Wall clock time and date at job start Wed Apr 1 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99921 * 2 1 4 4 H 1.48495 * 109.47408 * 264.99650 * 3 2 1 5 5 H 1.48499 * 109.47305 * 25.00297 * 3 2 1 6 6 H 1.48506 * 109.46883 * 144.99775 * 3 2 1 7 7 C 1.38810 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 185.60766 * 7 2 1 9 9 N 1.36942 * 119.99728 * 5.59909 * 7 2 1 10 10 C 1.46902 * 120.68542 * 214.16008 * 9 7 2 11 11 C 1.52667 * 109.34741 * 235.31256 * 10 9 7 12 12 C 1.53186 * 109.42948 * 303.77503 * 11 10 9 13 13 C 1.52633 * 109.35473 * 58.92632 * 12 11 10 14 14 C 1.53457 * 113.68419 * 74.05613 * 13 12 11 15 15 N 1.47677 * 85.96598 * 91.18112 * 14 13 12 16 16 C 1.34775 * 134.45520 * 204.28689 * 15 14 13 17 17 O 1.21626 * 120.00217 * 174.38234 * 16 15 14 18 18 C 1.47162 * 119.99916 * 354.38467 * 16 15 14 19 19 C 1.38410 * 126.88547 * 4.81180 * 18 16 15 20 20 C 1.39672 * 105.36115 * 180.02562 * 19 18 16 21 21 N 1.30859 * 107.86313 * 359.97438 * 20 19 18 22 22 N 1.28452 * 110.92740 * 359.71711 * 21 20 19 23 23 C 1.46499 * 125.19194 * 180.27428 * 22 21 20 24 24 C 1.53783 * 113.61067 * 44.09652 * 23 22 21 25 25 C 1.53960 * 87.01582 * 220.04531 * 24 23 22 26 26 C 1.53774 * 113.61600 * 306.48691 * 23 22 21 27 27 C 1.47675 * 91.09257 * 24.28369 * 15 14 13 28 28 C 1.47114 * 120.69197 * 34.44485 * 9 7 2 29 29 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.54037 * 355.24618 * 10 9 7 31 31 H 1.09002 * 109.53217 * 115.47724 * 10 9 7 32 32 H 1.09000 * 109.56226 * 183.71999 * 11 10 9 33 33 H 1.08999 * 109.34603 * 63.69322 * 11 10 9 34 34 H 1.09002 * 109.49289 * 298.96379 * 12 11 10 35 35 H 1.08994 * 109.49200 * 178.89018 * 12 11 10 36 36 H 1.09003 * 113.79460 * 205.43992 * 14 13 12 37 37 H 1.08997 * 113.79506 * 336.91997 * 14 13 12 38 38 H 1.08003 * 127.31737 * 0.02562 * 19 18 16 39 39 H 1.07999 * 126.06628 * 180.02562 * 20 19 18 40 40 H 1.09003 * 112.84732 * 175.28827 * 23 22 21 41 41 H 1.08995 * 113.61511 * 334.56029 * 24 23 22 42 42 H 1.08995 * 113.61638 * 105.46987 * 24 23 22 43 43 H 1.09002 * 113.53520 * 270.81241 * 25 24 23 44 44 H 1.08992 * 113.74492 * 139.94379 * 25 24 23 45 45 H 1.09005 * 113.61069 * 254.52602 * 26 23 22 46 46 H 1.08998 * 113.61456 * 25.42957 * 26 23 22 47 47 H 1.08999 * 113.79334 * 221.44891 * 27 15 14 48 48 H 1.09001 * 113.89326 * 89.98807 * 27 15 14 49 49 H 1.09000 * 109.63321 * 248.30675 * 28 9 7 50 50 H 1.08997 * 109.63407 * 8.91607 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9854 -1.3947 5 1 1.3988 2.6808 0.5918 6 1 3.4909 1.4729 0.8031 7 6 2.0102 -1.2021 -0.0005 8 1 3.0864 -1.2044 0.0909 9 7 1.3304 -2.3852 -0.1168 10 6 1.8014 -3.5917 0.5763 11 6 1.9917 -4.7162 -0.4386 12 6 0.6803 -4.9463 -1.1962 13 6 0.2704 -3.6561 -1.9012 14 6 1.1168 -3.3351 -3.1404 15 7 0.1008 -4.0901 -3.9012 16 6 0.1003 -4.7535 -5.0744 17 8 -0.8821 -5.3838 -5.4161 18 6 1.2884 -4.7152 -5.9419 19 6 2.5074 -4.1254 -5.6556 20 6 3.3024 -4.3540 -6.7810 21 7 2.5883 -5.0267 -7.6470 22 7 1.4113 -5.2599 -7.1885 23 6 0.3595 -5.9939 -7.8966 24 6 0.8595 -7.2739 -8.5868 25 6 -0.0645 -6.9050 -9.7617 26 6 0.0629 -5.4432 -9.3014 27 6 -0.9142 -3.8271 -2.8614 28 6 0.1167 -2.4757 -0.9433 29 1 -0.4850 0.8401 0.0004 30 1 2.7512 -3.3823 1.0682 31 1 1.0643 -3.8963 1.3193 32 1 2.2775 -5.6314 0.0800 33 1 2.7748 -4.4376 -1.1436 34 1 -0.0992 -5.2399 -0.4931 35 1 0.8205 -5.7355 -1.9347 36 1 1.1514 -2.2738 -3.3864 37 1 2.1005 -3.8045 -3.1347 38 1 2.7848 -3.6000 -4.7537 39 1 4.3253 -4.0334 -6.9126 40 1 -0.5330 -6.1453 -7.2895 41 1 1.9193 -7.2479 -8.8401 42 1 0.5685 -8.1896 -8.0722 43 1 -1.0731 -7.3068 -9.6651 44 1 0.3744 -7.0940 -10.7413 45 1 -0.8702 -4.8832 -9.3627 46 1 0.9046 -4.9158 -9.7503 47 1 -1.5440 -4.6872 -2.6340 48 1 -1.4849 -2.9125 -3.0228 49 1 -0.7513 -2.6338 -0.3033 50 1 -0.0077 -1.5550 -1.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981772458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:04 Heat of formation + Delta-G solvation = 125.447109 kcal Electronic energy + Delta-G solvation = -31200.435279 eV Core-core repulsion = 27232.058434 eV Total energy + Delta-G solvation = -3968.376845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.59176 -40.41606 -38.65901 -38.09271 -35.81859 -32.92525 -31.89860 -31.41279 -30.12294 -29.75979 -26.26892 -26.05137 -26.01102 -25.46561 -25.40241 -22.63587 -22.28009 -21.74568 -20.59642 -19.81821 -19.07493 -17.96202 -17.39838 -16.82038 -16.41045 -16.04940 -15.77008 -15.47786 -15.33202 -14.68784 -14.24067 -14.03632 -13.91010 -13.75003 -13.52185 -13.39322 -12.97724 -12.91790 -12.82603 -12.58777 -12.49068 -12.34757 -11.88062 -11.70361 -11.48149 -11.27804 -11.04206 -10.93836 -10.89896 -10.86152 -10.71839 -10.53840 -10.30751 -10.17039 -10.01228 -9.80890 -9.59029 -9.46318 -9.19223 -8.98659 -8.55705 -8.46273 -6.63576 -5.86667 -3.37016 1.29428 2.29372 2.61863 3.05698 3.31004 3.32991 3.40489 3.40668 4.09050 4.23505 4.34577 4.42123 4.48631 4.57122 4.74022 4.78560 5.10525 5.16007 5.28144 5.33242 5.36551 5.43255 5.43929 5.50976 5.53120 5.57021 5.60168 5.66261 5.69097 5.70240 5.73451 5.84354 5.86673 5.94405 6.02997 6.05417 6.10681 6.21490 6.36150 6.48976 6.53385 6.57869 6.71301 6.75950 6.81888 6.95856 7.20221 7.53100 7.73434 7.81346 8.02824 8.20715 8.41650 9.15705 9.75318 10.35968 11.21967 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002885 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.603806 B = 9702.244980 C =10206.156950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.083 4.083 13 C -0.112 4.112 14 C 0.119 3.881 15 N -0.624 5.624 16 C 0.608 3.392 17 O -0.558 6.558 18 C -0.031 4.031 19 C -0.189 4.189 20 C -0.007 4.007 21 N -0.280 5.280 22 N -0.248 5.248 23 C 0.110 3.890 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.142 4.142 27 C 0.121 3.879 28 C 0.193 3.807 29 H 0.255 0.745 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.153 0.847 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.027 0.973 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -11.522 -13.221 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.121 4.121 13 C -0.114 4.114 14 C -0.003 4.003 15 N -0.357 5.357 16 C 0.397 3.603 17 O -0.439 6.439 18 C -0.159 4.159 19 C -0.218 4.218 20 C -0.183 4.183 21 N -0.112 5.112 22 N -0.036 5.036 23 C 0.009 3.991 24 C -0.178 4.178 25 C -0.174 4.174 26 C -0.180 4.180 27 C -0.001 4.001 28 C 0.066 3.934 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.182 0.818 39 H 0.202 0.798 40 H 0.171 0.829 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.045 0.955 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.801 -12.343 -14.676 19.193 hybrid contribution 0.507 1.389 0.773 1.668 sum 1.308 -10.954 -13.903 17.748 Atomic orbital electron populations 1.69916 1.05251 1.25660 1.54039 1.25250 0.95452 0.98345 0.99938 0.86316 0.79066 0.83540 0.77843 1.21295 1.21666 1.20451 1.19118 0.90148 0.83249 1.45822 0.91863 1.43936 1.29195 1.05792 1.52280 1.20815 0.97678 0.87221 0.92464 1.21944 0.96799 0.99055 0.99484 1.21100 0.98019 0.94725 0.98247 1.22869 0.93683 0.99712 0.95171 1.23489 0.93070 0.96585 0.87122 1.49914 1.16832 1.50855 1.18069 1.16532 0.85023 0.79520 0.79250 1.90680 1.35839 1.44386 1.72966 1.21428 0.97760 1.06611 0.90099 1.22609 0.92306 1.05253 1.01647 1.23565 1.00889 1.02153 0.91679 1.73036 0.92881 1.18426 1.26853 1.45759 1.09462 1.37679 1.10680 1.23853 0.89599 0.92479 0.93143 1.23361 1.01389 0.96481 0.96579 1.22711 1.00309 0.95759 0.98593 1.23352 1.03074 0.97617 0.93972 1.23323 0.93016 1.01054 0.82730 1.20693 0.88791 0.93256 0.90649 0.93464 0.92816 0.96434 0.92980 0.92421 0.92013 0.93378 0.88806 0.90079 0.81798 0.79790 0.82947 0.88500 0.90445 0.89449 0.90253 0.90405 0.88762 0.90354 0.89099 0.95525 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 11.06 55.49 0.61 -23.77 16 2 C 0.01 0.24 5.14 -17.43 -0.09 0.15 16 3 Si 0.90 20.49 29.56 -169.99 -5.02 15.46 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.25 -6.36 9.56 -15.06 -0.14 -6.51 16 8 H 0.06 1.58 7.83 -52.49 -0.41 1.16 16 9 N -0.59 -13.26 2.99 -172.75 -0.52 -13.78 16 10 C 0.14 2.77 6.43 -3.99 -0.03 2.74 16 11 C -0.13 -2.11 5.99 -26.81 -0.16 -2.27 16 12 C -0.08 -1.29 5.02 -26.82 -0.13 -1.43 16 13 C -0.11 -1.85 0.87 -154.43 -0.13 -1.98 16 14 C 0.12 1.86 6.06 -3.17 -0.02 1.84 16 15 N -0.62 -9.90 3.45 -181.84 -0.63 -10.52 16 16 C 0.61 10.22 8.02 -12.64 -0.10 10.12 16 17 O -0.56 -10.32 15.20 5.25 0.08 -10.24 16 18 C -0.03 -0.48 6.96 -82.06 -0.57 -1.05 16 19 C -0.19 -2.62 10.09 -38.98 -0.39 -3.01 16 20 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 21 N -0.28 -3.90 11.14 30.59 0.34 -3.56 16 22 N -0.25 -3.58 3.46 -49.91 -0.17 -3.75 16 23 C 0.11 1.35 4.45 -67.12 -0.30 1.05 16 24 C -0.14 -1.38 7.77 -25.82 -0.20 -1.58 16 25 C -0.14 -1.08 8.09 -25.82 -0.21 -1.29 16 26 C -0.14 -1.43 7.80 -25.92 -0.20 -1.63 16 27 C 0.12 1.87 7.98 -3.18 -0.03 1.85 16 28 C 0.19 4.02 4.34 -3.81 -0.02 4.00 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.92 7.37 -51.93 -0.38 0.54 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 36 H 0.09 1.54 7.97 -51.93 -0.41 1.13 16 37 H 0.08 1.20 5.73 -51.93 -0.30 0.90 16 38 H 0.16 2.09 5.34 -52.48 -0.28 1.81 16 39 H 0.19 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.15 2.09 5.62 -51.93 -0.29 1.80 16 41 H 0.10 1.01 7.78 -51.93 -0.40 0.61 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 47 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 48 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 2.11 6.17 -51.93 -0.32 1.79 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -29.16 390.22 -10.19 -39.35 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.83 Total: 4.21 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.94 Total: 0.72 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.36 Total: -55.38 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.16 -10.19 -39.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981772458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.798 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds