Wall clock time and date at job start Wed Apr 1 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06485 * 2 1 4 4 N 1.47200 * 106.40470 * 217.90227 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29542 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47206 * 106.59316 * 31.56290 * 4 3 2 14 14 C 1.54032 * 106.26666 * 328.37046 * 13 4 3 15 15 C 1.52994 * 112.77347 * 141.67274 * 14 13 4 16 16 C 1.54319 * 109.25342 * 267.01388 * 14 13 4 17 17 N 1.48114 * 104.71151 * 88.38048 * 16 14 13 18 18 C 1.34775 * 127.84317 * 219.77963 * 17 16 14 19 19 O 1.21568 * 120.00003 * 180.02562 * 18 17 16 20 20 C 1.47711 * 120.00037 * 0.02562 * 18 17 16 21 21 C 1.41500 * 126.51877 * 180.02562 * 20 18 17 22 22 C 1.35363 * 105.50243 * 180.02562 * 21 20 18 23 23 C 1.50703 * 126.38237 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49866 * 213.61786 * 23 22 21 25 25 C 1.53005 * 60.00068 * 252.51091 * 24 23 22 26 26 N 1.35027 * 107.22902 * 359.97438 * 22 21 20 27 27 H 0.97000 * 124.88481 * 179.97438 * 26 22 21 28 28 N 1.28468 * 110.23206 * 359.72520 * 26 22 21 29 29 C 1.48116 * 104.31019 * 39.78297 * 17 16 14 30 30 H 1.09008 * 109.47132 * 58.97907 * 1 2 3 31 31 H 1.09000 * 109.47484 * 178.98534 * 1 2 3 32 32 H 1.09001 * 109.46577 * 298.98459 * 1 2 3 33 33 H 1.09008 * 110.06527 * 98.67353 * 3 2 1 34 34 H 1.09000 * 110.07683 * 337.14461 * 3 2 1 35 35 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 36 36 H 1.09005 * 110.06738 * 87.68752 * 13 4 3 37 37 H 1.09000 * 110.06826 * 209.20691 * 13 4 3 38 38 H 1.08997 * 109.47368 * 301.38776 * 15 14 13 39 39 H 1.09006 * 109.46616 * 61.38295 * 15 14 13 40 40 H 1.08997 * 109.47115 * 181.37965 * 15 14 13 41 41 H 1.09001 * 110.38896 * 329.57147 * 16 14 13 42 42 H 1.09007 * 110.48496 * 207.23535 * 16 14 13 43 43 H 1.08003 * 127.24686 * 359.97438 * 21 20 18 44 44 H 1.09001 * 115.55387 * 359.32373 * 23 22 21 45 45 H 1.08999 * 117.49409 * 359.97438 * 24 23 22 46 46 H 1.08997 * 117.50039 * 145.02113 * 24 23 22 47 47 H 1.08996 * 117.49506 * 252.50846 * 25 24 23 48 48 H 1.09000 * 117.51890 * 107.47731 * 25 24 23 49 49 H 1.08999 * 110.38050 * 201.41249 * 29 17 16 50 50 H 1.08993 * 110.38752 * 79.03362 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4264 2.1542 -0.7370 6 1 5.3214 1.8907 -1.2812 7 6 4.4215 3.2655 0.0945 8 7 3.2904 3.6945 0.6132 9 14 6.0204 4.1525 0.4776 10 1 6.2496 5.2176 -0.5315 11 1 5.9372 4.7611 1.8296 12 1 7.1453 3.1838 0.4391 13 6 3.0306 0.3833 -1.9064 14 6 2.1377 -0.6869 -1.2506 15 6 1.0607 -1.2208 -2.1971 16 6 3.0265 -1.8158 -0.6875 17 7 3.3640 -1.3787 0.6868 18 6 4.5443 -1.4990 1.3263 19 8 4.6640 -1.0872 2.4639 20 6 5.6923 -2.1311 0.6450 21 6 6.9863 -2.3282 1.1827 22 6 7.6956 -2.9381 0.2044 23 6 9.1389 -3.3651 0.2801 24 6 9.9658 -3.2913 -1.0051 25 6 9.5346 -4.6503 -0.4498 26 7 6.8685 -3.0937 -0.8516 27 1 7.1165 -3.5042 -1.6947 28 7 5.7046 -2.6244 -0.5772 29 6 2.1099 -0.7795 1.1988 30 1 -0.3634 0.5296 -0.8807 31 1 -0.3634 -1.0275 -0.0182 32 1 -0.3632 0.4980 0.8990 33 1 2.3912 1.7136 1.0122 34 1 1.3739 2.1261 -0.3976 35 1 3.2870 4.4714 1.1940 36 1 2.5121 0.8417 -2.7486 37 1 3.9663 -0.0642 -2.2415 38 1 0.4330 -0.3963 -2.5352 39 1 1.5350 -1.6929 -3.0576 40 1 0.4472 -1.9535 -1.6730 41 1 3.9316 -1.9207 -1.2857 42 1 2.4773 -2.7571 -0.6625 43 1 7.3348 -2.0497 2.1663 44 1 9.6463 -3.1428 1.2189 45 1 9.4658 -2.9343 -1.9054 46 1 11.0175 -3.0203 -0.9120 47 1 10.3027 -5.2732 0.0085 48 1 8.7510 -5.1871 -0.9844 49 1 2.3230 -0.1016 2.0254 50 1 1.4178 -1.5597 1.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982591560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:17 Heat of formation + Delta-G solvation = 82.485305 kcal Electronic energy + Delta-G solvation = -32103.230722 eV Core-core repulsion = 28132.990914 eV Total energy + Delta-G solvation = -3970.239808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.78913 -41.69704 -39.58280 -38.08214 -36.43108 -34.62033 -33.33130 -32.75971 -32.50711 -31.57509 -28.31970 -27.84045 -26.89036 -26.52969 -24.97425 -24.18923 -23.43377 -23.28168 -22.10456 -21.53859 -20.12199 -19.26492 -18.77982 -18.69079 -17.58582 -17.14143 -16.89503 -16.49701 -16.44928 -16.35193 -15.62260 -15.19070 -15.15429 -14.86329 -14.82515 -14.42876 -14.40286 -14.23206 -13.70537 -13.64505 -13.33879 -13.18357 -12.98243 -12.86111 -12.79633 -12.54576 -12.48011 -12.47035 -12.21728 -12.05847 -11.95514 -11.86505 -11.75672 -11.46460 -11.42279 -11.16218 -11.13967 -11.03039 -10.71457 -10.47125 -9.77713 -9.62815 -8.80294 -7.92628 -5.24255 0.48624 0.97956 1.32999 1.38054 1.44815 1.72743 2.10242 2.38847 2.43299 2.98900 3.22591 3.27133 3.42929 3.52388 3.66393 3.73665 3.75872 3.92114 4.03742 4.06741 4.16645 4.24581 4.37407 4.43437 4.54649 4.63958 4.69168 4.74097 4.76203 4.78226 4.84729 4.87934 4.92150 4.98753 4.98958 5.10135 5.12403 5.14628 5.18631 5.22454 5.25564 5.34366 5.39136 5.42921 5.46728 5.53335 5.65465 5.81753 6.05488 6.20983 6.57133 6.77669 7.05899 7.14657 7.75270 8.46584 9.20147 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.004649 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.609664 B = 6021.367140 C = 7681.008437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C 0.192 3.808 4 N -0.609 5.609 5 C -0.228 4.228 6 H 0.063 0.937 7 C -0.058 4.058 8 N -0.942 5.942 9 Si 0.962 3.038 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.143 3.857 14 C -0.074 4.074 15 C -0.116 4.116 16 C 0.114 3.886 17 N -0.597 5.597 18 C 0.611 3.389 19 O -0.588 6.588 20 C -0.022 4.022 21 C -0.205 4.205 22 C 0.071 3.929 23 C -0.109 4.109 24 C -0.168 4.168 25 C -0.153 4.153 26 N -0.365 5.365 27 H 0.458 0.542 28 N -0.253 5.253 29 C 0.123 3.877 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.024 0.976 34 H -0.006 1.006 35 H 0.246 0.754 36 H 0.018 0.982 37 H 0.033 0.967 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.155 0.845 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.102 0.898 49 H 0.040 0.960 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -21.840 -7.108 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C 0.066 3.934 4 N -0.333 5.333 5 C -0.357 4.357 6 H 0.081 0.919 7 C -0.252 4.252 8 N -0.590 5.590 9 Si 0.791 3.209 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.018 3.982 14 C -0.076 4.076 15 C -0.173 4.173 16 C -0.008 4.008 17 N -0.326 5.326 18 C 0.400 3.600 19 O -0.468 6.468 20 C -0.181 4.181 21 C -0.233 4.233 22 C -0.055 4.055 23 C -0.129 4.129 24 C -0.205 4.205 25 C -0.190 4.190 26 N -0.081 5.081 27 H 0.306 0.694 28 N -0.090 5.090 29 C 0.001 3.999 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.012 0.988 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.172 0.828 44 H 0.157 0.843 45 H 0.114 0.886 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.120 0.880 49 H 0.058 0.942 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.301 -21.581 -7.259 23.172 hybrid contribution 1.489 1.598 1.033 2.416 sum 5.790 -19.983 -6.226 21.717 Atomic orbital electron populations 1.21580 0.90194 1.03309 1.02070 1.22482 0.97147 0.95422 0.93979 1.20965 0.86898 0.91525 0.94036 1.44512 1.15982 1.43453 1.29349 1.19080 0.89162 1.03819 1.23669 0.91907 1.25512 0.99625 0.98392 1.01674 1.70104 1.25350 1.26378 1.37168 0.85329 0.79899 0.78572 0.77137 1.20236 1.22047 1.20535 1.21580 0.96174 0.89558 0.90921 1.22362 0.95734 0.94296 0.95194 1.21615 0.96396 1.01285 0.98033 1.22857 1.00133 0.96546 0.81223 1.48518 1.09607 1.57593 1.16917 1.16838 0.80853 0.77922 0.84397 1.90714 1.83491 1.52456 1.20140 1.21625 0.96081 1.07212 0.93177 1.21547 0.92317 1.07172 1.02226 1.20694 0.94494 1.02565 0.87791 1.20649 0.86881 1.05150 1.00237 1.23213 1.01363 1.00634 0.95331 1.23215 1.03815 0.90016 1.01979 1.43292 1.06028 1.43610 1.15182 0.69394 1.73477 1.05477 1.14401 1.15637 1.22438 0.84533 0.96603 0.96324 0.91766 0.89078 0.92993 0.95711 0.98822 0.94490 0.96462 0.94834 0.92076 0.91039 0.89633 0.88616 0.88527 0.82754 0.84342 0.88632 0.86279 0.85866 0.88004 0.94176 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 7.54 71.98 0.54 -2.57 16 2 C -0.09 -3.23 1.08 -50.77 -0.05 -3.28 16 3 C 0.19 9.84 4.68 86.50 0.41 10.25 16 4 N -0.61 -32.96 3.38 -694.93 -2.35 -35.31 16 5 C -0.23 -13.80 10.28 84.03 0.86 -12.94 16 6 H 0.06 3.77 7.85 -2.91 -0.02 3.75 16 7 C -0.06 -3.59 5.38 84.86 0.46 -3.13 16 8 N -0.94 -60.57 10.87 21.65 0.24 -60.34 16 9 Si 0.96 50.21 29.56 68.60 2.03 52.24 16 10 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.29 -15.45 7.11 99.48 0.71 -14.75 16 12 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 13 C 0.14 6.07 6.34 86.59 0.55 6.61 16 14 C -0.07 -2.38 1.08 -50.67 -0.05 -2.43 16 15 C -0.12 -2.52 7.59 71.98 0.55 -1.98 16 16 C 0.11 3.59 5.71 86.52 0.49 4.08 16 17 N -0.60 -23.75 3.31 -811.96 -2.69 -26.44 16 18 C 0.61 27.63 7.92 86.75 0.69 28.31 16 19 O -0.59 -31.10 17.19 -3.93 -0.07 -31.17 16 20 C -0.02 -0.82 7.01 42.46 0.30 -0.52 16 21 C -0.20 -6.74 10.73 22.41 0.24 -6.50 16 22 C 0.07 1.68 6.64 41.40 0.28 1.95 16 23 C -0.11 -1.66 6.26 -11.54 -0.07 -1.73 16 24 C -0.17 -1.80 10.22 30.60 0.31 -1.48 16 25 C -0.15 -1.36 10.23 30.60 0.31 -1.05 16 26 N -0.36 -8.13 6.80 -47.93 -0.33 -8.45 16 27 H 0.46 6.22 8.96 -219.99 -1.97 4.25 16 28 N -0.25 -7.79 9.30 -48.18 -0.45 -8.24 16 29 C 0.12 4.73 6.05 86.51 0.52 5.25 16 30 H 0.06 1.72 7.20 -2.38 -0.02 1.71 16 31 H 0.09 1.80 7.21 -2.39 -0.02 1.78 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.02 1.50 6.03 -2.38 -0.01 1.48 16 34 H -0.01 -0.34 7.89 -2.39 -0.02 -0.36 16 35 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.02 0.74 7.93 -2.38 -0.02 0.72 16 37 H 0.03 1.43 7.40 -2.39 -0.02 1.41 16 38 H 0.06 1.38 7.18 -2.39 -0.02 1.36 16 39 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.41 7.21 -2.39 -0.02 1.40 16 41 H 0.10 3.13 4.83 -2.39 -0.01 3.11 16 42 H 0.10 2.35 7.96 -2.38 -0.02 2.33 16 43 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 49 H 0.04 1.87 7.16 -2.39 -0.02 1.85 16 50 H 0.10 2.99 7.97 -2.39 -0.02 2.97 16 Total: -1.00 -86.34 392.64 1.70 -84.64 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -1.01 Total: 14.21 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.33 Total: 18.85 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -5.58 Total: -138.78 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.07 Total: -31.17 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.03 Total: 52.24 kcal Total: -86.34 1.70 -84.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982591560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.129 kcal (2) G-P(sol) polarization free energy of solvation -86.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds