Wall clock time and date at job start Wed Apr 1 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38546 * 120.01304 * 2 1 4 4 C 1.40074 * 117.81589 * 180.02562 * 3 2 1 5 5 C 1.48133 * 121.14675 * 180.02562 * 4 3 2 6 6 O 1.21516 * 120.00210 * 214.53108 * 5 4 3 7 7 N 1.34777 * 120.00039 * 34.53183 * 5 4 3 8 8 C 1.47203 * 126.70159 * 185.23200 * 7 5 4 9 9 C 1.53772 * 106.40196 * 211.33153 * 8 7 5 10 10 C 1.52995 * 112.06726 * 103.40654 * 9 8 7 11 11 C 1.54318 * 109.07276 * 228.10688 * 9 8 7 12 12 N 1.50802 * 103.42249 * 88.72844 * 11 9 8 13 13 C 1.36933 * 127.62860 * 219.61519 * 12 11 9 14 14 H 1.07997 * 119.99907 * 166.69002 * 13 12 11 15 15 C 1.38810 * 120.00220 * 346.69663 * 13 12 11 16 16 N 1.31628 * 119.99848 * 351.48890 * 15 13 12 17 17 Si 1.86799 * 120.00258 * 171.49419 * 15 13 12 18 18 H 1.48496 * 109.47406 * 59.99803 * 17 15 13 19 19 H 1.48504 * 109.47020 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46918 * 299.99636 * 17 15 13 21 21 C 1.48109 * 104.52409 * 39.78566 * 12 11 9 22 22 C 1.54315 * 104.71562 * 320.06962 * 21 12 11 23 23 C 1.53008 * 112.07266 * 145.86555 * 22 21 12 24 24 C 1.47201 * 126.70254 * 4.91162 * 7 5 4 25 25 C 1.39768 * 117.70720 * 0.02562 * 4 3 2 26 26 C 1.50700 * 120.17204 * 179.97438 * 25 4 3 27 27 N 1.31897 * 119.65637 * 0.26088 * 25 4 3 28 28 N 1.28277 * 122.32534 * 359.45785 * 27 25 4 29 29 H 1.08997 * 109.47331 * 89.99427 * 1 2 3 30 30 H 1.08997 * 109.47037 * 209.99999 * 1 2 3 31 31 H 1.08998 * 109.47198 * 329.99670 * 1 2 3 32 32 H 1.07998 * 121.09254 * 0.05257 * 3 2 1 33 33 H 1.09000 * 110.06788 * 330.56121 * 8 7 5 34 34 H 1.08999 * 110.07269 * 92.04483 * 8 7 5 35 35 H 1.08999 * 109.47080 * 61.00799 * 10 9 8 36 36 H 1.08991 * 109.47201 * 181.01436 * 10 9 8 37 37 H 1.08999 * 109.47240 * 301.01598 * 10 9 8 38 38 H 1.08996 * 110.38722 * 207.14648 * 11 9 8 39 39 H 1.09002 * 110.39383 * 329.52959 * 11 9 8 40 40 H 0.97000 * 119.99895 * 180.02562 * 16 15 13 41 41 H 1.09004 * 110.38983 * 201.26426 * 21 12 11 42 42 H 1.09002 * 110.39207 * 78.88397 * 21 12 11 43 43 H 1.08997 * 109.46936 * 302.40794 * 23 22 21 44 44 H 1.08996 * 109.47004 * 62.41350 * 23 22 21 45 45 H 1.09000 * 109.46617 * 182.41049 * 23 22 21 46 46 H 1.09005 * 110.06987 * 267.90860 * 24 7 5 47 47 H 1.09000 * 110.06666 * 29.44148 * 24 7 5 48 48 H 1.09001 * 109.47154 * 83.96019 * 26 25 4 49 49 H 1.09003 * 109.47486 * 323.95973 * 26 25 4 50 50 H 1.08997 * 109.47167 * 203.95865 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3835 0.0000 6 8 5.4719 2.4149 -0.5969 7 7 3.9813 3.4745 0.6625 8 6 4.6117 4.8047 0.6733 9 6 4.3103 5.4169 2.0513 10 6 5.5235 5.3631 2.9820 11 6 3.7892 6.8568 1.8603 12 7 2.3001 6.6731 1.7095 13 6 1.4584 7.3341 0.8553 14 1 0.4567 6.9653 0.6913 15 6 1.8927 8.4781 0.2000 16 7 3.0467 9.0232 0.5222 17 14 0.8395 9.2443 -1.1391 18 1 -0.4765 9.6335 -0.5719 19 1 1.5218 10.4485 -1.6772 20 1 0.6358 8.2601 -2.2324 21 6 1.9539 5.6223 2.6942 22 6 3.1108 4.6051 2.6051 23 6 3.4214 3.9673 3.9607 24 6 2.7826 3.5705 1.5114 25 6 4.2016 -0.1154 -0.0016 26 6 5.7037 -0.2379 -0.0028 27 7 3.4483 -1.1980 -0.0073 28 7 2.1667 -1.1420 -0.0017 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6781 2.1452 0.0008 33 1 5.6885 4.7094 0.5338 34 1 4.1863 5.4267 -0.1143 35 1 6.3425 5.9341 2.5447 36 1 5.2586 5.7900 3.9492 37 1 5.8337 4.3267 3.1150 38 1 4.0154 7.4620 2.7382 39 1 4.2262 7.3036 0.9672 40 1 3.3500 9.8228 0.0646 41 1 1.0096 5.1478 2.4271 42 1 1.8968 6.0456 3.6971 43 1 3.6643 4.7474 4.6821 44 1 2.5516 3.4095 4.3077 45 1 4.2697 3.2905 3.8580 46 1 1.9308 3.9054 0.9194 47 1 2.5667 2.6029 1.9644 48 1 6.0754 -0.1602 1.0189 49 1 6.1329 0.5611 -0.6074 50 1 5.9891 -1.2032 -0.4208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982289176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:17 Heat of formation + Delta-G solvation = 39.678179 kcal Electronic energy + Delta-G solvation = -32027.684998 eV Core-core repulsion = 28055.588933 eV Total energy + Delta-G solvation = -3972.096064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.62711 -41.62463 -39.88586 -36.56985 -35.53797 -35.00195 -34.39834 -33.13754 -32.35518 -30.95529 -28.57649 -27.94001 -27.72772 -27.14979 -26.45161 -25.71290 -23.96241 -23.57602 -21.72672 -21.00588 -19.39088 -18.82660 -18.78432 -18.08389 -17.24323 -16.91121 -16.67596 -16.59272 -16.39768 -15.67943 -15.47332 -15.24372 -15.01019 -14.72659 -14.62598 -14.53427 -14.38111 -14.24323 -13.64709 -13.52392 -13.48021 -13.34882 -13.25809 -13.08380 -12.96216 -12.93596 -12.70857 -12.61838 -12.50897 -12.13212 -12.12409 -11.93455 -11.72003 -11.59610 -11.49801 -11.34774 -11.19339 -11.10544 -10.70982 -10.63462 -10.53406 -9.83983 -8.83758 -7.84438 -5.18048 -0.80568 -0.29872 1.40986 1.48057 1.49310 1.55095 1.65753 2.33595 2.50874 2.82302 3.00583 3.20515 3.31534 3.34291 3.47291 3.52983 3.62773 3.75169 3.92935 4.01498 4.17792 4.20343 4.22497 4.33102 4.37880 4.41190 4.53964 4.60381 4.68743 4.71595 4.75064 4.79511 4.82505 4.87055 4.89361 4.94625 4.95734 5.01035 5.07279 5.17224 5.18804 5.20533 5.28799 5.31644 5.35864 5.44971 5.51699 5.61420 5.79766 6.21014 6.33006 6.78990 7.03662 7.50920 7.74068 8.52324 9.27995 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.003792 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.029972 B = 7381.632938 C = 8139.423930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.066 3.934 3 C -0.073 4.073 4 C -0.130 4.130 5 C 0.579 3.421 6 O -0.555 6.555 7 N -0.595 5.595 8 C 0.132 3.868 9 C -0.083 4.083 10 C -0.119 4.119 11 C 0.177 3.823 12 N -0.619 5.619 13 C -0.225 4.225 14 H 0.083 0.917 15 C -0.059 4.059 16 N -0.946 5.946 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.301 1.301 20 H -0.282 1.282 21 C 0.139 3.861 22 C -0.074 4.074 23 C -0.120 4.120 24 C 0.116 3.884 25 C 0.107 3.893 26 C -0.115 4.115 27 N -0.262 5.262 28 N -0.250 5.250 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.006 0.994 39 H 0.057 0.943 40 H 0.246 0.754 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 -16.400 5.101 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.079 4.079 3 C -0.103 4.103 4 C -0.144 4.144 5 C 0.368 3.632 6 O -0.435 6.435 7 N -0.325 5.325 8 C 0.009 3.991 9 C -0.085 4.085 10 C -0.177 4.177 11 C 0.052 3.948 12 N -0.343 5.343 13 C -0.354 4.354 14 H 0.101 0.899 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.794 3.206 18 H -0.202 1.202 19 H -0.227 1.227 20 H -0.208 1.208 21 C 0.013 3.987 22 C -0.076 4.076 23 C -0.178 4.178 24 C -0.006 4.006 25 C -0.039 4.039 26 C -0.173 4.173 27 N -0.103 5.103 28 N -0.092 5.092 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.042 -17.918 4.580 18.524 hybrid contribution -0.213 2.774 -1.029 2.966 sum -1.255 -15.144 3.550 15.606 Atomic orbital electron populations 1.20879 0.84050 1.05819 1.05086 1.23393 1.00985 0.88813 0.94743 1.22986 0.92547 1.01781 0.92964 1.20930 0.95207 0.94514 1.03785 1.17716 0.84700 0.81954 0.78878 1.90700 1.23693 1.83402 1.45689 1.48438 1.27545 1.09721 1.46820 1.21980 0.97871 0.81519 0.97683 1.22348 0.95966 0.96707 0.93483 1.21649 0.95411 1.01911 0.98699 1.21871 0.83721 0.90822 0.98422 1.45757 1.03704 1.43474 1.41349 1.19283 0.95745 1.03947 1.16435 0.89933 1.25489 0.98953 0.97813 1.03054 1.70036 1.22561 1.22368 1.44478 0.85356 0.78192 0.77353 0.79660 1.20238 1.22731 1.20806 1.21841 0.95782 0.88927 0.92146 1.22344 0.95235 0.94376 0.95672 1.21662 1.02129 1.00487 0.93497 1.22530 0.86901 0.99982 0.91222 1.23214 1.00186 0.88333 0.92133 1.21033 0.85954 1.05492 1.04840 1.72998 0.99556 1.26623 1.11140 1.72725 1.01686 1.26274 1.08536 0.88447 0.89008 0.87703 0.80796 0.90964 0.93475 0.92939 0.91351 0.91485 0.97582 0.92459 0.94519 0.91888 0.95491 0.91664 0.90700 0.91979 0.90701 0.88631 0.88810 0.88550 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.19 71.24 0.73 -0.46 16 2 C 0.07 1.32 6.86 42.62 0.29 1.62 16 3 C -0.07 -1.55 7.87 22.79 0.18 -1.37 16 4 C -0.13 -3.38 5.48 -19.83 -0.11 -3.48 16 5 C 0.58 17.52 7.35 86.87 0.64 18.15 16 6 O -0.56 -19.73 14.42 -3.77 -0.05 -19.79 16 7 N -0.59 -17.54 3.32 -817.71 -2.71 -20.25 16 8 C 0.13 4.53 6.14 86.51 0.53 5.06 16 9 C -0.08 -2.67 1.06 -50.77 -0.05 -2.72 16 10 C -0.12 -3.17 7.47 71.98 0.54 -2.64 16 11 C 0.18 7.70 4.94 85.98 0.42 8.13 16 12 N -0.62 -27.79 3.43 -681.41 -2.34 -30.13 16 13 C -0.23 -11.39 10.37 84.03 0.87 -10.52 16 14 H 0.08 3.95 7.84 -2.91 -0.02 3.93 16 15 C -0.06 -3.16 5.43 84.86 0.46 -2.70 16 16 N -0.95 -53.84 10.72 21.65 0.23 -53.61 16 17 Si 0.96 43.54 29.56 68.60 2.03 45.57 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C 0.14 4.66 6.09 86.52 0.53 5.19 16 22 C -0.07 -2.01 1.09 -50.66 -0.06 -2.06 16 23 C -0.12 -2.44 7.55 71.98 0.54 -1.90 16 24 C 0.12 2.89 4.42 86.61 0.38 3.27 16 25 C 0.11 2.80 6.90 42.92 0.30 3.10 16 26 C -0.12 -2.62 9.63 71.24 0.69 -1.94 16 27 N -0.26 -7.25 11.42 -46.94 -0.54 -7.79 16 28 N -0.25 -6.42 11.40 -47.69 -0.54 -6.97 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.17 3.09 6.02 -2.91 -0.02 3.07 16 33 H 0.07 2.48 7.56 -2.39 -0.02 2.46 16 34 H 0.05 1.96 7.48 -2.39 -0.02 1.95 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.71 7.15 -2.39 -0.02 1.69 16 37 H 0.07 1.57 7.10 -2.39 -0.02 1.55 16 38 H 0.01 0.29 7.97 -2.39 -0.02 0.27 16 39 H 0.06 2.94 5.96 -2.39 -0.01 2.92 16 40 H 0.25 13.87 8.31 -92.71 -0.77 13.09 16 41 H 0.06 1.92 7.66 -2.38 -0.02 1.90 16 42 H 0.03 0.92 7.96 -2.39 -0.02 0.91 16 43 H 0.06 1.34 7.17 -2.39 -0.02 1.32 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.19 7.09 -2.39 -0.02 1.17 16 46 H 0.07 1.98 6.76 -2.38 -0.02 1.96 16 47 H 0.10 1.87 6.48 -2.39 -0.02 1.85 16 48 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.10 2.54 5.46 -2.39 -0.01 2.53 16 50 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.81 385.36 3.91 -62.90 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.95 Total: 15.32 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.88 Total: 14.74 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -5.90 Total: -118.75 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.81 3.91 -62.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982289176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.581 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds