Wall clock time and date at job start Wed Apr 1 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53758 * 112.06650 * 2 1 4 4 N 1.47207 * 106.40556 * 217.90538 * 3 2 1 5 5 C 1.36940 * 126.69996 * 211.29710 * 4 3 2 6 6 H 1.08003 * 119.99479 * 165.69096 * 5 4 3 7 7 C 1.38804 * 120.00008 * 345.68472 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70749 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70703 * 7 5 4 10 10 H 1.48499 * 109.47137 * 59.99982 * 9 7 5 11 11 H 1.48496 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46625 * 300.00079 * 9 7 5 13 13 C 1.47206 * 106.59396 * 31.55360 * 4 3 2 14 14 C 1.54037 * 106.26339 * 328.37584 * 13 4 3 15 15 C 1.52997 * 112.76881 * 141.67630 * 14 13 4 16 16 C 1.54316 * 109.25396 * 267.00728 * 14 13 4 17 17 N 1.48115 * 104.71017 * 88.38641 * 16 14 13 18 18 C 1.34775 * 127.84537 * 219.78296 * 17 16 14 19 19 O 1.21282 * 119.99845 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99712 * 359.97438 * 18 17 16 21 21 H 1.09002 * 115.55266 * 34.27940 * 20 18 17 22 22 C 1.53001 * 117.49712 * 248.60737 * 20 18 17 23 23 C 1.53000 * 59.99994 * 252.51499 * 22 20 18 24 24 H 1.08998 * 117.50526 * 107.49247 * 23 22 20 25 25 C 1.50705 * 117.49792 * 252.51088 * 23 22 20 26 26 C 1.34666 * 126.59088 * 33.31098 * 25 23 22 27 27 N 1.34136 * 108.02293 * 179.87455 * 26 25 23 28 28 C 1.30496 * 109.25117 * 0.39501 * 27 26 25 29 29 N 1.35043 * 108.70274 * 359.75622 * 28 27 26 30 30 H 0.96998 * 126.39975 * 179.97438 * 29 28 27 31 31 C 1.48116 * 104.30799 * 39.78305 * 17 16 14 32 32 H 1.09003 * 109.47431 * 58.98253 * 1 2 3 33 33 H 1.08993 * 109.47641 * 178.98946 * 1 2 3 34 34 H 1.09009 * 109.47268 * 298.98787 * 1 2 3 35 35 H 1.08994 * 110.06959 * 98.66909 * 3 2 1 36 36 H 1.08999 * 110.07147 * 337.13432 * 3 2 1 37 37 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 38 38 H 1.09001 * 110.06421 * 87.68860 * 13 4 3 39 39 H 1.08993 * 110.06556 * 209.21464 * 13 4 3 40 40 H 1.09008 * 109.46953 * 301.37891 * 15 14 13 41 41 H 1.09003 * 109.47583 * 61.37569 * 15 14 13 42 42 H 1.08998 * 109.47435 * 181.38184 * 15 14 13 43 43 H 1.09001 * 110.39042 * 329.57849 * 16 14 13 44 44 H 1.09001 * 110.48418 * 207.23919 * 16 14 13 45 45 H 1.09000 * 117.49940 * 0.02562 * 22 20 18 46 46 H 1.08998 * 117.49834 * 145.02392 * 22 20 18 47 47 H 1.08008 * 125.99052 * 0.02562 * 26 25 23 48 48 H 1.07998 * 125.65011 * 179.73838 * 28 27 26 49 49 H 1.09007 * 110.38301 * 201.41314 * 31 17 16 50 50 H 1.08999 * 110.49005 * 79.08186 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3917 -0.8676 5 6 4.4264 2.1541 -0.7371 6 1 5.3213 1.8906 -1.2812 7 6 4.4214 3.2656 0.0944 8 7 3.2903 3.6946 0.6130 9 14 6.0203 4.1527 0.4773 10 1 6.6243 4.6511 -0.7844 11 1 5.7465 5.2980 1.3819 12 1 6.9610 3.2135 1.1393 13 6 3.0306 0.3832 -1.9064 14 6 2.1377 -0.6869 -1.2504 15 6 1.0608 -1.2210 -2.1969 16 6 3.0264 -1.8158 -0.6873 17 7 3.3640 -1.3786 0.6871 18 6 4.5442 -1.4988 1.3266 19 8 4.6636 -1.0880 2.4614 20 6 5.7152 -2.1448 0.6319 21 1 5.7797 -1.9697 -0.4420 22 6 6.1859 -3.5030 1.1558 23 6 7.0277 -2.2512 1.4110 24 1 7.0443 -1.8540 2.4258 25 6 8.3113 -2.1058 0.6348 26 6 8.5423 -2.5317 -0.6216 27 7 9.8033 -2.2077 -0.9444 28 6 10.3651 -1.6047 0.0674 29 7 9.4684 -1.5206 1.0736 30 1 9.6166 -1.1207 1.9448 31 6 2.1099 -0.7794 1.1989 32 1 -0.3634 0.5296 -0.8807 33 1 -0.3634 -1.0274 -0.0181 34 1 -0.3634 0.4981 0.8990 35 1 2.3911 1.7136 1.0121 36 1 1.3739 2.1260 -0.3978 37 1 3.2869 4.4715 1.1937 38 1 2.5121 0.8415 -2.7486 39 1 3.9663 -0.0643 -2.2413 40 1 0.4330 -0.3965 -2.5351 41 1 1.5349 -1.6931 -3.0574 42 1 0.4471 -1.9536 -1.6728 43 1 3.9316 -1.9208 -1.2855 44 1 2.4773 -2.7571 -0.6622 45 1 5.6483 -3.9296 2.0027 46 1 6.5604 -4.2214 0.4266 47 1 7.8353 -3.0422 -1.2588 48 1 11.3792 -1.2345 0.0955 49 1 2.3228 -0.1014 2.0255 50 1 1.4167 -1.5583 1.5166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982299954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:49 Heat of formation + Delta-G solvation = 85.275224 kcal Electronic energy + Delta-G solvation = -32035.882290 eV Core-core repulsion = 28065.763462 eV Total energy + Delta-G solvation = -3970.118828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.09038 -40.41169 -38.81740 -36.27894 -34.64734 -32.93585 -32.50649 -31.76056 -30.69045 -29.31490 -27.04038 -26.12465 -25.74121 -24.94124 -23.60982 -23.21012 -22.02187 -21.62986 -20.41168 -19.98851 -18.81963 -18.15908 -17.71584 -16.98763 -16.36335 -15.56716 -15.42963 -14.95616 -14.66764 -14.56616 -14.27745 -13.90965 -13.72929 -13.51817 -13.49182 -13.39406 -13.17507 -12.79430 -12.68127 -12.17747 -12.00261 -11.95348 -11.70432 -11.51513 -11.38787 -11.37432 -11.06280 -10.80570 -10.79728 -10.63548 -10.58942 -10.07849 -10.05614 -10.03450 -9.99062 -9.78432 -9.69854 -9.54379 -9.44964 -8.62582 -8.26778 -8.19269 -6.75935 -5.74090 -3.06085 1.89669 2.84631 3.00554 3.13400 3.35858 3.40625 3.45174 3.46280 4.02205 4.45731 4.51366 4.68549 4.72167 4.79291 4.81146 4.98512 5.10852 5.13456 5.26027 5.33707 5.44989 5.47660 5.49907 5.56812 5.57516 5.64995 5.71151 5.73140 5.87975 5.90581 5.92417 5.98469 6.09198 6.12667 6.14654 6.28308 6.30205 6.33243 6.47336 6.49281 6.58642 6.67542 6.68197 6.85038 6.95219 7.31879 7.42100 7.59865 7.78265 8.01466 8.01739 8.29346 8.59973 9.20103 9.82702 10.54442 11.39974 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.004876 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.022174 B = 5741.556233 C = 7510.381805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 C 0.182 3.818 4 N -0.588 5.588 5 C -0.223 4.223 6 H 0.070 0.930 7 C -0.001 4.001 8 N -0.915 5.915 9 Si 0.906 3.094 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.146 3.854 14 C -0.087 4.087 15 C -0.123 4.123 16 C 0.119 3.881 17 N -0.599 5.599 18 C 0.573 3.427 19 O -0.546 6.546 20 C -0.158 4.158 21 H 0.127 0.873 22 C -0.135 4.135 23 C -0.058 4.058 24 H 0.124 0.876 25 C 0.018 3.982 26 C -0.024 4.024 27 N -0.493 5.493 28 C 0.181 3.819 29 N -0.563 5.563 30 H 0.420 0.580 31 C 0.125 3.875 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.021 0.979 37 H 0.253 0.747 38 H 0.018 0.982 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.167 0.833 48 H 0.208 0.792 49 H 0.081 0.919 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 -15.608 -0.550 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 C 0.056 3.944 4 N -0.311 5.311 5 C -0.351 4.351 6 H 0.088 0.912 7 C -0.198 4.198 8 N -0.561 5.561 9 Si 0.736 3.264 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.214 1.214 13 C 0.019 3.981 14 C -0.089 4.089 15 C -0.181 4.181 16 C -0.004 4.004 17 N -0.330 5.330 18 C 0.361 3.639 19 O -0.424 6.424 20 C -0.180 4.180 21 H 0.145 0.855 22 C -0.173 4.173 23 C -0.078 4.078 24 H 0.141 0.859 25 C -0.097 4.097 26 C -0.172 4.172 27 N -0.212 5.212 28 C -0.102 4.102 29 N -0.166 5.166 30 H 0.258 0.742 31 C 0.003 3.997 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.185 0.815 48 H 0.224 0.776 49 H 0.099 0.901 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.244 -15.351 -0.564 15.525 hybrid contribution 0.572 1.189 1.255 1.821 sum 2.816 -14.162 0.691 14.456 Atomic orbital electron populations 1.21585 0.93629 1.00711 1.01984 1.22565 0.94723 0.99694 0.93063 1.21186 0.87822 0.88041 0.97316 1.44276 1.16420 1.42968 1.27427 1.18826 0.88132 1.03823 1.24363 0.91170 1.24778 0.96761 0.97106 1.01151 1.69903 1.23724 1.26133 1.36348 0.86298 0.83183 0.79016 0.77897 1.21093 1.21569 1.21381 1.21380 0.95303 0.89647 0.91761 1.22373 0.95444 0.95419 0.95695 1.21620 0.97609 1.00691 0.98210 1.22426 0.98789 0.96271 0.82957 1.48436 1.10255 1.58863 1.15454 1.18858 0.81401 0.78344 0.85268 1.90673 1.82722 1.50160 1.18884 1.22295 0.93613 1.01361 1.00710 0.85470 1.23121 1.01152 0.89662 1.03345 1.20113 0.85688 1.02680 0.99271 0.85853 1.20307 0.88338 1.04437 0.96666 1.21977 0.94596 1.06598 0.94012 1.70265 1.07887 1.15836 1.27195 1.24925 0.97357 1.03774 0.84184 1.43180 1.11201 1.45826 1.16419 0.74177 1.22344 0.83950 0.96068 0.97365 0.92164 0.93120 0.92621 0.90751 0.96061 0.93701 0.96448 0.94328 0.91993 0.92865 0.92646 0.90727 0.91748 0.87691 0.87321 0.81547 0.77591 0.90056 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 7.54 37.15 0.28 -1.42 16 2 C -0.10 -1.70 1.08 -152.33 -0.16 -1.87 16 3 C 0.18 4.27 4.68 -3.26 -0.02 4.26 16 4 N -0.59 -14.64 3.38 -171.00 -0.58 -15.22 16 5 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 6 H 0.07 1.96 7.85 -52.48 -0.41 1.55 16 7 C 0.00 -0.02 5.38 -17.43 -0.09 -0.12 16 8 N -0.91 -27.30 10.87 55.49 0.60 -26.70 16 9 Si 0.91 23.05 29.56 -169.99 -5.03 18.02 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C 0.15 2.90 6.34 -3.12 -0.02 2.88 16 14 C -0.09 -1.36 1.08 -152.18 -0.16 -1.52 16 15 C -0.12 -1.48 7.59 37.16 0.28 -1.20 16 16 C 0.12 1.69 5.94 -2.46 -0.01 1.67 16 17 N -0.60 -10.40 3.31 -169.45 -0.56 -10.96 16 18 C 0.57 10.67 7.70 -10.99 -0.08 10.58 16 19 O -0.55 -12.20 16.52 5.56 0.09 -12.11 16 20 C -0.16 -2.31 5.11 -91.77 -0.47 -2.78 16 21 H 0.13 1.81 6.90 -51.93 -0.36 1.45 16 22 C -0.13 -1.48 9.75 -26.73 -0.26 -1.75 16 23 C -0.06 -0.78 5.84 -91.77 -0.54 -1.32 16 24 H 0.12 1.80 7.67 -51.93 -0.40 1.40 16 25 C 0.02 0.25 6.92 -81.60 -0.56 -0.32 16 26 C -0.02 -0.33 10.94 -17.81 -0.19 -0.53 16 27 N -0.49 -7.21 11.25 -14.66 -0.16 -7.37 16 28 C 0.18 2.10 13.04 -90.38 -1.18 0.93 16 29 N -0.56 -6.49 6.15 -10.30 -0.06 -6.55 16 30 H 0.42 3.68 8.96 -40.82 -0.37 3.31 16 31 C 0.13 2.20 6.05 -2.46 -0.01 2.18 16 32 H 0.06 0.84 7.20 -51.93 -0.37 0.47 16 33 H 0.05 0.59 7.21 -51.93 -0.37 0.21 16 34 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.07 2.04 6.03 -51.93 -0.31 1.72 16 36 H 0.02 0.55 7.89 -51.93 -0.41 0.14 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.02 0.36 7.93 -51.93 -0.41 -0.05 16 39 H 0.04 0.75 7.40 -51.93 -0.38 0.37 16 40 H 0.06 0.77 7.18 -51.92 -0.37 0.40 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.57 7.21 -51.93 -0.37 0.20 16 43 H 0.07 1.01 6.07 -51.93 -0.32 0.70 16 44 H 0.06 0.75 7.96 -51.93 -0.41 0.33 16 45 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.11 0.96 7.94 -51.93 -0.41 0.55 16 47 H 0.17 1.99 8.06 -52.48 -0.42 1.56 16 48 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 49 H 0.08 1.69 7.16 -51.93 -0.37 1.32 16 50 H 0.06 0.85 7.97 -51.93 -0.41 0.44 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -36.07 393.05 -10.87 -46.94 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.72 Total: 4.75 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -3.37 Total: 3.27 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.77 Total: -66.80 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.07 -10.87 -46.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982299954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.217 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds