Wall clock time and date at job start Wed Apr 1 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54314 * 112.07865 * 2 1 4 4 N 1.48108 * 104.71567 * 262.03904 * 3 2 1 5 5 C 1.36933 * 127.84943 * 140.24006 * 4 3 2 6 6 H 1.07998 * 119.99374 * 335.57255 * 5 4 3 7 7 C 1.38804 * 120.00321 * 155.57242 * 5 4 3 8 8 N 1.31618 * 119.99854 * 354.76585 * 7 5 4 9 9 Si 1.86795 * 120.00080 * 174.76469 * 7 5 4 10 10 H 1.48500 * 109.47314 * 89.99959 * 9 7 5 11 11 H 1.48500 * 109.47396 * 210.00112 * 9 7 5 12 12 H 1.48501 * 109.47026 * 330.00060 * 9 7 5 13 13 C 1.49981 * 104.93361 * 320.71041 * 4 3 2 14 14 C 1.54323 * 103.81682 * 38.70056 * 13 4 3 15 15 C 1.52996 * 112.07492 * 99.65664 * 14 13 4 16 16 C 1.53755 * 109.07755 * 224.35804 * 14 13 4 17 17 N 1.47207 * 106.40568 * 94.28927 * 16 14 13 18 18 C 1.34773 * 126.70326 * 211.29241 * 17 16 14 19 19 O 1.21604 * 119.99990 * 5.63098 * 18 17 16 20 20 C 1.47431 * 120.00035 * 185.63257 * 18 17 16 21 21 C 1.38045 * 126.41180 * 24.58363 * 20 18 17 22 22 N 1.34265 * 107.41259 * 179.97438 * 21 20 18 23 23 H 0.96996 * 125.74721 * 179.73973 * 22 21 20 24 24 N 1.39931 * 108.49193 * 359.97438 * 22 21 20 25 25 C 1.30445 * 108.89756 * 0.02562 * 24 22 21 26 26 C 1.50704 * 125.98419 * 180.02562 * 25 24 22 27 27 C 1.52997 * 117.50126 * 8.71991 * 26 25 24 28 28 C 1.53000 * 117.50025 * 300.05771 * 26 25 24 29 29 C 1.47203 * 106.59101 * 31.55898 * 17 16 14 30 30 H 1.09001 * 109.47126 * 177.58827 * 1 2 3 31 31 H 1.08999 * 109.47151 * 297.59048 * 1 2 3 32 32 H 1.09001 * 109.47069 * 57.58762 * 1 2 3 33 33 H 1.09000 * 110.38485 * 20.84899 * 3 2 1 34 34 H 1.09003 * 110.38934 * 143.22906 * 3 2 1 35 35 H 0.97005 * 120.00001 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.29136 * 280.44314 * 13 4 3 37 37 H 1.09001 * 111.35128 * 157.46798 * 13 4 3 38 38 H 1.09003 * 109.47221 * 182.01051 * 15 14 13 39 39 H 1.09000 * 109.47830 * 302.01144 * 15 14 13 40 40 H 1.09000 * 109.46980 * 62.01844 * 15 14 13 41 41 H 1.08994 * 110.07016 * 335.05467 * 16 14 13 42 42 H 1.09005 * 110.11336 * 213.55118 * 16 14 13 43 43 H 1.07999 * 126.29640 * 359.95804 * 21 20 18 44 44 H 1.08998 * 115.54544 * 154.39537 * 26 25 24 45 45 H 1.08997 * 117.50136 * 0.02562 * 27 26 25 46 46 H 1.09004 * 117.49816 * 145.02697 * 27 26 25 47 47 H 1.08998 * 117.50370 * 214.98602 * 28 26 25 48 48 H 1.09002 * 117.49587 * 359.97438 * 28 26 25 49 49 H 1.08996 * 110.07183 * 87.68332 * 29 17 16 50 50 H 1.09000 * 110.06517 * 209.20551 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1100 1.4300 0.0000 4 7 2.4353 1.7040 -1.4187 5 6 2.2602 2.8729 -2.1102 6 1 1.5150 3.5848 -1.7873 7 6 3.0405 3.1428 -3.2259 8 7 4.0171 2.3258 -3.5593 9 14 2.7046 4.6656 -4.2544 10 1 3.5019 5.8032 -3.7296 11 1 3.0854 4.4037 -5.6657 12 1 1.2595 5.0005 -4.1856 13 6 2.9911 0.4139 -1.9440 14 6 2.1156 -0.6651 -1.2726 15 6 1.0222 -1.1830 -2.2091 16 6 3.0197 -1.7974 -0.7582 17 7 3.3081 -1.4908 0.6524 18 6 4.4323 -1.7971 1.3298 19 8 5.3766 -2.2949 0.7473 20 6 4.5172 -1.5289 2.7770 21 6 3.4570 -1.4300 3.6556 22 7 3.9658 -1.1798 4.8727 23 1 3.4532 -1.0576 5.6870 24 7 5.3599 -1.1197 4.7671 25 6 5.6988 -1.3258 3.5245 26 6 7.1045 -1.3450 2.9815 27 6 8.2527 -1.3066 3.9919 28 6 7.9406 -0.0735 3.1403 29 6 2.1262 -0.7900 1.1804 30 1 -0.3633 -1.0268 -0.0432 31 1 -0.3633 0.4760 0.9108 32 1 -0.3633 0.5508 -0.8676 33 1 1.3679 2.1407 0.3636 34 1 3.0112 1.4743 0.6116 35 1 4.5622 2.5142 -4.3393 36 1 4.0323 0.3001 -1.6420 37 1 2.9008 0.3553 -3.0287 38 1 0.4091 -1.9143 -1.6824 39 1 0.3972 -0.3510 -2.5333 40 1 1.4814 -1.6530 -3.0788 41 1 3.9462 -1.8261 -1.3316 42 1 2.5029 -2.7540 -0.8349 43 1 2.4107 -1.5344 3.4093 44 1 7.2505 -1.9335 2.0758 45 1 7.9915 -1.2679 5.0494 46 1 9.1544 -1.8695 3.7507 47 1 8.6369 0.1743 2.3392 48 1 7.4737 0.7770 3.6371 49 1 1.4003 -1.5113 1.5557 50 1 2.4213 -0.1068 1.9768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982694412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:27 Heat of formation + Delta-G solvation = 99.761065 kcal Electronic energy + Delta-G solvation = -31781.792634 eV Core-core repulsion = 27812.301959 eV Total energy + Delta-G solvation = -3969.490675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58694 -40.20670 -38.03379 -37.04115 -34.77253 -32.87500 -31.89421 -31.50188 -30.61675 -30.30511 -27.01094 -25.83931 -25.80147 -24.80660 -24.07117 -22.96575 -22.32840 -21.63513 -20.20024 -19.78785 -19.27186 -18.15730 -17.37982 -16.72173 -16.22600 -15.61166 -15.51029 -15.14122 -14.77681 -14.76649 -14.59514 -14.20645 -13.85452 -13.46086 -13.40150 -13.16183 -12.96220 -12.78303 -12.05451 -11.99099 -11.92582 -11.69341 -11.54570 -11.52575 -11.38332 -11.30106 -11.23060 -10.99451 -10.82798 -10.76892 -10.68375 -10.37099 -10.05226 -9.95848 -9.87842 -9.79463 -9.57367 -9.51595 -9.35833 -8.84159 -8.59326 -8.31255 -6.70711 -5.78528 -3.16758 1.45147 2.06413 2.53114 3.22635 3.38126 3.43779 3.45409 3.53238 3.98370 4.28368 4.46666 4.50070 4.76584 4.78642 4.87373 5.01073 5.08333 5.13393 5.27218 5.35033 5.41310 5.53802 5.55472 5.58554 5.63702 5.64889 5.66539 5.78950 5.86011 5.86730 5.93775 6.12906 6.13778 6.15510 6.17382 6.23223 6.31053 6.32300 6.46145 6.48343 6.56473 6.65776 6.74693 6.85001 6.94678 6.96900 7.37114 7.42826 7.57938 7.73965 7.86466 8.23312 8.49672 9.10690 9.75470 10.57390 11.36579 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.003613 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.422719 B = 7747.564674 C = 8753.969903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C 0.142 3.858 4 N -0.592 5.592 5 C -0.232 4.232 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.908 5.908 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.179 3.821 14 C -0.093 4.093 15 C -0.119 4.119 16 C 0.120 3.880 17 N -0.607 5.607 18 C 0.611 3.389 19 O -0.541 6.541 20 C -0.269 4.269 21 C 0.099 3.901 22 N -0.464 5.464 23 H 0.443 0.557 24 N -0.299 5.299 25 C 0.167 3.833 26 C -0.087 4.087 27 C -0.167 4.167 28 C -0.159 4.159 29 C 0.110 3.890 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.019 0.981 35 H 0.254 0.746 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.187 0.813 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -9.924 15.090 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C 0.015 3.985 4 N -0.316 5.316 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.195 4.195 8 N -0.552 5.552 9 Si 0.736 3.264 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.054 3.946 14 C -0.095 4.095 15 C -0.177 4.177 16 C -0.002 4.002 17 N -0.339 5.339 18 C 0.401 3.599 19 O -0.419 6.419 20 C -0.283 4.283 21 C -0.053 4.053 22 N -0.168 5.168 23 H 0.287 0.713 24 N -0.121 5.121 25 C -0.001 4.001 26 C -0.107 4.107 27 C -0.204 4.204 28 C -0.198 4.198 29 C -0.014 4.014 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.204 0.796 44 H 0.158 0.842 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.079 0.921 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.810 -9.835 15.791 18.814 hybrid contribution -0.886 0.789 -0.885 1.481 sum -3.697 -9.047 14.905 17.823 Atomic orbital electron populations 1.21618 0.93281 1.00980 1.01905 1.22361 0.95394 0.97568 0.93227 1.21679 0.96233 0.91699 0.88849 1.45207 1.74240 1.08322 1.03837 1.18880 1.13862 0.95136 1.08195 0.91257 1.25054 0.96017 0.98108 1.00367 1.69910 1.20296 1.37511 1.27527 0.86228 0.77725 0.82827 0.79572 1.21451 1.21610 1.20553 1.21832 0.92767 0.81861 0.98135 1.22514 0.96102 0.95617 0.95270 1.21616 0.97516 1.00400 0.98144 1.22092 0.99977 0.97020 0.81152 1.48177 1.15888 1.57421 1.12420 1.16770 0.80817 0.77659 0.84676 1.90733 1.36034 1.45440 1.69689 1.20160 0.92404 1.20890 0.94883 1.23338 0.99710 0.96885 0.85338 1.46024 1.05748 1.55870 1.09202 0.71264 1.77059 0.89491 1.26527 1.19062 1.21397 0.94578 0.94807 0.89285 1.20569 0.84636 1.03928 1.01579 1.22995 0.98548 1.01587 0.97303 1.23003 1.02241 0.91697 1.02817 1.22318 0.86821 0.94865 0.97387 0.93026 0.93312 0.91332 0.93655 0.96295 0.93558 0.95329 0.90888 0.93547 0.91588 0.92974 0.89954 0.92343 0.79574 0.84187 0.88232 0.88310 0.87890 0.88708 0.92122 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 7.53 37.16 0.28 -1.28 16 2 C -0.08 -1.29 1.08 -152.18 -0.16 -1.46 16 3 C 0.14 2.84 6.32 -2.47 -0.02 2.82 16 4 N -0.59 -14.61 3.38 -167.44 -0.57 -15.18 16 5 C -0.23 -6.32 10.31 -15.06 -0.16 -6.48 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C 0.00 0.08 5.42 -17.43 -0.09 -0.01 16 8 N -0.91 -26.61 11.25 55.49 0.62 -25.98 16 9 Si 0.91 21.74 29.56 -169.99 -5.02 16.71 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.18 4.18 4.89 -1.41 -0.01 4.17 16 14 C -0.09 -1.61 1.06 -152.33 -0.16 -1.77 16 15 C -0.12 -1.82 7.45 37.16 0.28 -1.54 16 16 C 0.12 1.99 5.97 -3.26 -0.02 1.97 16 17 N -0.61 -9.63 3.32 -172.71 -0.57 -10.20 16 18 C 0.61 10.54 7.77 -12.52 -0.10 10.44 16 19 O -0.54 -10.97 15.51 5.27 0.08 -10.89 16 20 C -0.27 -3.92 5.79 -105.07 -0.61 -4.52 16 21 C 0.10 1.03 10.12 -16.56 -0.17 0.86 16 22 N -0.46 -4.45 7.29 30.85 0.22 -4.23 16 23 H 0.44 2.45 8.96 -182.73 -1.64 0.81 16 24 N -0.30 -3.93 12.22 33.89 0.41 -3.52 16 25 C 0.17 2.45 6.79 -82.02 -0.56 1.90 16 26 C -0.09 -1.23 5.87 -91.77 -0.54 -1.77 16 27 C -0.17 -1.89 10.14 -26.69 -0.27 -2.16 16 28 C -0.16 -2.00 10.24 -26.69 -0.27 -2.27 16 29 C 0.11 1.43 4.29 -3.11 -0.01 1.42 16 30 H 0.05 0.57 7.09 -51.93 -0.37 0.20 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.02 7.17 -51.93 -0.37 0.65 16 33 H 0.05 0.87 7.90 -51.93 -0.41 0.46 16 34 H 0.02 0.41 7.55 -51.93 -0.39 0.02 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.03 0.76 7.51 -51.93 -0.39 0.37 16 37 H 0.07 1.89 6.89 -51.93 -0.36 1.53 16 38 H 0.05 0.58 7.10 -51.93 -0.37 0.21 16 39 H 0.07 1.10 7.16 -51.93 -0.37 0.73 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.55 7.29 -51.93 -0.38 1.17 16 42 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 43 H 0.19 1.30 6.15 -52.49 -0.32 0.97 16 44 H 0.14 2.18 6.72 -51.93 -0.35 1.84 16 45 H 0.10 1.12 7.90 -51.93 -0.41 0.71 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.06 0.61 7.54 -51.93 -0.39 0.22 16 50 H 0.07 0.93 5.87 -51.93 -0.30 0.62 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -34.06 388.41 -10.45 -44.51 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.89 Total: 2.60 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.59 Total: 0.32 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.12 Total: -59.11 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.06 -10.45 -44.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982694412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.270 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds