.62 6.90 16 11 C -0.16 -5.49 7.03 -8.70 -0.06 -5.55 16 12 H 0.13 4.00 8.12 -2.39 -0.02 3.98 16 13 C -0.12 -3.64 5.34 -10.80 -0.06 -3.69 16 14 H 0.10 3.29 8.04 -2.38 -0.02 3.28 16 15 C 0.16 4.59 5.95 86.38 0.51 5.11 16 16 N -0.70 -19.05 5.55 -466.10 -2.59 -21.64 16 17 C 0.60 18.04 7.82 86.75 0.68 18.72 16 18 O -0.57 -20.53 16.93 -3.94 -0.07 -20.60 16 19 C -0.05 -1.18 7.13 42.46 0.30 -0.88 16 20 C -0.20 -4.07 10.81 22.41 0.24 -3.83 16 21 C 0.00 -0.01 10.38 83.53 0.87 0.86 16 22 N -0.27 -4.29 3.13 -323.95 -1.02 -5.31 16 23 C 0.13 1.28 3.87 45.72 0.18 1.46 16 24 C -0.13 -0.57 6.36 31.70 0.20 -0.37 16 25 C -0.12 -0.23 6.91 31.91 0.22 -0.01 16 26 C -0.12 -0.46 6.83 31.67 0.22 -0.24 16 27 C -0.13 -1.10 6.59 31.32 0.21 -0.90 16 28 N -0.28 -6.32 11.67 -48.17 -0.56 -6.88 16 29 C -0.17 -6.70 6.77 -9.89 -0.07 -6.77 16 30 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 31 C 0.19 9.54 5.70 86.53 0.49 10.03 16 32 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.06 7.94 -2.39 -0.02 2.04 16 37 H 0.41 10.16 8.13 -92.71 -0.75 9.41 16 38 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.22 1.03 6.84 -2.91 -0.02 1.01 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.26 5.86 -2.39 -0.01 0.24 16 42 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 45 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.72 7.92 -2.38 -0.02 0.70 16 49 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 50 H 0.05 3.05 6.53 -2.39 -0.02 3.03 16 Total: -1.00 -75.32 404.06 1.80 -73.51 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.19 Total: 20.72 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.88 Total: 4.71 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -6.23 Total: -126.48 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.07 Total: -20.60 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -75.32 1.80 -73.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978223610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.125 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds