Wall clock time and date at job start Wed Apr 1 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.54312 * 112.07882 * 2 1 4 4 N 1.48105 * 104.71282 * 262.03392 * 3 2 1 5 5 C 1.36936 * 127.84124 * 140.24014 * 4 3 2 6 6 H 1.07997 * 120.00572 * 344.86206 * 5 4 3 7 7 C 1.38813 * 119.99859 * 164.85962 * 5 4 3 8 8 N 1.31619 * 120.00296 * 351.29911 * 7 5 4 9 9 Si 1.86804 * 119.99892 * 171.29835 * 7 5 4 10 10 H 1.48497 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47367 * 120.00096 * 9 7 5 12 12 H 1.48509 * 109.47078 * 239.99898 * 9 7 5 13 13 C 1.49975 * 104.94071 * 320.71671 * 4 3 2 14 14 C 1.54309 * 103.81627 * 38.69690 * 13 4 3 15 15 C 1.53002 * 112.07703 * 99.66001 * 14 13 4 16 16 C 1.53760 * 109.08061 * 224.36351 * 14 13 4 17 17 N 1.47204 * 106.40891 * 94.29094 * 16 14 13 18 18 C 1.34774 * 126.70414 * 211.29932 * 17 16 14 19 19 O 1.21597 * 120.00260 * 174.25446 * 18 17 16 20 20 C 1.47433 * 119.99793 * 353.97698 * 18 17 16 21 21 C 1.41201 * 126.44170 * 353.17134 * 20 18 17 22 22 N 1.30279 * 108.03203 * 179.97438 * 21 20 18 23 23 N 1.40509 * 109.02056 * 359.91783 * 22 21 20 24 24 C 1.34023 * 108.16418 * 359.90592 * 23 22 21 25 25 C 1.51397 * 110.33856 * 179.44798 * 24 23 22 26 26 C 1.54565 * 104.21281 * 343.97945 * 25 24 23 27 27 C 1.47256 * 140.82105 * 180.28124 * 23 22 21 28 28 C 1.47207 * 106.59260 * 31.55746 * 17 16 14 29 29 H 1.08992 * 109.47182 * 177.58798 * 1 2 3 30 30 H 1.08994 * 109.46987 * 297.59421 * 1 2 3 31 31 H 1.09000 * 109.46562 * 57.59090 * 1 2 3 32 32 H 1.08994 * 110.39052 * 20.84936 * 3 2 1 33 33 H 1.09007 * 110.38582 * 143.22526 * 3 2 1 34 34 H 0.96993 * 120.00106 * 180.02562 * 8 7 5 35 35 H 1.09007 * 110.28881 * 280.43996 * 13 4 3 36 36 H 1.09004 * 111.35431 * 157.46997 * 13 4 3 37 37 H 1.09004 * 109.46939 * 182.01125 * 15 14 13 38 38 H 1.08997 * 109.47472 * 302.01708 * 15 14 13 39 39 H 1.08999 * 109.46598 * 62.01921 * 15 14 13 40 40 H 1.09002 * 110.06599 * 335.05054 * 16 14 13 41 41 H 1.09005 * 110.11325 * 213.55020 * 16 14 13 42 42 H 1.07998 * 125.98203 * 359.97438 * 21 20 18 43 43 H 1.09002 * 110.65576 * 225.20006 * 25 24 23 44 44 H 1.08996 * 110.38892 * 102.62791 * 25 24 23 45 45 H 1.09003 * 110.99562 * 266.70061 * 26 25 24 46 46 H 1.09003 * 111.02713 * 142.89305 * 26 25 24 47 47 H 1.09002 * 110.22984 * 316.07331 * 27 23 22 48 48 H 1.09003 * 110.22661 * 78.02921 * 27 23 22 49 49 H 1.08997 * 110.06615 * 87.68362 * 28 17 16 50 50 H 1.08998 * 110.06901 * 209.20835 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4300 0.0000 4 7 2.4354 1.7039 -1.4187 5 6 2.2603 2.8728 -2.1101 6 1 1.6265 3.6489 -1.7072 7 6 2.8976 3.0604 -3.3290 8 7 3.8004 2.1951 -3.7396 9 14 2.4739 4.5408 -4.3864 10 1 1.4357 5.3550 -3.7050 11 1 3.6916 5.3648 -4.5953 12 1 1.9572 4.0793 -5.7000 13 6 2.9912 0.4138 -1.9440 14 6 2.1157 -0.6651 -1.2727 15 6 1.0222 -1.1830 -2.2092 16 6 3.0197 -1.7974 -0.7581 17 7 3.3081 -1.4909 0.6525 18 6 4.4322 -1.7973 1.3298 19 8 4.5863 -1.3937 2.4665 20 6 5.4725 -2.6269 0.6948 21 6 5.3781 -3.2806 -0.5532 22 7 6.4990 -3.9099 -0.7646 23 7 7.3592 -3.6917 0.3247 24 6 6.7256 -2.9063 1.2067 25 6 7.6065 -2.6500 2.4110 26 6 8.7077 -3.7301 2.3124 27 6 8.7100 -4.0359 0.7993 28 6 2.1262 -0.7900 1.1804 29 1 -0.3633 -1.0267 -0.0432 30 1 -0.3633 0.4760 0.9107 31 1 -0.3632 0.5508 -0.8676 32 1 1.3681 2.1407 0.3636 33 1 3.0112 1.4742 0.6117 34 1 4.2460 2.3263 -4.5911 35 1 4.0324 0.2999 -1.6420 36 1 2.9009 0.3552 -3.0287 37 1 0.4091 -1.9143 -1.6824 38 1 0.3973 -0.3509 -2.5334 39 1 1.4814 -1.6530 -3.0788 40 1 3.9462 -1.8262 -1.3317 41 1 2.5028 -2.7540 -0.8349 42 1 4.5258 -3.2620 -1.2163 43 1 7.0390 -2.7667 3.3343 44 1 8.0438 -1.6531 2.3563 45 1 8.4392 -4.6153 2.8892 46 1 9.6721 -3.3358 2.6326 47 1 8.9114 -5.0935 0.6287 48 1 9.4552 -3.4230 0.2921 49 1 1.4002 -1.5113 1.5556 50 1 2.4212 -0.1068 1.9768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982293621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:31 Heat of formation + Delta-G solvation = 98.932346 kcal Electronic energy + Delta-G solvation = -31807.213457 eV Core-core repulsion = 27837.686846 eV Total energy + Delta-G solvation = -3969.526611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.91278 -40.24741 -38.04913 -36.50598 -34.73234 -32.85222 -31.74390 -31.07224 -30.51336 -29.59212 -27.93708 -26.71115 -25.80439 -25.47731 -24.74677 -22.70290 -22.29784 -21.35831 -20.62681 -19.95458 -18.89628 -17.76892 -17.08520 -16.70619 -16.51389 -15.41457 -15.30480 -14.98092 -14.69109 -14.33321 -14.13075 -14.03190 -13.82901 -13.71695 -13.56104 -13.25990 -13.22216 -12.91192 -12.71400 -12.35335 -11.92630 -11.87281 -11.84275 -11.61194 -11.55656 -11.47360 -11.31294 -11.23419 -10.92746 -10.82391 -10.70604 -10.60379 -10.02099 -9.89070 -9.80749 -9.72173 -9.52943 -9.45155 -9.40033 -8.65548 -8.62161 -8.22002 -6.78715 -5.74192 -3.07332 1.53720 2.07351 2.22929 3.31331 3.39648 3.46171 3.48211 3.67512 3.77592 4.20867 4.35602 4.46087 4.49568 4.73127 4.87822 4.92790 5.10089 5.11203 5.19071 5.23322 5.26669 5.41591 5.48191 5.54881 5.56517 5.59219 5.63077 5.66086 5.71922 5.81236 5.90858 5.93138 6.02730 6.06301 6.17521 6.25356 6.39164 6.41945 6.51156 6.54494 6.58005 6.62404 6.70590 6.79334 6.90696 7.04601 7.37204 7.58471 7.59343 7.75789 7.92230 8.22903 8.54706 9.14166 9.79014 10.56629 11.39944 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.003428 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.440746 B = 8165.343553 C = 9067.392391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C 0.142 3.858 4 N -0.596 5.596 5 C -0.221 4.221 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.916 5.916 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.290 1.290 13 C 0.175 3.825 14 C -0.093 4.093 15 C -0.120 4.120 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.614 3.386 19 O -0.556 6.556 20 C -0.271 4.271 21 C 0.078 3.922 22 N -0.278 5.278 23 N -0.386 5.386 24 C 0.135 3.865 25 C -0.070 4.070 26 C -0.133 4.133 27 C 0.126 3.874 28 C 0.123 3.877 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.252 0.748 35 H 0.021 0.979 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.206 0.794 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.060 0.940 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -14.909 10.064 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.085 4.085 3 C 0.015 3.985 4 N -0.319 5.319 5 C -0.350 4.350 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.563 5.563 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.217 1.217 13 C 0.050 3.950 14 C -0.095 4.095 15 C -0.177 4.177 16 C -0.021 4.021 17 N -0.337 5.337 18 C 0.405 3.595 19 O -0.436 6.436 20 C -0.285 4.285 21 C -0.109 4.109 22 N -0.095 5.095 23 N -0.165 5.165 24 C 0.001 3.999 25 C -0.109 4.109 26 C -0.171 4.171 27 C 0.006 3.994 28 C 0.000 4.000 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.222 0.778 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.078 0.922 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.390 -15.469 9.552 18.963 hybrid contribution -0.518 1.294 -0.306 1.427 sum 4.871 -14.175 9.246 17.611 Atomic orbital electron populations 1.21608 0.93296 1.00971 1.01875 1.22365 0.95448 0.97445 0.93287 1.21700 0.96471 0.91997 0.88310 1.45317 1.73739 1.08578 1.04310 1.19039 1.22142 0.92839 1.00933 0.90761 1.24838 0.97551 0.98534 0.99369 1.69900 1.27699 1.36986 1.21689 0.86108 0.77528 0.82084 0.80415 1.20462 1.21863 1.21728 1.21936 0.92130 0.81732 0.99195 1.22536 0.96130 0.95427 0.95413 1.21623 0.97557 1.00515 0.98021 1.22553 0.99879 0.97950 0.81769 1.48064 1.15945 1.57545 1.12177 1.16760 0.79502 0.78780 0.84491 1.90717 1.78631 1.55625 1.18641 1.19385 0.95902 1.13852 0.99385 1.24737 0.96629 0.94185 0.95360 1.77232 1.01156 1.24816 1.06344 1.50110 1.13217 1.38359 1.14826 1.22414 0.92537 0.92020 0.92882 1.20989 0.94153 1.00305 0.95413 1.22862 1.00598 1.00011 0.93648 1.22444 0.79244 1.03023 0.94738 1.22045 0.85953 0.95150 0.96875 0.93046 0.93228 0.91410 0.93528 0.95988 0.93787 0.96081 0.89372 0.93481 0.91509 0.92957 0.89817 0.91911 0.77812 0.87664 0.87990 0.89302 0.87739 0.88705 0.88924 0.92169 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 7.53 37.16 0.28 -1.46 16 2 C -0.08 -1.41 1.08 -152.18 -0.16 -1.57 16 3 C 0.14 3.00 6.32 -2.47 -0.02 2.98 16 4 N -0.60 -14.94 3.41 -167.45 -0.57 -15.51 16 5 C -0.22 -6.08 10.35 -15.06 -0.16 -6.24 16 6 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 7 C -0.01 -0.17 5.41 -17.43 -0.09 -0.27 16 8 N -0.92 -26.62 10.82 55.49 0.60 -26.02 16 9 Si 0.91 21.93 29.56 -169.99 -5.03 16.91 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.18 4.06 5.03 -1.42 -0.01 4.05 16 14 C -0.09 -1.62 1.06 -152.33 -0.16 -1.78 16 15 C -0.12 -1.83 7.45 37.16 0.28 -1.56 16 16 C 0.10 1.57 4.29 -3.26 -0.01 1.55 16 17 N -0.61 -10.22 3.32 -172.71 -0.57 -10.79 16 18 C 0.61 11.10 7.86 -12.52 -0.10 11.00 16 19 O -0.56 -11.26 17.12 5.28 0.09 -11.17 16 20 C -0.27 -4.38 6.05 -105.04 -0.64 -5.02 16 21 C 0.08 1.16 10.28 -17.09 -0.18 0.99 16 22 N -0.28 -4.25 12.64 30.81 0.39 -3.86 16 23 N -0.39 -5.06 4.81 -55.13 -0.27 -5.32 16 24 C 0.14 1.89 7.32 -81.30 -0.59 1.30 16 25 C -0.07 -0.68 6.86 -26.72 -0.18 -0.86 16 26 C -0.13 -0.77 7.18 -25.19 -0.18 -0.95 16 27 C 0.13 0.99 7.78 -2.91 -0.02 0.96 16 28 C 0.12 1.98 5.99 -3.11 -0.02 1.96 16 29 H 0.05 0.64 7.09 -51.93 -0.37 0.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.08 7.17 -51.93 -0.37 0.71 16 32 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.02 0.51 7.55 -51.93 -0.39 0.12 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 36 H 0.09 2.26 6.32 -51.93 -0.33 1.94 16 37 H 0.05 0.60 7.10 -51.93 -0.37 0.23 16 38 H 0.07 1.14 7.16 -51.93 -0.37 0.77 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.32 4.77 -51.93 -0.25 1.07 16 41 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 42 H 0.21 2.63 5.01 -52.49 -0.26 2.37 16 43 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 50 H 0.08 1.35 7.34 -51.93 -0.38 0.97 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -34.94 382.75 -9.19 -44.13 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.64 Total: 0.79 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.97 Total: 5.09 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.42 Total: -61.51 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.94 -9.19 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982293621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.059 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds