Wall clock time and date at job start Wed Apr 1 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.54312 * 112.07882 * 2 1 4 4 N 1.48105 * 104.71282 * 262.03392 * 3 2 1 5 5 C 1.36936 * 127.84124 * 140.24014 * 4 3 2 6 6 H 1.07997 * 120.00572 * 344.86206 * 5 4 3 7 7 C 1.38813 * 119.99859 * 164.85962 * 5 4 3 8 8 N 1.31619 * 120.00296 * 351.29911 * 7 5 4 9 9 Si 1.86804 * 119.99892 * 171.29835 * 7 5 4 10 10 H 1.48497 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47367 * 120.00096 * 9 7 5 12 12 H 1.48509 * 109.47078 * 239.99898 * 9 7 5 13 13 C 1.49975 * 104.94071 * 320.71671 * 4 3 2 14 14 C 1.54309 * 103.81627 * 38.69690 * 13 4 3 15 15 C 1.53002 * 112.07703 * 99.66001 * 14 13 4 16 16 C 1.53760 * 109.08061 * 224.36351 * 14 13 4 17 17 N 1.47204 * 106.40891 * 94.29094 * 16 14 13 18 18 C 1.34774 * 126.70414 * 211.29932 * 17 16 14 19 19 O 1.21597 * 120.00260 * 174.25446 * 18 17 16 20 20 C 1.47433 * 119.99793 * 353.97698 * 18 17 16 21 21 C 1.41201 * 126.44170 * 353.17134 * 20 18 17 22 22 N 1.30279 * 108.03203 * 179.97438 * 21 20 18 23 23 N 1.40509 * 109.02056 * 359.91783 * 22 21 20 24 24 C 1.34023 * 108.16418 * 359.90592 * 23 22 21 25 25 C 1.51397 * 110.33856 * 179.44798 * 24 23 22 26 26 C 1.54565 * 104.21281 * 343.97945 * 25 24 23 27 27 C 1.47256 * 140.82105 * 180.28124 * 23 22 21 28 28 C 1.47207 * 106.59260 * 31.55746 * 17 16 14 29 29 H 1.08992 * 109.47182 * 177.58798 * 1 2 3 30 30 H 1.08994 * 109.46987 * 297.59421 * 1 2 3 31 31 H 1.09000 * 109.46562 * 57.59090 * 1 2 3 32 32 H 1.08994 * 110.39052 * 20.84936 * 3 2 1 33 33 H 1.09007 * 110.38582 * 143.22526 * 3 2 1 34 34 H 0.96993 * 120.00106 * 180.02562 * 8 7 5 35 35 H 1.09007 * 110.28881 * 280.43996 * 13 4 3 36 36 H 1.09004 * 111.35431 * 157.46997 * 13 4 3 37 37 H 1.09004 * 109.46939 * 182.01125 * 15 14 13 38 38 H 1.08997 * 109.47472 * 302.01708 * 15 14 13 39 39 H 1.08999 * 109.46598 * 62.01921 * 15 14 13 40 40 H 1.09002 * 110.06599 * 335.05054 * 16 14 13 41 41 H 1.09005 * 110.11325 * 213.55020 * 16 14 13 42 42 H 1.07998 * 125.98203 * 359.97438 * 21 20 18 43 43 H 1.09002 * 110.65576 * 225.20006 * 25 24 23 44 44 H 1.08996 * 110.38892 * 102.62791 * 25 24 23 45 45 H 1.09003 * 110.99562 * 266.70061 * 26 25 24 46 46 H 1.09003 * 111.02713 * 142.89305 * 26 25 24 47 47 H 1.09002 * 110.22984 * 316.07331 * 27 23 22 48 48 H 1.09003 * 110.22661 * 78.02921 * 27 23 22 49 49 H 1.08997 * 110.06615 * 87.68362 * 28 17 16 50 50 H 1.08998 * 110.06901 * 209.20835 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4300 0.0000 4 7 2.4354 1.7039 -1.4187 5 6 2.2603 2.8728 -2.1101 6 1 1.6265 3.6489 -1.7072 7 6 2.8976 3.0604 -3.3290 8 7 3.8004 2.1951 -3.7396 9 14 2.4739 4.5408 -4.3864 10 1 1.4357 5.3550 -3.7050 11 1 3.6916 5.3648 -4.5953 12 1 1.9572 4.0793 -5.7000 13 6 2.9912 0.4138 -1.9440 14 6 2.1157 -0.6651 -1.2727 15 6 1.0222 -1.1830 -2.2092 16 6 3.0197 -1.7974 -0.7581 17 7 3.3081 -1.4909 0.6525 18 6 4.4322 -1.7973 1.3298 19 8 4.5863 -1.3937 2.4665 20 6 5.4725 -2.6269 0.6948 21 6 5.3781 -3.2806 -0.5532 22 7 6.4990 -3.9099 -0.7646 23 7 7.3592 -3.6917 0.3247 24 6 6.7256 -2.9063 1.2067 25 6 7.6065 -2.6500 2.4110 26 6 8.7077 -3.7301 2.3124 27 6 8.7100 -4.0359 0.7993 28 6 2.1262 -0.7900 1.1804 29 1 -0.3633 -1.0267 -0.0432 30 1 -0.3633 0.4760 0.9107 31 1 -0.3632 0.5508 -0.8676 32 1 1.3681 2.1407 0.3636 33 1 3.0112 1.4742 0.6117 34 1 4.2460 2.3263 -4.5911 35 1 4.0324 0.2999 -1.6420 36 1 2.9009 0.3552 -3.0287 37 1 0.4091 -1.9143 -1.6824 38 1 0.3973 -0.3509 -2.5334 39 1 1.4814 -1.6530 -3.0788 40 1 3.9462 -1.8262 -1.3317 41 1 2.5028 -2.7540 -0.8349 42 1 4.5258 -3.2620 -1.2163 43 1 7.0390 -2.7667 3.3343 44 1 8.0438 -1.6531 2.3563 45 1 8.4392 -4.6153 2.8892 46 1 9.6721 -3.3358 2.6326 47 1 8.9114 -5.0935 0.6287 48 1 9.4552 -3.4230 0.2921 49 1 1.4002 -1.5113 1.5556 50 1 2.4212 -0.1068 1.9768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982293621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:29 Heat of formation + Delta-G solvation = 75.824711 kcal Electronic energy + Delta-G solvation = -31808.215479 eV Core-core repulsion = 27837.686846 eV Total energy + Delta-G solvation = -3970.528633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.94088 -41.64982 -39.47349 -37.37286 -36.40848 -34.54140 -33.13809 -32.54134 -31.94252 -30.48952 -28.97816 -28.29510 -27.27515 -26.75261 -26.39776 -24.17791 -23.23520 -22.62818 -21.75754 -21.41142 -20.12644 -19.20117 -18.69745 -18.10571 -17.45196 -16.81170 -16.67926 -16.56424 -16.12181 -15.69160 -15.46291 -15.31458 -15.08202 -14.78818 -14.67923 -14.58098 -14.42886 -14.13036 -14.04985 -13.39941 -13.35933 -13.28334 -13.15298 -12.97607 -12.86844 -12.73022 -12.53559 -12.50777 -12.44518 -12.14164 -12.06313 -12.01784 -11.88210 -11.73866 -11.40240 -11.15758 -11.09295 -10.91365 -10.69321 -10.37390 -9.86478 -9.48701 -8.84893 -7.87742 -5.23171 0.44606 1.05604 1.21636 1.45775 1.46042 1.56837 2.03239 2.39154 2.49122 3.03224 3.30690 3.36691 3.46143 3.49266 3.65495 3.83519 3.88685 3.92530 3.98773 4.10276 4.15352 4.27049 4.32442 4.40273 4.45694 4.50401 4.51305 4.59044 4.65457 4.76141 4.81141 4.82656 4.87741 4.92865 4.96702 4.99002 5.05850 5.10680 5.13976 5.27753 5.30058 5.33183 5.38386 5.43232 5.49196 5.54232 5.64755 5.68594 5.81340 6.19589 6.51512 6.59546 7.02671 7.19415 7.70705 8.50579 9.25434 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.003428 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.440746 B = 8165.343553 C = 9067.392391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C 0.139 3.861 4 N -0.618 5.618 5 C -0.234 4.234 6 H 0.076 0.924 7 C -0.060 4.060 8 N -0.947 5.947 9 Si 0.974 3.026 10 H -0.266 1.266 11 H -0.297 1.297 12 H -0.288 1.288 13 C 0.185 3.815 14 C -0.084 4.084 15 C -0.113 4.113 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.608 3.392 19 O -0.589 6.589 20 C -0.308 4.308 21 C 0.077 3.923 22 N -0.304 5.304 23 N -0.383 5.383 24 C 0.129 3.871 25 C -0.075 4.075 26 C -0.112 4.112 27 C 0.111 3.889 28 C 0.125 3.875 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.051 0.949 33 H -0.005 1.005 34 H 0.247 0.753 35 H -0.019 1.019 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.218 0.782 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.139 0.861 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -16.819 10.953 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C 0.013 3.987 4 N -0.342 5.342 5 C -0.363 4.363 6 H 0.094 0.906 7 C -0.254 4.254 8 N -0.595 5.595 9 Si 0.803 3.197 10 H -0.191 1.191 11 H -0.224 1.224 12 H -0.215 1.215 13 C 0.060 3.940 14 C -0.086 4.086 15 C -0.170 4.170 16 C -0.016 4.016 17 N -0.341 5.341 18 C 0.400 3.600 19 O -0.472 6.472 20 C -0.323 4.323 21 C -0.109 4.109 22 N -0.123 5.123 23 N -0.162 5.162 24 C -0.007 4.007 25 C -0.113 4.113 26 C -0.150 4.150 27 C -0.007 4.007 28 C 0.002 3.998 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.013 0.987 34 H 0.056 0.944 35 H -0.001 1.001 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.234 0.766 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.158 0.842 47 H 0.133 0.867 48 H 0.124 0.876 49 H 0.113 0.887 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.757 -17.402 10.446 20.846 hybrid contribution -0.200 1.946 -0.530 2.027 sum 4.557 -15.456 9.916 18.920 Atomic orbital electron populations 1.21580 0.90503 1.03020 1.01957 1.22287 0.97378 0.94229 0.93420 1.21824 0.95641 0.95295 0.85938 1.45630 1.73742 1.08766 1.06028 1.19388 1.21761 0.93831 1.01311 0.90634 1.25627 0.97730 1.01366 1.00640 1.70103 1.28878 1.38742 1.21778 0.85077 0.77152 0.78891 0.78596 1.19051 1.22402 1.21491 1.21705 0.91284 0.83306 0.97706 1.22407 0.96192 0.94425 0.95608 1.21583 0.96736 1.00644 0.98060 1.22599 0.99494 0.98749 0.80785 1.48155 1.15963 1.57316 1.12662 1.17093 0.79911 0.78719 0.84282 1.90675 1.79309 1.57193 1.20015 1.19493 0.96853 1.15386 1.00568 1.24911 0.97090 0.93772 0.95117 1.77115 1.01697 1.25607 1.07835 1.50582 1.14445 1.37441 1.13780 1.23082 0.92283 0.91089 0.94248 1.21197 0.94709 1.01949 0.93492 1.22928 1.00678 0.99181 0.92197 1.22996 0.76999 1.04640 0.96106 1.22092 0.86343 0.95550 0.95822 0.89768 0.91701 0.93024 0.93038 0.98729 0.94363 1.00121 0.92421 0.89467 0.93452 0.92445 0.90761 0.87685 0.76641 0.87882 0.87791 0.87839 0.84246 0.86697 0.87607 0.88689 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.95 7.53 71.98 0.54 -2.41 16 2 C -0.07 -2.34 1.08 -50.67 -0.05 -2.40 16 3 C 0.14 6.04 6.32 86.52 0.55 6.59 16 4 N -0.62 -32.22 3.41 -683.70 -2.33 -34.55 16 5 C -0.23 -13.27 10.35 84.03 0.87 -12.40 16 6 H 0.08 4.15 7.84 -2.91 -0.02 4.13 16 7 C -0.06 -3.44 5.41 84.86 0.46 -2.98 16 8 N -0.95 -57.39 10.82 21.65 0.23 -57.15 16 9 Si 0.97 46.10 29.56 68.60 2.03 48.13 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 13 C 0.19 8.97 5.03 86.15 0.43 9.41 16 14 C -0.08 -2.89 1.06 -50.77 -0.05 -2.95 16 15 C -0.11 -3.22 7.45 71.98 0.54 -2.68 16 16 C 0.11 3.18 4.29 86.50 0.37 3.55 16 17 N -0.61 -20.45 3.32 -818.59 -2.72 -23.16 16 18 C 0.61 22.44 7.86 86.67 0.68 23.12 16 19 O -0.59 -24.56 17.12 -4.02 -0.07 -24.63 16 20 C -0.31 -10.17 6.05 -20.13 -0.12 -10.29 16 21 C 0.08 2.34 10.28 85.65 0.88 3.22 16 22 N -0.30 -9.28 12.64 -56.42 -0.71 -9.99 16 23 N -0.38 -9.74 4.81 -328.33 -1.58 -11.32 16 24 C 0.13 3.59 7.32 42.44 0.31 3.90 16 25 C -0.07 -1.37 6.86 30.60 0.21 -1.16 16 26 C -0.11 -0.95 7.18 31.59 0.23 -0.72 16 27 C 0.11 1.47 7.78 86.70 0.67 2.14 16 28 C 0.12 3.87 5.99 86.60 0.52 4.39 16 29 H 0.08 1.68 7.09 -2.39 -0.02 1.66 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.54 7.17 -2.39 -0.02 1.52 16 32 H 0.05 2.14 7.90 -2.39 -0.02 2.12 16 33 H -0.01 -0.25 7.55 -2.38 -0.02 -0.26 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H -0.02 -1.06 7.51 -2.38 -0.02 -1.08 16 36 H 0.06 3.12 6.32 -2.38 -0.02 3.11 16 37 H 0.09 1.82 7.10 -2.39 -0.02 1.80 16 38 H 0.05 1.55 7.16 -2.39 -0.02 1.53 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 2.39 4.77 -2.39 -0.01 2.38 16 41 H 0.11 2.32 7.78 -2.38 -0.02 2.30 16 42 H 0.22 5.54 5.01 -2.91 -0.01 5.53 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.10 2.35 7.93 -2.39 -0.02 2.33 16 50 H 0.06 2.12 7.34 -2.39 -0.02 2.10 16 Total: -1.00 -81.74 382.75 2.84 -78.91 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.95 Total: 15.44 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 7.03 Total: 18.33 kcal Atomic # 7 Polarization: -129.07 SS G_CDS: -7.11 Total: -136.18 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -81.74 2.84 -78.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982293621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.731 kcal (2) G-P(sol) polarization free energy of solvation -81.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds