Wall clock time and date at job start Wed Apr 1 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48507 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47294 * 300.00280 * 3 2 1 6 6 H 1.48496 * 109.47102 * 60.00417 * 3 2 1 7 7 C 1.38813 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99775 * 169.84611 * 7 2 1 9 9 N 1.36933 * 120.00098 * 349.84045 * 7 2 1 10 10 C 1.46902 * 120.70252 * 149.02729 * 9 7 2 11 11 C 1.53149 * 109.10925 * 124.57290 * 10 9 7 12 12 C 1.53202 * 109.35146 * 56.51973 * 11 10 9 13 13 C 1.52516 * 109.35707 * 301.10192 * 12 11 10 14 14 C 1.52911 * 114.18378 * 284.26101 * 13 12 11 15 15 N 1.47163 * 87.84216 * 220.43766 * 14 13 12 16 16 C 1.34783 * 135.99578 * 206.62523 * 15 14 13 17 17 O 1.21282 * 119.99948 * 4.87574 * 16 15 14 18 18 C 1.50697 * 119.99914 * 184.87514 * 16 15 14 19 19 H 1.09001 * 109.75821 * 326.97610 * 18 16 15 20 20 C 1.53441 * 109.72157 * 206.33566 * 18 16 15 21 21 C 1.53154 * 109.23770 * 191.74365 * 20 18 16 22 22 C 1.53352 * 109.49607 * 69.40121 * 21 20 18 23 23 N 1.46590 * 108.83360 * 309.46997 * 22 21 20 24 24 N 1.39652 * 127.54534 * 197.33315 * 23 22 21 25 25 C 1.31028 * 108.12301 * 179.88282 * 24 23 22 26 26 C 1.40058 * 108.25655 * 0.02773 * 25 24 23 27 27 C 1.34749 * 107.79744 * 0.02634 * 26 25 24 28 28 C 1.47179 * 88.01099 * 26.88692 * 15 14 13 29 29 C 1.47144 * 120.70190 * 329.00616 * 9 7 2 30 30 H 0.97004 * 119.99892 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.53475 * 244.46588 * 10 9 7 32 32 H 1.09001 * 109.52748 * 4.68842 * 10 9 7 33 33 H 1.08998 * 109.48629 * 176.48140 * 11 10 9 34 34 H 1.09000 * 109.48837 * 296.53303 * 11 10 9 35 35 H 1.08997 * 109.48959 * 181.13814 * 12 11 10 36 36 H 1.08997 * 109.48827 * 61.06356 * 12 11 10 37 37 H 1.09000 * 113.48816 * 105.69269 * 14 13 12 38 38 H 1.09003 * 113.49228 * 335.18472 * 14 13 12 39 39 H 1.08999 * 109.51961 * 311.68545 * 20 18 16 40 40 H 1.08995 * 109.51618 * 71.80065 * 20 18 16 41 41 H 1.09001 * 109.45595 * 189.49239 * 21 20 18 42 42 H 1.09004 * 109.45382 * 309.43593 * 21 20 18 43 43 H 1.09002 * 109.56052 * 189.67092 * 22 21 20 44 44 H 1.09000 * 109.57263 * 69.28406 * 22 21 20 45 45 H 1.07999 * 125.86939 * 180.02562 * 25 24 23 46 46 H 1.07996 * 126.10138 * 180.02562 * 26 25 24 47 47 H 1.08996 * 113.49619 * 87.85513 * 28 15 14 48 48 H 1.08999 * 113.49079 * 218.37237 * 28 15 14 49 49 H 1.08996 * 109.64368 * 111.56194 * 29 9 7 50 50 H 1.09008 * 109.63417 * 350.94619 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0775 -1.2095 -0.1654 9 7 1.3416 -2.3788 0.2081 10 6 1.8066 -3.6261 -0.4132 11 6 2.0276 -4.6778 0.6779 12 6 0.7311 -4.8652 1.4724 13 6 0.3199 -3.5329 2.0905 14 6 1.1468 -3.1269 3.3109 15 7 -0.1023 -2.6574 3.9316 16 6 -0.4390 -1.7355 4.8552 17 8 0.4083 -0.9987 5.3137 18 6 -1.8684 -1.6200 5.3183 19 1 -2.5426 -1.8631 4.4970 20 6 -2.1409 -0.1910 5.8062 21 6 -3.4850 -0.1557 6.5394 22 6 -3.3659 -0.9196 7.8637 23 7 -2.7772 -2.2359 7.5995 24 7 -2.7951 -3.3584 8.4301 25 6 -2.1596 -4.3277 7.8190 26 6 -1.7172 -3.8493 6.5792 27 6 -2.1082 -2.5643 6.4703 28 6 -0.8218 -3.6409 3.1062 29 6 0.1424 -2.4207 1.0598 30 1 -0.4850 0.8401 0.0004 31 1 1.0560 -3.9842 -1.1178 32 1 2.7439 -3.4439 -0.9389 33 1 2.3126 -5.6242 0.2184 34 1 2.8204 -4.3454 1.3481 35 1 0.8916 -5.5986 2.2626 36 1 -0.0567 -5.2152 0.8053 37 1 1.8581 -2.3266 3.1070 38 1 1.5991 -3.9719 3.8300 39 1 -1.3471 0.1194 6.4857 40 1 -2.1741 0.4853 4.9520 41 1 -3.7625 0.8793 6.7392 42 1 -4.2495 -0.6229 5.9186 43 1 -4.3553 -1.0436 8.3038 44 1 -2.7259 -0.3642 8.5494 45 1 -2.0037 -5.3242 8.2050 46 1 -1.1619 -4.4101 5.8421 47 1 -0.8990 -4.6242 3.5702 48 1 -1.7770 -3.2757 2.7291 49 1 -0.7353 -2.6258 0.4470 50 1 0.0217 -1.4648 1.5696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981852898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:05 Heat of formation + Delta-G solvation = 79.502675 kcal Electronic energy + Delta-G solvation = -31822.187498 eV Core-core repulsion = 27851.818354 eV Total energy + Delta-G solvation = -3970.369145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.73716 -41.73085 -39.74972 -37.52767 -37.13766 -34.72489 -33.84403 -32.09566 -31.47300 -31.10763 -29.37589 -27.82653 -27.19701 -26.94755 -25.37307 -23.92381 -23.28450 -22.40051 -22.13151 -20.66719 -19.79457 -19.38312 -18.55621 -18.27308 -17.82025 -17.11616 -16.76317 -16.40416 -16.33587 -15.75133 -15.61426 -15.44347 -15.22956 -15.01721 -14.77719 -14.68746 -14.55629 -14.24472 -14.14133 -13.70506 -13.42790 -13.39474 -13.21502 -13.04763 -12.94044 -12.72538 -12.60278 -12.44629 -12.24574 -12.15233 -12.09499 -11.98544 -11.73124 -11.68752 -11.45972 -11.29917 -10.95915 -10.79742 -10.54356 -10.20424 -9.66690 -9.56773 -8.59375 -7.88420 -5.35478 0.74327 1.34130 1.38319 1.42450 1.49468 1.66835 1.75442 1.94358 2.46721 3.21405 3.24958 3.36998 3.40528 3.46184 3.54718 3.80386 3.92931 4.03211 4.06063 4.11431 4.17672 4.22247 4.37170 4.40168 4.47450 4.49283 4.55154 4.60834 4.65544 4.68153 4.71224 4.80919 4.84682 4.88290 4.90143 4.94246 5.07859 5.11777 5.13750 5.14224 5.23015 5.34494 5.39660 5.53421 5.60582 5.69269 5.71765 5.80628 5.94808 6.42016 6.69305 6.77068 7.04895 7.17605 7.89644 8.39305 9.16745 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003802 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.480192 B = 7363.209956 C = 8965.676582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.042 4.042 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.300 1.300 7 C -0.255 4.255 8 H 0.059 0.941 9 N -0.609 5.609 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.085 4.085 13 C -0.107 4.107 14 C 0.118 3.882 15 N -0.636 5.636 16 C 0.548 3.452 17 O -0.591 6.591 18 C -0.031 4.031 19 H 0.127 0.873 20 C -0.117 4.117 21 C -0.120 4.120 22 C 0.123 3.877 23 N -0.371 5.371 24 N -0.320 5.320 25 C 0.046 3.954 26 C -0.271 4.271 27 C 0.088 3.912 28 C 0.117 3.883 29 C 0.212 3.788 30 H 0.247 0.753 31 H 0.019 0.981 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.215 0.785 46 H 0.156 0.844 47 H 0.127 0.873 48 H 0.082 0.918 49 H 0.002 0.998 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.828 -11.063 11.715 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.228 1.228 7 C -0.386 4.386 8 H 0.077 0.923 9 N -0.332 5.332 10 C 0.012 3.988 11 C -0.164 4.164 12 C -0.123 4.123 13 C -0.109 4.109 14 C -0.004 4.004 15 N -0.368 5.368 16 C 0.338 3.662 17 O -0.472 6.472 18 C -0.054 4.054 19 H 0.144 0.856 20 C -0.155 4.155 21 C -0.158 4.158 22 C 0.003 3.997 23 N -0.155 5.155 24 N -0.141 5.141 25 C -0.139 4.139 26 C -0.300 4.300 27 C -0.040 4.040 28 C -0.005 4.005 29 C 0.086 3.914 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.232 0.768 46 H 0.174 0.826 47 H 0.145 0.855 48 H 0.101 0.899 49 H 0.020 0.980 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.235 -9.893 13.198 18.903 hybrid contribution 1.192 1.340 -1.011 2.059 sum -8.043 -8.553 12.186 16.922 Atomic orbital electron populations 1.70089 1.06151 1.25260 1.56019 1.25695 0.96112 1.00768 1.01221 0.85439 0.78908 0.81046 0.76577 1.19286 1.21222 1.22782 1.19426 0.90884 0.85332 1.42925 0.92303 1.44238 1.31045 1.04150 1.53789 1.21102 0.96972 0.86599 0.94150 1.21910 0.97714 0.98795 0.97962 1.21241 0.97496 0.93614 0.99900 1.22465 0.96047 0.98564 0.93871 1.22999 0.88475 0.97808 0.91113 1.49628 1.12982 1.35272 1.38962 1.20090 0.90379 0.78796 0.76946 1.90660 1.53308 1.44788 1.58453 1.19964 0.93450 0.96134 0.95846 0.85552 1.21620 0.98861 0.93295 1.01712 1.21968 0.96308 1.03266 0.94300 1.22151 1.00367 0.77750 0.99453 1.48956 1.43145 1.11209 1.12186 1.77215 1.25310 0.93747 1.17872 1.24424 0.96417 0.99804 0.93266 1.21348 1.12288 0.94731 1.01638 1.20456 0.98231 0.95395 0.89964 1.23369 0.96822 0.92814 0.87506 1.20122 0.87167 0.94961 0.89144 0.94379 0.96303 0.93675 0.89511 0.93261 0.88886 0.90769 0.94705 0.87533 0.91935 0.90144 0.85666 0.89365 0.86778 0.89594 0.76822 0.82592 0.85531 0.89935 0.97954 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 11.05 21.65 0.24 -54.53 16 2 C -0.04 -2.40 5.06 84.86 0.43 -1.97 16 3 Si 0.95 46.73 29.57 68.60 2.03 48.76 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 7 C -0.25 -14.10 9.59 84.03 0.81 -13.29 16 8 H 0.06 3.24 7.85 -2.91 -0.02 3.22 16 9 N -0.61 -29.46 3.00 -699.69 -2.10 -31.55 16 10 C 0.14 5.27 6.45 86.35 0.56 5.82 16 11 C -0.12 -3.52 6.03 30.71 0.19 -3.33 16 12 C -0.08 -2.05 5.11 30.50 0.16 -1.90 16 13 C -0.11 -3.37 0.96 -52.41 -0.05 -3.42 16 14 C 0.12 4.01 7.53 83.33 0.63 4.64 16 15 N -0.64 -20.92 3.48 -857.45 -2.99 -23.90 16 16 C 0.55 19.95 6.83 87.65 0.60 20.55 16 17 O -0.59 -27.21 16.68 -3.03 -0.05 -27.26 16 18 C -0.03 -0.86 2.77 -12.08 -0.03 -0.90 16 19 H 0.13 3.04 7.94 -2.39 -0.02 3.02 16 20 C -0.12 -2.93 5.05 30.79 0.16 -2.77 16 21 C -0.12 -1.91 5.94 30.76 0.18 -1.73 16 22 C 0.12 2.18 7.28 86.48 0.63 2.81 16 23 N -0.37 -9.29 4.04 -333.91 -1.35 -10.64 16 24 N -0.32 -8.39 12.62 -56.80 -0.72 -9.11 16 25 C 0.05 1.02 12.03 85.25 1.03 2.04 16 26 C -0.27 -6.54 10.30 21.91 0.23 -6.32 16 27 C 0.09 2.31 6.12 41.28 0.25 2.56 16 28 C 0.12 2.90 7.33 83.43 0.61 3.51 16 29 C 0.21 9.52 4.37 86.15 0.38 9.89 16 30 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 1.76 7.93 -2.39 -0.02 1.74 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.49 8.02 -2.39 -0.02 1.47 16 35 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 38 H 0.11 2.87 8.06 -2.39 -0.02 2.85 16 39 H 0.06 1.86 7.43 -2.39 -0.02 1.84 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.16 3.30 7.54 -2.91 -0.02 3.28 16 47 H 0.13 2.08 7.72 -2.39 -0.02 2.06 16 48 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 49 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 50 H 0.05 2.57 6.02 -2.38 -0.01 2.56 16 Total: -1.00 -78.70 392.92 2.73 -75.97 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.92 Total: 16.04 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 6.74 Total: 16.22 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -6.91 Total: -129.73 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.70 2.73 -75.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981852898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.477 kcal (2) G-P(sol) polarization free energy of solvation -78.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds