Wall clock time and date at job start Wed Apr 1 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38546 * 120.01304 * 2 1 4 4 C 1.40074 * 117.81589 * 180.02562 * 3 2 1 5 5 C 1.48133 * 121.14675 * 180.02562 * 4 3 2 6 6 O 1.21516 * 120.00210 * 214.53108 * 5 4 3 7 7 N 1.34777 * 120.00039 * 34.53183 * 5 4 3 8 8 C 1.47203 * 126.70159 * 185.23200 * 7 5 4 9 9 C 1.53772 * 106.40196 * 211.33153 * 8 7 5 10 10 C 1.52995 * 112.06726 * 103.40654 * 9 8 7 11 11 C 1.54318 * 109.07276 * 228.10688 * 9 8 7 12 12 N 1.50802 * 103.42249 * 88.72844 * 11 9 8 13 13 C 1.36933 * 127.62860 * 219.61519 * 12 11 9 14 14 H 1.07997 * 119.99907 * 166.69002 * 13 12 11 15 15 C 1.38810 * 120.00220 * 346.69663 * 13 12 11 16 16 N 1.31628 * 119.99848 * 351.48890 * 15 13 12 17 17 Si 1.86799 * 120.00258 * 171.49419 * 15 13 12 18 18 H 1.48496 * 109.47406 * 59.99803 * 17 15 13 19 19 H 1.48504 * 109.47020 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46918 * 299.99636 * 17 15 13 21 21 C 1.48109 * 104.52409 * 39.78566 * 12 11 9 22 22 C 1.54315 * 104.71562 * 320.06962 * 21 12 11 23 23 C 1.53008 * 112.07266 * 145.86555 * 22 21 12 24 24 C 1.47201 * 126.70254 * 4.91162 * 7 5 4 25 25 C 1.39768 * 117.70720 * 0.02562 * 4 3 2 26 26 C 1.50700 * 120.17204 * 179.97438 * 25 4 3 27 27 N 1.31897 * 119.65637 * 0.26088 * 25 4 3 28 28 N 1.28277 * 122.32534 * 359.45785 * 27 25 4 29 29 H 1.08997 * 109.47331 * 89.99427 * 1 2 3 30 30 H 1.08997 * 109.47037 * 209.99999 * 1 2 3 31 31 H 1.08998 * 109.47198 * 329.99670 * 1 2 3 32 32 H 1.07998 * 121.09254 * 0.05257 * 3 2 1 33 33 H 1.09000 * 110.06788 * 330.56121 * 8 7 5 34 34 H 1.08999 * 110.07269 * 92.04483 * 8 7 5 35 35 H 1.08999 * 109.47080 * 61.00799 * 10 9 8 36 36 H 1.08991 * 109.47201 * 181.01436 * 10 9 8 37 37 H 1.08999 * 109.47240 * 301.01598 * 10 9 8 38 38 H 1.08996 * 110.38722 * 207.14648 * 11 9 8 39 39 H 1.09002 * 110.39383 * 329.52959 * 11 9 8 40 40 H 0.97000 * 119.99895 * 180.02562 * 16 15 13 41 41 H 1.09004 * 110.38983 * 201.26426 * 21 12 11 42 42 H 1.09002 * 110.39207 * 78.88397 * 21 12 11 43 43 H 1.08997 * 109.46936 * 302.40794 * 23 22 21 44 44 H 1.08996 * 109.47004 * 62.41350 * 23 22 21 45 45 H 1.09000 * 109.46617 * 182.41049 * 23 22 21 46 46 H 1.09005 * 110.06987 * 267.90860 * 24 7 5 47 47 H 1.09000 * 110.06666 * 29.44148 * 24 7 5 48 48 H 1.09001 * 109.47154 * 83.96019 * 26 25 4 49 49 H 1.09003 * 109.47486 * 323.95973 * 26 25 4 50 50 H 1.08997 * 109.47167 * 203.95865 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3835 0.0000 6 8 5.4719 2.4149 -0.5969 7 7 3.9813 3.4745 0.6625 8 6 4.6117 4.8047 0.6733 9 6 4.3103 5.4169 2.0513 10 6 5.5235 5.3631 2.9820 11 6 3.7892 6.8568 1.8603 12 7 2.3001 6.6731 1.7095 13 6 1.4584 7.3341 0.8553 14 1 0.4567 6.9653 0.6913 15 6 1.8927 8.4781 0.2000 16 7 3.0467 9.0232 0.5222 17 14 0.8395 9.2443 -1.1391 18 1 -0.4765 9.6335 -0.5719 19 1 1.5218 10.4485 -1.6772 20 1 0.6358 8.2601 -2.2324 21 6 1.9539 5.6223 2.6942 22 6 3.1108 4.6051 2.6051 23 6 3.4214 3.9673 3.9607 24 6 2.7826 3.5705 1.5114 25 6 4.2016 -0.1154 -0.0016 26 6 5.7037 -0.2379 -0.0028 27 7 3.4483 -1.1980 -0.0073 28 7 2.1667 -1.1420 -0.0017 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6781 2.1452 0.0008 33 1 5.6885 4.7094 0.5338 34 1 4.1863 5.4267 -0.1143 35 1 6.3425 5.9341 2.5447 36 1 5.2586 5.7900 3.9492 37 1 5.8337 4.3267 3.1150 38 1 4.0154 7.4620 2.7382 39 1 4.2262 7.3036 0.9672 40 1 3.3500 9.8228 0.0646 41 1 1.0096 5.1478 2.4271 42 1 1.8968 6.0456 3.6971 43 1 3.6643 4.7474 4.6821 44 1 2.5516 3.4095 4.3077 45 1 4.2697 3.2905 3.8580 46 1 1.9308 3.9054 0.9194 47 1 2.5667 2.6029 1.9644 48 1 6.0754 -0.1602 1.0189 49 1 6.1329 0.5611 -0.6074 50 1 5.9891 -1.2032 -0.4208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982289176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:18 Heat of formation + Delta-G solvation = 57.126904 kcal Electronic energy + Delta-G solvation = -32026.928364 eV Core-core repulsion = 28055.588933 eV Total energy + Delta-G solvation = -3971.339431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.56686 -40.37705 -38.59900 -35.16638 -34.52266 -33.77964 -32.98581 -31.83980 -30.71278 -30.08164 -27.32126 -26.98334 -26.18925 -25.96576 -25.02034 -24.60725 -22.84331 -22.14255 -20.26605 -19.81270 -18.14167 -17.74517 -17.23770 -16.62563 -16.03806 -15.88880 -15.48584 -15.36501 -14.72663 -14.32947 -14.20503 -14.04073 -13.70468 -13.60177 -13.47650 -13.38963 -13.27252 -13.03258 -12.80914 -12.58521 -12.36170 -12.22831 -12.11557 -11.82269 -11.58279 -11.55654 -11.41225 -11.15729 -10.92487 -10.88753 -10.70732 -10.47732 -10.34336 -10.20396 -10.15102 -9.95069 -9.82851 -9.66078 -9.63118 -9.51645 -8.78639 -8.54350 -6.98918 -5.87660 -3.22304 0.22822 0.64776 2.58730 2.88305 3.31636 3.34825 3.36998 3.38349 3.73386 4.07904 4.18249 4.30406 4.37298 4.55091 4.65856 4.85562 4.91201 4.97524 5.08244 5.27345 5.31961 5.33185 5.38167 5.43697 5.47182 5.49639 5.54848 5.56382 5.58767 5.63825 5.70293 5.82765 5.90215 5.95497 6.02032 6.05291 6.13079 6.14643 6.19041 6.20771 6.29989 6.36566 6.44466 6.60435 6.68855 6.77728 7.15216 7.42448 7.55766 7.60117 8.02723 8.05288 8.49518 8.97381 9.63416 10.38336 11.25556 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.003792 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.029972 B = 7381.632938 C = 8139.423930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 C -0.083 4.083 4 C -0.118 4.118 5 C 0.577 3.423 6 O -0.529 6.529 7 N -0.597 5.597 8 C 0.124 3.876 9 C -0.092 4.092 10 C -0.125 4.125 11 C 0.170 3.830 12 N -0.597 5.597 13 C -0.227 4.227 14 H 0.075 0.925 15 C -0.003 4.003 16 N -0.915 5.915 17 Si 0.909 3.091 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.141 3.859 22 C -0.085 4.085 23 C -0.126 4.126 24 C 0.113 3.887 25 C 0.113 3.887 26 C -0.119 4.119 27 N -0.244 5.244 28 N -0.230 5.230 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.027 0.973 39 H 0.096 0.904 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -14.188 3.898 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 C -0.112 4.112 4 C -0.133 4.133 5 C 0.364 3.636 6 O -0.407 6.407 7 N -0.328 5.328 8 C 0.003 3.997 9 C -0.095 4.095 10 C -0.183 4.183 11 C 0.045 3.955 12 N -0.321 5.321 13 C -0.355 4.355 14 H 0.093 0.907 15 C -0.200 4.200 16 N -0.561 5.561 17 Si 0.739 3.261 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.212 1.212 21 C 0.014 3.986 22 C -0.087 4.087 23 C -0.183 4.183 24 C -0.009 4.009 25 C -0.032 4.032 26 C -0.177 4.177 27 N -0.085 5.085 28 N -0.073 5.073 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.177 0.823 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.130 0.870 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.613 -15.656 3.350 16.022 hybrid contribution -0.653 2.101 -0.654 2.295 sum -0.040 -13.555 2.696 13.821 Atomic orbital electron populations 1.20703 0.86902 1.04356 1.03902 1.22862 0.99320 0.89837 0.96540 1.22775 0.93358 1.00856 0.94230 1.21068 0.94513 0.95552 1.02128 1.17457 0.84928 0.81568 0.79655 1.90706 1.22373 1.82864 1.44736 1.48480 1.27218 1.10525 1.46535 1.22273 0.98166 0.80867 0.98386 1.22521 0.94162 0.99740 0.93051 1.21688 0.96780 1.00732 0.99097 1.22129 0.83824 0.88272 1.01254 1.45521 1.03323 1.42766 1.40498 1.18910 0.95286 1.04420 1.16882 0.90688 1.24813 0.97774 0.96682 1.00726 1.69840 1.20945 1.22112 1.43240 0.86257 0.79443 0.78617 0.81775 1.21056 1.21527 1.21179 1.21649 0.93882 0.89600 0.93444 1.22393 0.97658 0.95040 0.93641 1.21677 1.00689 1.00271 0.95673 1.22466 0.87845 0.98842 0.91795 1.23025 0.99517 0.88465 0.92161 1.21061 0.86852 1.05501 1.04324 1.73027 0.98985 1.26237 1.10297 1.72772 1.01793 1.24964 1.07760 0.89666 0.89755 0.89858 0.82337 0.90800 0.89831 0.92601 0.92256 0.93306 0.95459 0.88640 0.93462 0.93372 0.95578 0.91802 0.92983 0.92954 0.90226 0.91587 0.90019 0.86971 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.19 36.01 0.37 -0.41 16 2 C 0.06 0.68 6.86 -82.46 -0.57 0.11 16 3 C -0.08 -0.99 7.87 -38.78 -0.31 -1.30 16 4 C -0.12 -1.64 5.48 -104.57 -0.57 -2.21 16 5 C 0.58 9.04 7.35 -12.20 -0.09 8.95 16 6 O -0.53 -9.43 14.42 5.35 0.08 -9.35 16 7 N -0.60 -9.19 3.32 -172.42 -0.57 -9.76 16 8 C 0.12 2.12 6.14 -3.26 -0.02 2.10 16 9 C -0.09 -1.51 1.06 -152.33 -0.16 -1.67 16 10 C -0.13 -1.76 7.47 37.15 0.28 -1.48 16 11 C 0.17 3.60 4.94 -0.93 0.00 3.59 16 12 N -0.60 -13.37 3.43 -166.73 -0.57 -13.94 16 13 C -0.23 -5.72 10.37 -15.06 -0.16 -5.87 16 14 H 0.08 1.83 7.84 -52.49 -0.41 1.42 16 15 C 0.00 -0.07 5.43 -17.43 -0.09 -0.17 16 16 N -0.92 -24.99 10.72 55.49 0.59 -24.39 16 17 Si 0.91 20.83 29.56 -169.99 -5.03 15.80 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.14 2.51 6.09 -2.47 -0.02 2.49 16 22 C -0.08 -1.25 1.09 -152.16 -0.17 -1.42 16 23 C -0.13 -1.52 7.55 37.16 0.28 -1.24 16 24 C 0.11 1.57 4.42 -3.09 -0.01 1.56 16 25 C 0.11 1.57 6.90 -81.99 -0.57 1.00 16 26 C -0.12 -1.42 9.63 36.01 0.35 -1.07 16 27 N -0.24 -3.56 11.42 33.81 0.39 -3.17 16 28 N -0.23 -3.20 11.40 33.58 0.38 -2.81 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.16 1.68 6.02 -52.49 -0.32 1.37 16 33 H 0.07 1.24 7.56 -51.93 -0.39 0.85 16 34 H 0.08 1.66 7.48 -51.93 -0.39 1.27 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.80 7.15 -51.93 -0.37 0.42 16 37 H 0.05 0.64 7.10 -51.93 -0.37 0.27 16 38 H 0.03 0.61 7.97 -51.93 -0.41 0.20 16 39 H 0.10 2.30 5.96 -51.93 -0.31 2.00 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.05 0.80 7.66 -51.93 -0.40 0.41 16 42 H 0.03 0.48 7.96 -51.93 -0.41 0.06 16 43 H 0.06 0.77 7.17 -51.93 -0.37 0.40 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.62 7.09 -51.93 -0.37 0.25 16 46 H 0.08 1.16 6.76 -51.93 -0.35 0.81 16 47 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.11 1.49 5.46 -51.93 -0.28 1.21 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -29.70 385.36 -7.96 -37.67 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.59 Total: 1.20 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.46 Total: 2.95 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.22 Total: -54.08 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.70 -7.96 -37.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982289176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.796 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds