Wall clock time and date at job start Wed Apr 1 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48507 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47294 * 300.00280 * 3 2 1 6 6 H 1.48496 * 109.47102 * 60.00417 * 3 2 1 7 7 C 1.38813 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99775 * 169.84611 * 7 2 1 9 9 N 1.36933 * 120.00098 * 349.84045 * 7 2 1 10 10 C 1.46902 * 120.70252 * 149.02729 * 9 7 2 11 11 C 1.53149 * 109.10925 * 124.57290 * 10 9 7 12 12 C 1.53202 * 109.35146 * 56.51973 * 11 10 9 13 13 C 1.52516 * 109.35707 * 301.10192 * 12 11 10 14 14 C 1.52911 * 114.18378 * 284.26101 * 13 12 11 15 15 N 1.47163 * 87.84216 * 220.43766 * 14 13 12 16 16 C 1.34783 * 135.99578 * 206.62523 * 15 14 13 17 17 O 1.21282 * 119.99948 * 4.87574 * 16 15 14 18 18 C 1.50697 * 119.99914 * 184.87514 * 16 15 14 19 19 H 1.09001 * 109.75821 * 326.97610 * 18 16 15 20 20 C 1.53441 * 109.72157 * 206.33566 * 18 16 15 21 21 C 1.53154 * 109.23770 * 191.74365 * 20 18 16 22 22 C 1.53352 * 109.49607 * 69.40121 * 21 20 18 23 23 N 1.46590 * 108.83360 * 309.46997 * 22 21 20 24 24 N 1.39652 * 127.54534 * 197.33315 * 23 22 21 25 25 C 1.31028 * 108.12301 * 179.88282 * 24 23 22 26 26 C 1.40058 * 108.25655 * 0.02773 * 25 24 23 27 27 C 1.34749 * 107.79744 * 0.02634 * 26 25 24 28 28 C 1.47179 * 88.01099 * 26.88692 * 15 14 13 29 29 C 1.47144 * 120.70190 * 329.00616 * 9 7 2 30 30 H 0.97004 * 119.99892 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.53475 * 244.46588 * 10 9 7 32 32 H 1.09001 * 109.52748 * 4.68842 * 10 9 7 33 33 H 1.08998 * 109.48629 * 176.48140 * 11 10 9 34 34 H 1.09000 * 109.48837 * 296.53303 * 11 10 9 35 35 H 1.08997 * 109.48959 * 181.13814 * 12 11 10 36 36 H 1.08997 * 109.48827 * 61.06356 * 12 11 10 37 37 H 1.09000 * 113.48816 * 105.69269 * 14 13 12 38 38 H 1.09003 * 113.49228 * 335.18472 * 14 13 12 39 39 H 1.08999 * 109.51961 * 311.68545 * 20 18 16 40 40 H 1.08995 * 109.51618 * 71.80065 * 20 18 16 41 41 H 1.09001 * 109.45595 * 189.49239 * 21 20 18 42 42 H 1.09004 * 109.45382 * 309.43593 * 21 20 18 43 43 H 1.09002 * 109.56052 * 189.67092 * 22 21 20 44 44 H 1.09000 * 109.57263 * 69.28406 * 22 21 20 45 45 H 1.07999 * 125.86939 * 180.02562 * 25 24 23 46 46 H 1.07996 * 126.10138 * 180.02562 * 26 25 24 47 47 H 1.08996 * 113.49619 * 87.85513 * 28 15 14 48 48 H 1.08999 * 113.49079 * 218.37237 * 28 15 14 49 49 H 1.08996 * 109.64368 * 111.56194 * 29 9 7 50 50 H 1.09008 * 109.63417 * 350.94619 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0775 -1.2095 -0.1654 9 7 1.3416 -2.3788 0.2081 10 6 1.8066 -3.6261 -0.4132 11 6 2.0276 -4.6778 0.6779 12 6 0.7311 -4.8652 1.4724 13 6 0.3199 -3.5329 2.0905 14 6 1.1468 -3.1269 3.3109 15 7 -0.1023 -2.6574 3.9316 16 6 -0.4390 -1.7355 4.8552 17 8 0.4083 -0.9987 5.3137 18 6 -1.8684 -1.6200 5.3183 19 1 -2.5426 -1.8631 4.4970 20 6 -2.1409 -0.1910 5.8062 21 6 -3.4850 -0.1557 6.5394 22 6 -3.3659 -0.9196 7.8637 23 7 -2.7772 -2.2359 7.5995 24 7 -2.7951 -3.3584 8.4301 25 6 -2.1596 -4.3277 7.8190 26 6 -1.7172 -3.8493 6.5792 27 6 -2.1082 -2.5643 6.4703 28 6 -0.8218 -3.6409 3.1062 29 6 0.1424 -2.4207 1.0598 30 1 -0.4850 0.8401 0.0004 31 1 1.0560 -3.9842 -1.1178 32 1 2.7439 -3.4439 -0.9389 33 1 2.3126 -5.6242 0.2184 34 1 2.8204 -4.3454 1.3481 35 1 0.8916 -5.5986 2.2626 36 1 -0.0567 -5.2152 0.8053 37 1 1.8581 -2.3266 3.1070 38 1 1.5991 -3.9719 3.8300 39 1 -1.3471 0.1194 6.4857 40 1 -2.1741 0.4853 4.9520 41 1 -3.7625 0.8793 6.7392 42 1 -4.2495 -0.6229 5.9186 43 1 -4.3553 -1.0436 8.3038 44 1 -2.7259 -0.3642 8.5494 45 1 -2.0037 -5.3242 8.2050 46 1 -1.1619 -4.4101 5.8421 47 1 -0.8990 -4.6242 3.5702 48 1 -1.7770 -3.2757 2.7291 49 1 -0.7353 -2.6258 0.4470 50 1 0.0217 -1.4648 1.5696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981852898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:06 Heat of formation + Delta-G solvation = 100.212238 kcal Electronic energy + Delta-G solvation = -31821.289464 eV Core-core repulsion = 27851.818354 eV Total energy + Delta-G solvation = -3969.471111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74105 -40.41781 -38.37775 -36.35126 -35.73829 -33.03109 -32.74459 -30.58846 -30.28497 -29.68420 -28.38478 -26.42602 -25.71168 -25.38124 -24.32505 -22.38363 -22.25619 -21.28080 -20.79802 -19.49965 -18.70095 -17.88694 -17.13076 -16.78283 -16.65504 -15.89284 -15.27385 -15.14791 -14.86038 -14.69985 -14.43978 -14.08914 -13.93791 -13.72397 -13.57985 -13.42970 -13.14846 -12.92994 -12.77083 -12.48364 -12.26440 -12.16378 -11.97758 -11.59443 -11.54367 -11.28622 -11.27769 -11.14309 -10.89895 -10.78640 -10.71963 -10.45841 -10.24875 -10.07313 -9.92099 -9.86734 -9.50162 -9.44749 -9.16452 -8.59365 -8.50312 -8.31302 -6.65126 -5.81296 -3.27620 1.73985 2.31451 2.73157 2.90471 3.13656 3.37944 3.46264 3.46933 4.17070 4.35969 4.42495 4.46787 4.47625 4.70439 4.77393 4.90613 4.98375 5.11370 5.25076 5.27583 5.35826 5.41791 5.45860 5.47611 5.53804 5.57858 5.63864 5.67586 5.68527 5.76121 5.82323 5.83703 5.94884 6.03140 6.06686 6.15206 6.21561 6.29622 6.41124 6.50414 6.58073 6.59267 6.75232 6.83370 6.86361 6.97424 7.27820 7.62325 7.63673 7.78979 8.08024 8.41639 8.45011 9.20103 9.81834 10.39177 11.27512 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003802 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.480192 B = 7363.209956 C = 8965.676582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.091 4.091 13 C -0.111 4.111 14 C 0.119 3.881 15 N -0.631 5.631 16 C 0.558 3.442 17 O -0.537 6.537 18 C -0.040 4.040 19 H 0.113 0.887 20 C -0.115 4.115 21 C -0.134 4.134 22 C 0.131 3.869 23 N -0.365 5.365 24 N -0.296 5.296 25 C 0.045 3.955 26 C -0.263 4.263 27 C 0.102 3.898 28 C 0.103 3.897 29 C 0.201 3.799 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.183 0.817 46 H 0.146 0.854 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.024 0.976 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 -8.194 10.793 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.130 4.130 13 C -0.113 4.113 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.346 3.654 17 O -0.413 6.413 18 C -0.063 4.063 19 H 0.130 0.870 20 C -0.153 4.153 21 C -0.172 4.172 22 C 0.010 3.990 23 N -0.149 5.149 24 N -0.117 5.117 25 C -0.141 4.141 26 C -0.292 4.292 27 C -0.026 4.026 28 C -0.020 4.020 29 C 0.075 3.925 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.200 0.800 46 H 0.164 0.836 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.041 0.959 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.165 -6.974 12.300 16.328 hybrid contribution 0.777 0.469 -0.658 1.121 sum -7.388 -6.505 11.641 15.246 Atomic orbital electron populations 1.69954 1.05228 1.25314 1.54400 1.25108 0.95392 0.98299 1.00251 0.86246 0.79441 0.84032 0.77251 1.20193 1.21640 1.21522 1.19184 0.90785 0.83762 1.44383 0.91760 1.43978 1.30881 1.03640 1.52669 1.20904 0.97602 0.87103 0.92650 1.22024 0.96974 0.99008 0.99338 1.21215 0.98186 0.94749 0.98811 1.22784 0.94365 0.99061 0.95121 1.22952 0.88913 0.98397 0.89996 1.49451 1.12514 1.35105 1.39417 1.19349 0.89166 0.79548 0.77339 1.90699 1.51468 1.42788 1.56375 1.20022 0.96097 0.95040 0.95124 0.86954 1.21616 0.97321 0.94275 1.02108 1.21994 0.98614 1.01527 0.95093 1.21860 0.99364 0.78859 0.98878 1.48660 1.43149 1.10470 1.12592 1.77253 1.24291 0.93036 1.17105 1.23878 0.97566 0.98817 0.93804 1.21096 1.12316 0.94825 1.00958 1.20423 0.97376 0.95063 0.89711 1.23204 0.97965 0.91545 0.89308 1.20462 0.88439 0.94871 0.88694 0.93733 0.96405 0.92872 0.93013 0.92339 0.93065 0.91983 0.89653 0.91020 0.89557 0.89360 0.88426 0.90415 0.88940 0.89778 0.79972 0.83604 0.90244 0.90539 0.95850 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.05 55.49 0.61 -24.91 16 2 C 0.01 0.22 5.06 -17.43 -0.09 0.14 16 3 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.25 -6.72 9.59 -15.06 -0.14 -6.86 16 8 H 0.06 1.71 7.85 -52.48 -0.41 1.30 16 9 N -0.59 -13.94 3.00 -172.51 -0.52 -14.46 16 10 C 0.14 2.81 6.45 -3.75 -0.02 2.79 16 11 C -0.13 -2.09 6.03 -26.55 -0.16 -2.25 16 12 C -0.09 -1.30 5.11 -26.87 -0.14 -1.44 16 13 C -0.11 -1.83 0.96 -154.87 -0.15 -1.98 16 14 C 0.12 2.06 7.53 -8.19 -0.06 2.00 16 15 N -0.63 -10.54 3.48 -184.95 -0.64 -11.18 16 16 C 0.56 9.94 6.83 -10.98 -0.08 9.86 16 17 O -0.54 -11.70 16.68 5.56 0.09 -11.61 16 18 C -0.04 -0.56 2.77 -92.61 -0.26 -0.81 16 19 H 0.11 1.40 7.94 -51.93 -0.41 0.99 16 20 C -0.12 -1.42 5.05 -26.42 -0.13 -1.56 16 21 C -0.13 -1.17 5.94 -26.47 -0.16 -1.32 16 22 C 0.13 1.27 7.28 -3.81 -0.03 1.25 16 23 N -0.37 -4.83 4.04 -56.89 -0.23 -5.06 16 24 N -0.30 -4.15 12.62 30.70 0.39 -3.76 16 25 C 0.04 0.55 12.03 -17.21 -0.21 0.35 16 26 C -0.26 -3.48 10.30 -40.14 -0.41 -3.89 16 27 C 0.10 1.41 6.12 -82.22 -0.50 0.91 16 28 C 0.10 1.43 7.33 -8.03 -0.06 1.37 16 29 C 0.20 4.42 4.37 -3.86 -0.02 4.41 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.96 8.02 -51.93 -0.42 0.54 16 35 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.79 8.11 -51.93 -0.42 1.37 16 38 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 39 H 0.09 1.21 7.43 -51.93 -0.39 0.83 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.15 1.79 7.54 -52.49 -0.40 1.40 16 47 H 0.08 0.88 7.72 -51.93 -0.40 0.48 16 48 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.09 2.38 6.02 -51.92 -0.31 2.07 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.33 392.92 -10.20 -43.53 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.19 Total: 1.70 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.61 Total: 2.95 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.39 Total: -59.38 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.33 -10.20 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981852898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.743 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds