Wall clock time and date at job start Wed Apr 1 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06485 * 2 1 4 4 N 1.47200 * 106.40470 * 217.90227 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29542 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47206 * 106.59316 * 31.56290 * 4 3 2 14 14 C 1.54032 * 106.26666 * 328.37046 * 13 4 3 15 15 C 1.52994 * 112.77347 * 141.67274 * 14 13 4 16 16 C 1.54319 * 109.25342 * 267.01388 * 14 13 4 17 17 N 1.48114 * 104.71151 * 88.38048 * 16 14 13 18 18 C 1.34775 * 127.84317 * 219.77963 * 17 16 14 19 19 O 1.21568 * 120.00003 * 180.02562 * 18 17 16 20 20 C 1.47711 * 120.00037 * 0.02562 * 18 17 16 21 21 C 1.41399 * 126.51111 * 179.97438 * 20 18 17 22 22 C 1.35444 * 105.43571 * 180.02562 * 21 20 18 23 23 N 1.34868 * 107.67829 * 359.78912 * 22 21 20 24 24 N 1.29367 * 109.58255 * 0.02562 * 23 22 21 25 25 C 1.47455 * 110.69961 * 180.35173 * 23 22 21 26 26 C 1.54319 * 105.62643 * 342.72553 * 25 23 22 27 27 C 1.51342 * 141.96614 * 179.73006 * 22 21 20 28 28 C 1.48116 * 104.31019 * 39.78297 * 17 16 14 29 29 H 1.09008 * 109.47132 * 58.97907 * 1 2 3 30 30 H 1.09000 * 109.47484 * 178.98534 * 1 2 3 31 31 H 1.09001 * 109.46577 * 298.98459 * 1 2 3 32 32 H 1.09008 * 110.06527 * 98.67353 * 3 2 1 33 33 H 1.09000 * 110.07683 * 337.14461 * 3 2 1 34 34 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.06738 * 87.68752 * 13 4 3 36 36 H 1.09000 * 110.06826 * 209.20691 * 13 4 3 37 37 H 1.08997 * 109.47368 * 301.38776 * 15 14 13 38 38 H 1.09006 * 109.46616 * 61.38295 * 15 14 13 39 39 H 1.08997 * 109.47115 * 181.37965 * 15 14 13 40 40 H 1.09001 * 110.38896 * 329.57147 * 16 14 13 41 41 H 1.09007 * 110.48496 * 207.23535 * 16 14 13 42 42 H 1.08001 * 127.28093 * 0.05212 * 21 20 18 43 43 H 1.08997 * 110.21372 * 223.68769 * 25 23 22 44 44 H 1.08997 * 110.21787 * 101.76458 * 25 23 22 45 45 H 1.09001 * 110.97247 * 267.76020 * 26 25 23 46 46 H 1.09006 * 110.96841 * 144.00973 * 26 25 23 47 47 H 1.08991 * 110.49504 * 315.23480 * 27 22 21 48 48 H 1.08998 * 110.48896 * 77.77054 * 27 22 21 49 49 H 1.08999 * 110.38050 * 201.41249 * 28 17 16 50 50 H 1.08993 * 110.38752 * 79.03362 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4264 2.1542 -0.7370 6 1 5.3214 1.8907 -1.2812 7 6 4.4215 3.2655 0.0945 8 7 3.2904 3.6945 0.6132 9 14 6.0204 4.1525 0.4776 10 1 6.2496 5.2176 -0.5315 11 1 5.9372 4.7611 1.8296 12 1 7.1453 3.1838 0.4391 13 6 3.0306 0.3833 -1.9064 14 6 2.1377 -0.6869 -1.2506 15 6 1.0607 -1.2208 -2.1971 16 6 3.0265 -1.8158 -0.6875 17 7 3.3640 -1.3787 0.6868 18 6 4.5443 -1.4990 1.3263 19 8 4.6640 -1.0872 2.4639 20 6 5.6923 -2.1311 0.6450 21 6 6.9856 -2.3270 1.1821 22 6 7.6941 -2.9377 0.2025 23 7 6.8733 -3.1019 -0.8550 24 7 5.7040 -2.6247 -0.5746 25 6 7.5786 -3.7721 -1.9630 26 6 9.0821 -3.6275 -1.6467 27 6 9.0689 -3.4892 -0.1075 28 6 2.1099 -0.7795 1.1988 29 1 -0.3634 0.5296 -0.8807 30 1 -0.3634 -1.0275 -0.0182 31 1 -0.3632 0.4980 0.8990 32 1 2.3912 1.7136 1.0122 33 1 1.3739 2.1261 -0.3976 34 1 3.2870 4.4714 1.1940 35 1 2.5121 0.8417 -2.7486 36 1 3.9663 -0.0642 -2.2415 37 1 0.4330 -0.3963 -2.5352 38 1 1.5350 -1.6929 -3.0576 39 1 0.4472 -1.9535 -1.6730 40 1 3.9316 -1.9207 -1.2857 41 1 2.4773 -2.7571 -0.6625 42 1 7.3345 -2.0489 2.1657 43 1 7.3439 -3.2839 -2.9089 44 1 7.3018 -4.8256 -2.0033 45 1 9.4951 -2.7341 -2.1151 46 1 9.6326 -4.5168 -1.9537 47 1 9.8417 -2.7938 0.2198 48 1 9.2058 -4.4612 0.3662 49 1 2.3230 -0.1016 2.0254 50 1 1.4178 -1.5597 1.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982293726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:14 Heat of formation + Delta-G solvation = 97.388037 kcal Electronic energy + Delta-G solvation = -32462.010142 eV Core-core repulsion = 28492.416564 eV Total energy + Delta-G solvation = -3969.593577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.72956 -40.14856 -38.01354 -36.37551 -34.53325 -32.82997 -31.72112 -31.59499 -30.58868 -29.44248 -27.37347 -26.63732 -25.83608 -25.57256 -24.80239 -23.08267 -22.03506 -21.48239 -20.59052 -19.78700 -18.64893 -17.65447 -17.03088 -16.73520 -16.22789 -15.85805 -15.43080 -15.12690 -14.59126 -14.44579 -14.01941 -13.75789 -13.59740 -13.40104 -13.34950 -13.23387 -13.03356 -12.87638 -12.64055 -12.36232 -12.02014 -11.95079 -11.91941 -11.63336 -11.43745 -11.42553 -11.31174 -11.27372 -10.76665 -10.71864 -10.63555 -10.25538 -9.95394 -9.93071 -9.67744 -9.55256 -9.54479 -9.40556 -8.91261 -8.78813 -8.52789 -8.03452 -6.65657 -5.65081 -2.96422 1.86470 2.28429 2.36503 3.45126 3.46821 3.53320 3.55666 3.83585 3.94469 4.27084 4.39127 4.57224 4.60394 4.79556 4.96317 5.04252 5.08902 5.13038 5.25473 5.32650 5.44878 5.47498 5.56228 5.59246 5.61088 5.67128 5.76943 5.80916 5.84996 5.93886 6.04512 6.10397 6.14010 6.19864 6.24045 6.26342 6.40637 6.46807 6.52507 6.60068 6.63360 6.65971 6.80757 6.89371 6.96248 7.10625 7.52041 7.69122 7.87170 8.09505 8.20910 8.38796 8.74888 9.29440 9.92054 10.64513 11.49128 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.005048 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.172105 B = 5545.075772 C = 7066.673516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.099 4.099 3 C 0.182 3.818 4 N -0.587 5.587 5 C -0.219 4.219 6 H 0.068 0.932 7 C -0.002 4.002 8 N -0.915 5.915 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.282 1.282 13 C 0.148 3.852 14 C -0.087 4.087 15 C -0.122 4.122 16 C 0.114 3.886 17 N -0.592 5.592 18 C 0.630 3.370 19 O -0.537 6.537 20 C 0.013 3.987 21 C -0.164 4.164 22 C -0.014 4.014 23 N -0.314 5.314 24 N -0.240 5.240 25 C 0.124 3.876 26 C -0.132 4.132 27 C -0.057 4.057 28 C 0.126 3.874 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.252 0.748 35 H 0.015 0.985 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.158 0.842 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -18.875 -5.963 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 C 0.057 3.943 4 N -0.311 5.311 5 C -0.348 4.348 6 H 0.086 0.914 7 C -0.199 4.199 8 N -0.562 5.562 9 Si 0.735 3.265 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.208 1.208 13 C 0.022 3.978 14 C -0.089 4.089 15 C -0.180 4.180 16 C -0.009 4.009 17 N -0.323 5.323 18 C 0.417 3.583 19 O -0.412 6.412 20 C -0.148 4.148 21 C -0.192 4.192 22 C -0.139 4.139 23 N -0.102 5.102 24 N -0.074 5.074 25 C 0.004 3.996 26 C -0.170 4.170 27 C -0.096 4.096 28 C 0.004 3.996 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.176 0.824 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.120 0.880 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.291 -18.662 -6.292 20.156 hybrid contribution 1.283 0.762 0.775 1.681 sum 5.573 -17.900 -5.518 19.543 Atomic orbital electron populations 1.21580 0.93662 1.00662 1.01919 1.22581 0.94677 0.99709 0.93177 1.21185 0.87789 0.88020 0.97342 1.44268 1.16417 1.42888 1.27488 1.18840 0.88109 1.03619 1.24217 0.91393 1.24770 0.96800 0.97161 1.01171 1.69915 1.23674 1.26100 1.36462 0.86227 0.83267 0.79453 0.77515 1.21714 1.21516 1.20761 1.21349 0.95310 0.89539 0.91644 1.22376 0.95361 0.95624 0.95575 1.21603 0.97601 1.00573 0.98215 1.22646 0.99870 0.95331 0.83087 1.48312 1.09906 1.58306 1.15762 1.16206 0.79604 0.78026 0.84487 1.90769 1.82459 1.50115 1.17897 1.21848 0.95928 1.05481 0.91523 1.20908 0.92089 1.05425 1.00807 1.22302 0.94881 1.05844 0.90880 1.46907 1.06999 1.42273 1.14056 1.73516 1.03458 1.13893 1.16511 1.22529 0.90937 0.97792 0.88319 1.22774 0.93645 1.04597 0.95978 1.20724 0.91844 1.01866 0.95156 1.22370 0.83773 0.96096 0.97403 0.92217 0.93169 0.92604 0.90687 0.96070 0.93807 0.96692 0.94432 0.92077 0.93041 0.92720 0.88260 0.92476 0.82428 0.88371 0.88726 0.89235 0.87967 0.88821 0.89061 0.89857 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 7.54 37.16 0.28 -1.55 16 2 C -0.10 -1.88 1.08 -152.33 -0.16 -2.04 16 3 C 0.18 4.51 4.68 -3.27 -0.02 4.50 16 4 N -0.59 -15.53 3.38 -171.00 -0.58 -16.10 16 5 C -0.22 -6.45 10.28 -15.06 -0.15 -6.61 16 6 H 0.07 1.99 7.85 -52.48 -0.41 1.58 16 7 C 0.00 -0.06 5.38 -17.43 -0.09 -0.16 16 8 N -0.91 -28.05 10.87 55.49 0.60 -27.44 16 9 Si 0.90 23.68 29.56 -169.99 -5.03 18.66 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 12 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 13 C 0.15 3.23 6.34 -3.12 -0.02 3.21 16 14 C -0.09 -1.54 1.08 -152.18 -0.16 -1.71 16 15 C -0.12 -1.67 7.59 37.15 0.28 -1.39 16 16 C 0.11 2.00 5.71 -2.46 -0.01 1.98 16 17 N -0.59 -12.07 3.31 -170.61 -0.57 -12.63 16 18 C 0.63 14.06 7.92 -12.39 -0.10 13.96 16 19 O -0.54 -13.49 17.19 5.31 0.09 -13.40 16 20 C 0.01 0.25 7.00 -82.91 -0.58 -0.33 16 21 C -0.16 -2.82 10.81 -39.38 -0.43 -3.24 16 22 C -0.01 -0.20 7.47 -81.94 -0.61 -0.81 16 23 N -0.31 -4.37 4.40 -55.55 -0.24 -4.61 16 24 N -0.24 -4.21 9.31 33.36 0.31 -3.90 16 25 C 0.12 1.00 7.78 -2.83 -0.02 0.97 16 26 C -0.13 -0.74 7.16 -25.23 -0.18 -0.92 16 27 C -0.06 -0.45 6.86 -26.76 -0.18 -0.64 16 28 C 0.13 2.44 6.05 -2.47 -0.01 2.43 16 29 H 0.06 0.89 7.20 -51.92 -0.37 0.52 16 30 H 0.05 0.64 7.21 -51.93 -0.37 0.27 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 2.14 6.03 -51.92 -0.31 1.82 16 33 H 0.02 0.56 7.89 -51.93 -0.41 0.15 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.02 0.33 7.93 -51.93 -0.41 -0.08 16 36 H 0.04 0.83 7.40 -51.93 -0.38 0.45 16 37 H 0.06 0.84 7.18 -51.93 -0.37 0.46 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.65 7.21 -51.93 -0.37 0.28 16 40 H 0.10 1.82 4.83 -51.93 -0.25 1.57 16 41 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 42 H 0.16 2.55 8.06 -52.49 -0.42 2.13 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 1.84 7.16 -51.93 -0.37 1.47 16 50 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -37.34 385.42 -9.60 -46.94 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.82 Total: -0.98 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.18 Total: 7.67 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.47 Total: -64.70 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.03 Total: 18.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.34 -9.60 -46.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982293726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.328 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds