Wall clock time and date at job start Wed Apr 1 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99921 * 2 1 4 4 H 1.48495 * 109.47408 * 264.99650 * 3 2 1 5 5 H 1.48499 * 109.47305 * 25.00297 * 3 2 1 6 6 H 1.48506 * 109.46883 * 144.99775 * 3 2 1 7 7 C 1.38810 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 185.60766 * 7 2 1 9 9 N 1.36942 * 119.99728 * 5.59909 * 7 2 1 10 10 C 1.46902 * 120.68542 * 214.16008 * 9 7 2 11 11 C 1.52667 * 109.34741 * 235.31256 * 10 9 7 12 12 C 1.53186 * 109.42948 * 303.77503 * 11 10 9 13 13 C 1.52633 * 109.35473 * 58.92632 * 12 11 10 14 14 C 1.53457 * 113.68419 * 74.05613 * 13 12 11 15 15 N 1.47677 * 85.96598 * 91.18112 * 14 13 12 16 16 C 1.34775 * 134.45520 * 204.28689 * 15 14 13 17 17 O 1.21626 * 120.00217 * 174.38234 * 16 15 14 18 18 C 1.47162 * 119.99916 * 354.38467 * 16 15 14 19 19 C 1.38410 * 126.88547 * 4.81180 * 18 16 15 20 20 C 1.39672 * 105.36115 * 180.02562 * 19 18 16 21 21 N 1.30859 * 107.86313 * 359.97438 * 20 19 18 22 22 N 1.28452 * 110.92740 * 359.71711 * 21 20 19 23 23 C 1.46499 * 125.19194 * 180.27428 * 22 21 20 24 24 C 1.53783 * 113.61067 * 44.09652 * 23 22 21 25 25 C 1.53960 * 87.01582 * 220.04531 * 24 23 22 26 26 C 1.53774 * 113.61600 * 306.48691 * 23 22 21 27 27 C 1.47675 * 91.09257 * 24.28369 * 15 14 13 28 28 C 1.47114 * 120.69197 * 34.44485 * 9 7 2 29 29 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.54037 * 355.24618 * 10 9 7 31 31 H 1.09002 * 109.53217 * 115.47724 * 10 9 7 32 32 H 1.09000 * 109.56226 * 183.71999 * 11 10 9 33 33 H 1.08999 * 109.34603 * 63.69322 * 11 10 9 34 34 H 1.09002 * 109.49289 * 298.96379 * 12 11 10 35 35 H 1.08994 * 109.49200 * 178.89018 * 12 11 10 36 36 H 1.09003 * 113.79460 * 205.43992 * 14 13 12 37 37 H 1.08997 * 113.79506 * 336.91997 * 14 13 12 38 38 H 1.08003 * 127.31737 * 0.02562 * 19 18 16 39 39 H 1.07999 * 126.06628 * 180.02562 * 20 19 18 40 40 H 1.09003 * 112.84732 * 175.28827 * 23 22 21 41 41 H 1.08995 * 113.61511 * 334.56029 * 24 23 22 42 42 H 1.08995 * 113.61638 * 105.46987 * 24 23 22 43 43 H 1.09002 * 113.53520 * 270.81241 * 25 24 23 44 44 H 1.08992 * 113.74492 * 139.94379 * 25 24 23 45 45 H 1.09005 * 113.61069 * 254.52602 * 26 23 22 46 46 H 1.08998 * 113.61456 * 25.42957 * 26 23 22 47 47 H 1.08999 * 113.79334 * 221.44891 * 27 15 14 48 48 H 1.09001 * 113.89326 * 89.98807 * 27 15 14 49 49 H 1.09000 * 109.63321 * 248.30675 * 28 9 7 50 50 H 1.08997 * 109.63407 * 8.91607 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9854 -1.3947 5 1 1.3988 2.6808 0.5918 6 1 3.4909 1.4729 0.8031 7 6 2.0102 -1.2021 -0.0005 8 1 3.0864 -1.2044 0.0909 9 7 1.3304 -2.3852 -0.1168 10 6 1.8014 -3.5917 0.5763 11 6 1.9917 -4.7162 -0.4386 12 6 0.6803 -4.9463 -1.1962 13 6 0.2704 -3.6561 -1.9012 14 6 1.1168 -3.3351 -3.1404 15 7 0.1008 -4.0901 -3.9012 16 6 0.1003 -4.7535 -5.0744 17 8 -0.8821 -5.3838 -5.4161 18 6 1.2884 -4.7152 -5.9419 19 6 2.5074 -4.1254 -5.6556 20 6 3.3024 -4.3540 -6.7810 21 7 2.5883 -5.0267 -7.6470 22 7 1.4113 -5.2599 -7.1885 23 6 0.3595 -5.9939 -7.8966 24 6 0.8595 -7.2739 -8.5868 25 6 -0.0645 -6.9050 -9.7617 26 6 0.0629 -5.4432 -9.3014 27 6 -0.9142 -3.8271 -2.8614 28 6 0.1167 -2.4757 -0.9433 29 1 -0.4850 0.8401 0.0004 30 1 2.7512 -3.3823 1.0682 31 1 1.0643 -3.8963 1.3193 32 1 2.2775 -5.6314 0.0800 33 1 2.7748 -4.4376 -1.1436 34 1 -0.0992 -5.2399 -0.4931 35 1 0.8205 -5.7355 -1.9347 36 1 1.1514 -2.2738 -3.3864 37 1 2.1005 -3.8045 -3.1347 38 1 2.7848 -3.6000 -4.7537 39 1 4.3253 -4.0334 -6.9126 40 1 -0.5330 -6.1453 -7.2895 41 1 1.9193 -7.2479 -8.8401 42 1 0.5685 -8.1896 -8.0722 43 1 -1.0731 -7.3068 -9.6651 44 1 0.3744 -7.0940 -10.7413 45 1 -0.8702 -4.8832 -9.3627 46 1 0.9046 -4.9158 -9.7503 47 1 -1.5440 -4.6872 -2.6340 48 1 -1.4849 -2.9125 -3.0228 49 1 -0.7513 -2.6338 -0.3033 50 1 -0.0077 -1.5550 -1.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981772458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:03 Heat of formation + Delta-G solvation = 110.545904 kcal Electronic energy + Delta-G solvation = -31201.081444 eV Core-core repulsion = 27232.058434 eV Total energy + Delta-G solvation = -3969.023009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.63870 -41.75507 -39.51721 -39.41914 -37.37207 -34.61776 -32.95167 -32.59724 -31.81819 -31.09074 -27.63625 -27.34004 -27.15361 -26.79248 -26.38734 -23.98763 -23.74080 -22.75477 -21.98371 -20.91430 -20.07302 -19.36041 -18.58517 -18.56995 -17.65161 -17.25560 -16.77090 -16.62985 -16.50050 -16.32776 -15.70015 -15.29907 -15.22400 -14.98686 -14.95268 -14.63366 -14.28079 -14.11417 -14.03905 -13.71819 -13.63151 -13.38460 -13.30487 -13.13572 -12.76013 -12.69310 -12.56748 -12.25547 -12.23227 -12.00636 -11.95351 -11.79751 -11.67250 -11.63396 -11.38808 -11.27908 -11.04372 -10.87983 -10.48239 -10.31476 -10.00823 -9.75254 -8.48605 -7.80748 -5.32806 0.14167 1.21073 1.51852 1.53957 1.59571 1.60643 1.88160 2.08494 2.55539 3.13289 3.27340 3.32092 3.43799 3.44646 3.68116 3.72775 3.83703 3.88483 3.91925 4.07206 4.09060 4.32867 4.39994 4.40558 4.46249 4.48821 4.57162 4.61492 4.64786 4.68456 4.68956 4.73965 4.80634 4.83371 4.86944 4.92803 4.96151 5.05927 5.08127 5.19675 5.29110 5.31581 5.33126 5.46525 5.54908 5.61034 5.73486 5.74661 5.79931 6.49916 6.51771 6.83726 7.06326 7.24848 7.92428 8.47591 9.25126 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002885 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.603806 B = 9702.244980 C =10206.156950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.041 4.041 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.606 5.606 10 C 0.140 3.860 11 C -0.122 4.122 12 C -0.078 4.078 13 C -0.104 4.104 14 C 0.128 3.872 15 N -0.621 5.621 16 C 0.606 3.394 17 O -0.580 6.580 18 C -0.059 4.059 19 C -0.187 4.187 20 C -0.006 4.006 21 N -0.286 5.286 22 N -0.251 5.251 23 C 0.090 3.910 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.139 4.139 27 C 0.122 3.878 28 C 0.206 3.794 29 H 0.249 0.751 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.218 0.782 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.001 0.999 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -12.880 -14.444 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.237 4.237 3 Si 0.788 3.212 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.160 4.160 12 C -0.115 4.115 13 C -0.106 4.106 14 C 0.006 3.994 15 N -0.353 5.353 16 C 0.396 3.604 17 O -0.462 6.462 18 C -0.186 4.186 19 C -0.216 4.216 20 C -0.181 4.181 21 N -0.118 5.118 22 N -0.039 5.039 23 C -0.010 4.010 24 C -0.172 4.172 25 C -0.157 4.157 26 C -0.178 4.178 27 C 0.000 4.000 28 C 0.080 3.920 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.190 0.810 39 H 0.235 0.765 40 H 0.153 0.847 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.019 0.981 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.399 -13.727 -15.900 21.142 hybrid contribution 0.026 1.794 1.193 2.155 sum 2.425 -11.933 -14.707 19.094 Atomic orbital electron populations 1.70076 1.06440 1.25649 1.55792 1.25873 0.96074 1.01049 1.00664 0.85412 0.77954 0.80059 0.77747 1.20970 1.22711 1.19669 1.19391 0.90462 0.84310 1.44277 0.91697 1.44178 1.29263 1.06242 1.53214 1.20950 0.97243 0.87054 0.93246 1.21815 0.96883 0.98687 0.98661 1.21071 0.98035 0.94017 0.98402 1.22644 0.94803 0.98635 0.94546 1.23380 0.93567 0.96183 0.86251 1.49837 1.16809 1.50634 1.18023 1.16740 0.85275 0.79082 0.79318 1.90666 1.36796 1.45352 1.73433 1.21423 0.97915 1.08415 0.90887 1.22792 0.91838 1.04652 1.02289 1.24141 1.02036 1.01196 0.90751 1.73043 0.92852 1.18692 1.27227 1.45998 1.09886 1.37598 1.10426 1.24077 0.89070 0.94215 0.93596 1.23340 1.01431 0.95467 0.97006 1.22702 1.00697 0.93627 0.98650 1.23341 1.02808 0.99040 0.92564 1.23307 0.92878 1.01465 0.82378 1.20356 0.87487 0.93738 0.90444 0.94208 0.92856 0.96981 0.90166 0.92191 0.91730 0.92167 0.89856 0.88587 0.80958 0.76527 0.84706 0.89004 0.89892 0.88148 0.88461 0.90286 0.89370 0.89386 0.89286 0.98126 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.73 11.06 21.65 0.24 -51.49 16 2 C -0.04 -2.12 5.14 84.86 0.44 -1.68 16 3 Si 0.96 42.44 29.56 68.60 2.03 44.47 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.25 -12.75 9.56 84.03 0.80 -11.95 16 8 H 0.07 3.19 7.83 -2.91 -0.02 3.17 16 9 N -0.61 -27.30 2.99 -700.45 -2.10 -29.39 16 10 C 0.14 5.23 6.43 86.19 0.55 5.78 16 11 C -0.12 -3.53 5.99 30.55 0.18 -3.35 16 12 C -0.08 -2.26 5.02 30.53 0.15 -2.10 16 13 C -0.10 -3.38 0.87 -52.04 -0.05 -3.42 16 14 C 0.13 3.89 6.06 86.30 0.52 4.41 16 15 N -0.62 -19.32 3.45 -847.47 -2.92 -22.25 16 16 C 0.61 20.15 8.02 86.59 0.69 20.84 16 17 O -0.58 -21.50 15.20 -4.11 -0.06 -21.56 16 18 C -0.06 -1.77 6.96 40.79 0.28 -1.49 16 19 C -0.19 -4.86 10.09 22.66 0.23 -4.63 16 20 C -0.01 -0.15 12.03 85.18 1.02 0.88 16 21 N -0.29 -7.52 11.14 -57.14 -0.64 -8.15 16 22 N -0.25 -7.04 3.46 -311.81 -1.08 -8.12 16 23 C 0.09 2.17 4.45 45.52 0.20 2.38 16 24 C -0.13 -2.45 7.77 31.18 0.24 -2.21 16 25 C -0.12 -1.64 8.09 31.18 0.25 -1.39 16 26 C -0.14 -2.65 7.80 31.12 0.24 -2.41 16 27 C 0.12 3.76 7.98 86.30 0.69 4.45 16 28 C 0.21 8.78 4.34 86.19 0.37 9.15 16 29 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.74 7.37 -2.39 -0.02 1.72 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.66 8.02 -2.39 -0.02 1.64 16 36 H 0.08 2.74 7.97 -2.39 -0.02 2.72 16 37 H 0.10 2.65 5.73 -2.39 -0.01 2.63 16 38 H 0.17 4.06 5.34 -2.91 -0.02 4.04 16 39 H 0.22 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.14 3.73 5.62 -2.39 -0.01 3.72 16 41 H 0.09 1.78 7.78 -2.39 -0.02 1.76 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 47 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 48 H 0.09 2.77 8.09 -2.39 -0.02 2.75 16 49 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.06 2.93 6.17 -2.39 -0.01 2.92 16 Total: -1.00 -63.27 390.22 3.25 -60.02 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.94 Total: 23.21 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 6.84 Total: 13.26 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.50 Total: -119.41 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.27 3.25 -60.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981772458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.568 kcal (2) G-P(sol) polarization free energy of solvation -63.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds