Wall clock time and date at job start Wed Apr 1 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06485 * 2 1 4 4 N 1.47200 * 106.40470 * 217.90227 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29542 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47206 * 106.59316 * 31.56290 * 4 3 2 14 14 C 1.54032 * 106.26666 * 328.37046 * 13 4 3 15 15 C 1.52994 * 112.77347 * 141.67274 * 14 13 4 16 16 C 1.54319 * 109.25342 * 267.01388 * 14 13 4 17 17 N 1.48114 * 104.71151 * 88.38048 * 16 14 13 18 18 C 1.34775 * 127.84317 * 219.77963 * 17 16 14 19 19 O 1.21568 * 120.00003 * 180.02562 * 18 17 16 20 20 C 1.47711 * 120.00037 * 0.02562 * 18 17 16 21 21 C 1.41399 * 126.51111 * 179.97438 * 20 18 17 22 22 C 1.35444 * 105.43571 * 180.02562 * 21 20 18 23 23 N 1.34868 * 107.67829 * 359.78912 * 22 21 20 24 24 N 1.29367 * 109.58255 * 0.02562 * 23 22 21 25 25 C 1.47455 * 110.69961 * 180.35173 * 23 22 21 26 26 C 1.54319 * 105.62643 * 342.72553 * 25 23 22 27 27 C 1.51342 * 141.96614 * 179.73006 * 22 21 20 28 28 C 1.48116 * 104.31019 * 39.78297 * 17 16 14 29 29 H 1.09008 * 109.47132 * 58.97907 * 1 2 3 30 30 H 1.09000 * 109.47484 * 178.98534 * 1 2 3 31 31 H 1.09001 * 109.46577 * 298.98459 * 1 2 3 32 32 H 1.09008 * 110.06527 * 98.67353 * 3 2 1 33 33 H 1.09000 * 110.07683 * 337.14461 * 3 2 1 34 34 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.06738 * 87.68752 * 13 4 3 36 36 H 1.09000 * 110.06826 * 209.20691 * 13 4 3 37 37 H 1.08997 * 109.47368 * 301.38776 * 15 14 13 38 38 H 1.09006 * 109.46616 * 61.38295 * 15 14 13 39 39 H 1.08997 * 109.47115 * 181.37965 * 15 14 13 40 40 H 1.09001 * 110.38896 * 329.57147 * 16 14 13 41 41 H 1.09007 * 110.48496 * 207.23535 * 16 14 13 42 42 H 1.08001 * 127.28093 * 0.05212 * 21 20 18 43 43 H 1.08997 * 110.21372 * 223.68769 * 25 23 22 44 44 H 1.08997 * 110.21787 * 101.76458 * 25 23 22 45 45 H 1.09001 * 110.97247 * 267.76020 * 26 25 23 46 46 H 1.09006 * 110.96841 * 144.00973 * 26 25 23 47 47 H 1.08991 * 110.49504 * 315.23480 * 27 22 21 48 48 H 1.08998 * 110.48896 * 77.77054 * 27 22 21 49 49 H 1.08999 * 110.38050 * 201.41249 * 28 17 16 50 50 H 1.08993 * 110.38752 * 79.03362 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4264 2.1542 -0.7370 6 1 5.3214 1.8907 -1.2812 7 6 4.4215 3.2655 0.0945 8 7 3.2904 3.6945 0.6132 9 14 6.0204 4.1525 0.4776 10 1 6.2496 5.2176 -0.5315 11 1 5.9372 4.7611 1.8296 12 1 7.1453 3.1838 0.4391 13 6 3.0306 0.3833 -1.9064 14 6 2.1377 -0.6869 -1.2506 15 6 1.0607 -1.2208 -2.1971 16 6 3.0265 -1.8158 -0.6875 17 7 3.3640 -1.3787 0.6868 18 6 4.5443 -1.4990 1.3263 19 8 4.6640 -1.0872 2.4639 20 6 5.6923 -2.1311 0.6450 21 6 6.9856 -2.3270 1.1821 22 6 7.6941 -2.9377 0.2025 23 7 6.8733 -3.1019 -0.8550 24 7 5.7040 -2.6247 -0.5746 25 6 7.5786 -3.7721 -1.9630 26 6 9.0821 -3.6275 -1.6467 27 6 9.0689 -3.4892 -0.1075 28 6 2.1099 -0.7795 1.1988 29 1 -0.3634 0.5296 -0.8807 30 1 -0.3634 -1.0275 -0.0182 31 1 -0.3632 0.4980 0.8990 32 1 2.3912 1.7136 1.0122 33 1 1.3739 2.1261 -0.3976 34 1 3.2870 4.4714 1.1940 35 1 2.5121 0.8417 -2.7486 36 1 3.9663 -0.0642 -2.2415 37 1 0.4330 -0.3963 -2.5352 38 1 1.5350 -1.6929 -3.0576 39 1 0.4472 -1.9535 -1.6730 40 1 3.9316 -1.9207 -1.2857 41 1 2.4773 -2.7571 -0.6625 42 1 7.3345 -2.0489 2.1657 43 1 7.3439 -3.2839 -2.9089 44 1 7.3018 -4.8256 -2.0033 45 1 9.4951 -2.7341 -2.1151 46 1 9.6326 -4.5168 -1.9537 47 1 9.8417 -2.7938 0.2198 48 1 9.2058 -4.4612 0.3662 49 1 2.3230 -0.1016 2.0254 50 1 1.4178 -1.5597 1.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982293726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:13 Heat of formation + Delta-G solvation = 71.521533 kcal Electronic energy + Delta-G solvation = -32463.131797 eV Core-core repulsion = 28492.416564 eV Total energy + Delta-G solvation = -3970.715233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.86601 -41.74176 -39.66176 -37.26984 -36.45231 -34.60665 -33.22451 -32.72427 -32.53345 -30.51308 -28.41068 -28.17422 -27.55310 -26.90289 -26.55387 -24.51316 -23.57644 -22.41142 -21.85218 -21.41672 -20.13877 -19.26032 -18.73638 -17.92802 -17.53022 -17.21400 -16.94275 -16.85107 -16.43891 -15.67118 -15.60130 -15.09492 -14.94565 -14.88652 -14.65774 -14.42528 -14.29254 -14.04768 -13.96895 -13.72646 -13.67584 -13.36879 -13.10638 -13.02949 -12.87831 -12.81148 -12.56644 -12.50688 -12.47263 -12.20471 -11.98523 -11.97544 -11.85847 -11.71287 -11.46293 -11.19503 -11.16586 -11.04379 -10.73557 -10.12973 -9.94309 -9.63271 -8.82617 -7.94754 -5.26544 0.50792 1.07809 1.30723 1.36241 1.38599 1.43007 2.00026 2.37913 2.41326 3.11158 3.24519 3.31313 3.50387 3.59778 3.68982 3.71757 3.89515 3.92663 4.05091 4.14756 4.22357 4.33939 4.40771 4.41532 4.55071 4.59431 4.61583 4.66719 4.74277 4.81108 4.84077 4.85018 4.88505 4.90854 4.97089 5.01489 5.07926 5.13078 5.15627 5.22337 5.24826 5.32381 5.39847 5.41852 5.45113 5.51054 5.62315 5.72126 5.80570 6.18866 6.54293 6.90373 7.03783 7.15805 7.72799 8.44205 9.17984 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.005048 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.172105 B = 5545.075772 C = 7066.673516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C 0.193 3.807 4 N -0.610 5.610 5 C -0.229 4.229 6 H 0.061 0.939 7 C -0.058 4.058 8 N -0.941 5.941 9 Si 0.963 3.037 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.144 3.856 14 C -0.074 4.074 15 C -0.115 4.115 16 C 0.116 3.884 17 N -0.597 5.597 18 C 0.615 3.385 19 O -0.589 6.589 20 C -0.026 4.026 21 C -0.205 4.205 22 C 0.001 3.999 23 N -0.308 5.308 24 N -0.250 5.250 25 C 0.106 3.894 26 C -0.116 4.116 27 C -0.057 4.057 28 C 0.123 3.877 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.024 0.976 33 H -0.005 1.005 34 H 0.247 0.753 35 H 0.019 0.981 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.150 0.850 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.147 0.853 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.040 0.960 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -22.538 -8.807 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C 0.067 3.933 4 N -0.333 5.333 5 C -0.359 4.359 6 H 0.079 0.921 7 C -0.252 4.252 8 N -0.589 5.589 9 Si 0.792 3.208 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.019 3.981 14 C -0.076 4.076 15 C -0.173 4.173 16 C -0.006 4.006 17 N -0.327 5.327 18 C 0.403 3.597 19 O -0.468 6.468 20 C -0.185 4.185 21 C -0.234 4.234 22 C -0.125 4.125 23 N -0.098 5.098 24 N -0.086 5.086 25 C -0.010 4.010 26 C -0.154 4.154 27 C -0.095 4.095 28 C 0.001 3.999 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.167 0.833 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.108 0.892 46 H 0.165 0.835 47 H 0.121 0.879 48 H 0.137 0.863 49 H 0.059 0.941 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.889 -22.359 -9.213 24.672 hybrid contribution 1.192 1.852 1.559 2.698 sum 6.081 -20.507 -7.654 22.718 Atomic orbital electron populations 1.21581 0.90023 1.03349 1.02164 1.22491 0.97254 0.95423 0.93835 1.20959 0.86856 0.91498 0.93999 1.44510 1.16029 1.43432 1.29356 1.19065 0.89131 1.03882 1.23817 0.92131 1.25528 0.99749 0.98362 1.01586 1.70102 1.25337 1.26374 1.37105 0.85315 0.79750 0.78534 0.77247 1.20032 1.21895 1.20719 1.21564 0.96006 0.89570 0.91001 1.22366 0.95714 0.94210 0.95285 1.21613 0.96348 1.01345 0.97963 1.22824 0.99960 0.96554 0.81260 1.48515 1.09630 1.57655 1.16916 1.16777 0.80777 0.77809 0.84328 1.90704 1.83502 1.52542 1.20090 1.21610 0.95998 1.07902 0.92986 1.21052 0.92346 1.08003 1.01973 1.23014 0.97128 1.03070 0.89251 1.47618 1.06008 1.40542 1.15584 1.73358 1.05532 1.14343 1.15371 1.23207 0.91952 0.98982 0.86897 1.22889 0.92041 1.06809 0.93709 1.21038 0.88199 1.03021 0.97242 1.22455 0.84436 0.96624 0.96389 0.91655 0.89072 0.92893 0.95732 0.98671 0.94415 0.96289 0.95263 0.91877 0.91147 0.89587 0.89038 0.88721 0.83256 0.87559 0.85738 0.89244 0.83523 0.87859 0.86286 0.94124 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.18 7.54 71.98 0.54 -2.63 16 2 C -0.09 -3.31 1.08 -50.77 -0.05 -3.36 16 3 C 0.19 10.07 4.68 86.50 0.41 10.48 16 4 N -0.61 -33.74 3.38 -694.93 -2.35 -36.09 16 5 C -0.23 -14.19 10.28 84.03 0.86 -13.33 16 6 H 0.06 3.73 7.85 -2.91 -0.02 3.71 16 7 C -0.06 -3.65 5.38 84.86 0.46 -3.20 16 8 N -0.94 -61.14 10.87 21.65 0.24 -60.91 16 9 Si 0.96 50.88 29.56 68.60 2.03 52.91 16 10 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 12 H -0.28 -14.68 7.11 99.48 0.71 -13.98 16 13 C 0.14 6.32 6.34 86.59 0.55 6.87 16 14 C -0.07 -2.48 1.08 -50.67 -0.05 -2.54 16 15 C -0.12 -2.63 7.59 71.98 0.55 -2.08 16 16 C 0.12 3.90 5.71 86.52 0.49 4.39 16 17 N -0.60 -25.03 3.31 -811.96 -2.69 -27.72 16 18 C 0.61 29.28 7.92 86.75 0.69 29.96 16 19 O -0.59 -32.32 17.19 -3.93 -0.07 -32.38 16 20 C -0.03 -1.09 7.00 42.47 0.30 -0.80 16 21 C -0.21 -7.42 10.81 22.40 0.24 -7.17 16 22 C 0.00 0.04 7.47 41.65 0.31 0.35 16 23 N -0.31 -8.07 4.40 -329.67 -1.45 -9.52 16 24 N -0.25 -8.78 9.31 -48.36 -0.45 -9.23 16 25 C 0.11 1.30 7.78 86.64 0.67 1.98 16 26 C -0.12 -0.74 7.16 31.57 0.23 -0.52 16 27 C -0.06 -0.69 6.86 30.58 0.21 -0.48 16 28 C 0.12 4.88 6.05 86.51 0.52 5.41 16 29 H 0.06 1.78 7.20 -2.38 -0.02 1.77 16 30 H 0.09 1.86 7.21 -2.39 -0.02 1.84 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.02 1.51 6.03 -2.38 -0.01 1.49 16 33 H 0.00 -0.26 7.89 -2.39 -0.02 -0.28 16 34 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.02 0.83 7.93 -2.38 -0.02 0.81 16 36 H 0.03 1.31 7.40 -2.39 -0.02 1.29 16 37 H 0.06 1.46 7.18 -2.39 -0.02 1.45 16 38 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.09 1.50 7.21 -2.39 -0.02 1.48 16 40 H 0.09 3.28 4.83 -2.39 -0.01 3.27 16 41 H 0.09 2.52 7.96 -2.38 -0.02 2.50 16 42 H 0.15 5.35 8.06 -2.91 -0.02 5.33 16 43 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.15 -0.24 8.14 -2.38 -0.02 -0.26 16 47 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.04 1.94 7.16 -2.39 -0.02 1.93 16 50 H 0.10 3.12 7.97 -2.39 -0.02 3.10 16 Total: -1.00 -92.76 385.42 3.12 -89.64 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.94 Total: 9.99 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 6.92 Total: 23.33 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -6.71 Total: -143.48 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.07 Total: -32.38 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.03 Total: 52.91 kcal Total: -92.76 3.12 -89.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982293726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.163 kcal (2) G-P(sol) polarization free energy of solvation -92.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds