Wall clock time and date at job start Wed Apr 1 2020 03:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54314 * 112.07865 * 2 1 4 4 N 1.48108 * 104.71567 * 262.03904 * 3 2 1 5 5 C 1.36933 * 127.84943 * 140.24006 * 4 3 2 6 6 H 1.07998 * 119.99374 * 335.57255 * 5 4 3 7 7 C 1.38804 * 120.00321 * 155.57242 * 5 4 3 8 8 N 1.31618 * 119.99854 * 354.76585 * 7 5 4 9 9 Si 1.86795 * 120.00080 * 174.76469 * 7 5 4 10 10 H 1.48500 * 109.47314 * 89.99959 * 9 7 5 11 11 H 1.48500 * 109.47396 * 210.00112 * 9 7 5 12 12 H 1.48501 * 109.47026 * 330.00060 * 9 7 5 13 13 C 1.49981 * 104.93361 * 320.71041 * 4 3 2 14 14 C 1.54323 * 103.81682 * 38.70056 * 13 4 3 15 15 C 1.52996 * 112.07492 * 99.65664 * 14 13 4 16 16 C 1.53755 * 109.07755 * 224.35804 * 14 13 4 17 17 N 1.47207 * 106.40568 * 94.28927 * 16 14 13 18 18 C 1.34773 * 126.70326 * 211.29241 * 17 16 14 19 19 O 1.21604 * 119.99990 * 5.63098 * 18 17 16 20 20 C 1.47431 * 120.00035 * 185.63257 * 18 17 16 21 21 C 1.38045 * 126.41180 * 24.58363 * 20 18 17 22 22 N 1.34265 * 107.41259 * 179.97438 * 21 20 18 23 23 H 0.96996 * 125.74721 * 179.73973 * 22 21 20 24 24 N 1.39931 * 108.49193 * 359.97438 * 22 21 20 25 25 C 1.30445 * 108.89756 * 0.02562 * 24 22 21 26 26 C 1.50704 * 125.98419 * 180.02562 * 25 24 22 27 27 C 1.52997 * 117.50126 * 8.71991 * 26 25 24 28 28 C 1.53000 * 117.50025 * 300.05771 * 26 25 24 29 29 C 1.47203 * 106.59101 * 31.55898 * 17 16 14 30 30 H 1.09001 * 109.47126 * 177.58827 * 1 2 3 31 31 H 1.08999 * 109.47151 * 297.59048 * 1 2 3 32 32 H 1.09001 * 109.47069 * 57.58762 * 1 2 3 33 33 H 1.09000 * 110.38485 * 20.84899 * 3 2 1 34 34 H 1.09003 * 110.38934 * 143.22906 * 3 2 1 35 35 H 0.97005 * 120.00001 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.29136 * 280.44314 * 13 4 3 37 37 H 1.09001 * 111.35128 * 157.46798 * 13 4 3 38 38 H 1.09003 * 109.47221 * 182.01051 * 15 14 13 39 39 H 1.09000 * 109.47830 * 302.01144 * 15 14 13 40 40 H 1.09000 * 109.46980 * 62.01844 * 15 14 13 41 41 H 1.08994 * 110.07016 * 335.05467 * 16 14 13 42 42 H 1.09005 * 110.11336 * 213.55118 * 16 14 13 43 43 H 1.07999 * 126.29640 * 359.95804 * 21 20 18 44 44 H 1.08998 * 115.54544 * 154.39537 * 26 25 24 45 45 H 1.08997 * 117.50136 * 0.02562 * 27 26 25 46 46 H 1.09004 * 117.49816 * 145.02697 * 27 26 25 47 47 H 1.08998 * 117.50370 * 214.98602 * 28 26 25 48 48 H 1.09002 * 117.49587 * 359.97438 * 28 26 25 49 49 H 1.08996 * 110.07183 * 87.68332 * 29 17 16 50 50 H 1.09000 * 110.06517 * 209.20551 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1100 1.4300 0.0000 4 7 2.4353 1.7040 -1.4187 5 6 2.2602 2.8729 -2.1102 6 1 1.5150 3.5848 -1.7873 7 6 3.0405 3.1428 -3.2259 8 7 4.0171 2.3258 -3.5593 9 14 2.7046 4.6656 -4.2544 10 1 3.5019 5.8032 -3.7296 11 1 3.0854 4.4037 -5.6657 12 1 1.2595 5.0005 -4.1856 13 6 2.9911 0.4139 -1.9440 14 6 2.1156 -0.6651 -1.2726 15 6 1.0222 -1.1830 -2.2091 16 6 3.0197 -1.7974 -0.7582 17 7 3.3081 -1.4908 0.6524 18 6 4.4323 -1.7971 1.3298 19 8 5.3766 -2.2949 0.7473 20 6 4.5172 -1.5289 2.7770 21 6 3.4570 -1.4300 3.6556 22 7 3.9658 -1.1798 4.8727 23 1 3.4532 -1.0576 5.6870 24 7 5.3599 -1.1197 4.7671 25 6 5.6988 -1.3258 3.5245 26 6 7.1045 -1.3450 2.9815 27 6 8.2527 -1.3066 3.9919 28 6 7.9406 -0.0735 3.1403 29 6 2.1262 -0.7900 1.1804 30 1 -0.3633 -1.0268 -0.0432 31 1 -0.3633 0.4760 0.9108 32 1 -0.3633 0.5508 -0.8676 33 1 1.3679 2.1407 0.3636 34 1 3.0112 1.4743 0.6116 35 1 4.5622 2.5142 -4.3393 36 1 4.0323 0.3001 -1.6420 37 1 2.9008 0.3553 -3.0287 38 1 0.4091 -1.9143 -1.6824 39 1 0.3972 -0.3510 -2.5333 40 1 1.4814 -1.6530 -3.0788 41 1 3.9462 -1.8261 -1.3316 42 1 2.5029 -2.7540 -0.8349 43 1 2.4107 -1.5344 3.4093 44 1 7.2505 -1.9335 2.0758 45 1 7.9915 -1.2679 5.0494 46 1 9.1544 -1.8695 3.7507 47 1 8.6369 0.1743 2.3392 48 1 7.4737 0.7770 3.6371 49 1 1.4003 -1.5113 1.5557 50 1 2.4213 -0.1068 1.9768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982694412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:26 Heat of formation + Delta-G solvation = 76.803169 kcal Electronic energy + Delta-G solvation = -31782.788163 eV Core-core repulsion = 27812.301959 eV Total energy + Delta-G solvation = -3970.486204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.57528 -41.52114 -39.39428 -38.03844 -36.40398 -34.54027 -33.26606 -32.46193 -32.36967 -31.36395 -28.47733 -27.43710 -26.99660 -26.40052 -25.04907 -24.36255 -23.34136 -23.02838 -21.64620 -20.94518 -20.29298 -19.40301 -18.94303 -18.22565 -17.51702 -16.83692 -16.67496 -16.55972 -16.19791 -15.92143 -15.76298 -15.60274 -15.49026 -14.89036 -14.63828 -14.46905 -14.24713 -14.10726 -13.42075 -13.33972 -13.20495 -13.12811 -12.99330 -12.91295 -12.70453 -12.50718 -12.47537 -12.43624 -12.24891 -12.07763 -11.97489 -11.91623 -11.78531 -11.42620 -11.37820 -11.18196 -11.11032 -10.84257 -10.66090 -10.29884 -9.88880 -9.52530 -8.75127 -7.91454 -5.31653 0.55626 0.97924 1.44221 1.45597 1.54902 1.71983 2.05059 2.36488 2.47923 2.97379 3.28389 3.32193 3.46557 3.51172 3.60180 3.86740 3.93831 3.96115 4.02092 4.10112 4.17349 4.26186 4.35072 4.39475 4.43707 4.48745 4.60099 4.64962 4.70826 4.77704 4.84727 4.86634 4.89683 4.96399 5.00411 5.11394 5.14192 5.19845 5.22010 5.26495 5.29709 5.33585 5.34791 5.45922 5.51041 5.55494 5.67552 5.79666 6.20856 6.25896 6.48631 6.66398 7.00036 7.24091 7.69264 8.53270 9.23389 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.003613 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.422719 B = 7747.564674 C = 8753.969903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 C 0.138 3.862 4 N -0.616 5.616 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.058 4.058 8 N -0.947 5.947 9 Si 0.974 3.026 10 H -0.288 1.288 11 H -0.296 1.296 12 H -0.262 1.262 13 C 0.190 3.810 14 C -0.083 4.083 15 C -0.112 4.112 16 C 0.123 3.877 17 N -0.610 5.610 18 C 0.604 3.396 19 O -0.590 6.590 20 C -0.311 4.311 21 C 0.136 3.864 22 N -0.442 5.442 23 H 0.464 0.536 24 N -0.313 5.313 25 C 0.149 3.851 26 C -0.113 4.113 27 C -0.140 4.140 28 C -0.164 4.164 29 C 0.109 3.891 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.057 0.943 34 H -0.002 1.002 35 H 0.247 0.753 36 H -0.023 1.023 37 H 0.034 0.966 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.233 0.767 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.118 0.882 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -10.696 18.180 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C 0.012 3.988 4 N -0.340 5.340 5 C -0.368 4.368 6 H 0.095 0.905 7 C -0.252 4.252 8 N -0.594 5.594 9 Si 0.801 3.199 10 H -0.215 1.215 11 H -0.222 1.222 12 H -0.187 1.187 13 C 0.065 3.935 14 C -0.086 4.086 15 C -0.169 4.169 16 C 0.000 4.000 17 N -0.341 5.341 18 C 0.396 3.604 19 O -0.472 6.472 20 C -0.326 4.326 21 C -0.018 4.018 22 N -0.148 5.148 23 H 0.313 0.687 24 N -0.136 5.136 25 C -0.018 4.018 26 C -0.133 4.133 27 C -0.178 4.178 28 C -0.202 4.202 29 C -0.013 4.013 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.015 0.985 35 H 0.056 0.944 36 H -0.005 1.005 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.249 0.751 44 H 0.132 0.868 45 H 0.123 0.877 46 H 0.135 0.865 47 H 0.123 0.877 48 H 0.109 0.891 49 H 0.136 0.864 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.683 -10.590 18.957 22.719 hybrid contribution 0.317 1.082 -1.794 2.119 sum -6.366 -9.507 17.162 20.627 Atomic orbital electron populations 1.21604 0.90069 1.03154 1.02312 1.22322 0.97614 0.94179 0.93138 1.21892 0.95787 0.95336 0.85763 1.45526 1.74079 1.08187 1.06188 1.19310 1.13400 0.95945 1.08157 0.90504 1.25883 0.96163 1.01132 1.02015 1.70134 1.21782 1.39535 1.27955 0.85169 0.78297 0.79061 0.77332 1.21479 1.22209 1.18686 1.21516 0.91562 0.84188 0.96265 1.22353 0.95883 0.94054 0.96289 1.21571 0.96743 1.00715 0.97899 1.21998 0.98261 0.98157 0.81559 1.48259 1.16583 1.57313 1.11948 1.17250 0.80327 0.76982 0.85888 1.90699 1.37709 1.47774 1.70974 1.20099 0.94053 1.24500 0.93909 1.23801 1.00450 0.93333 0.84203 1.46063 1.04746 1.53942 1.10093 0.68722 1.76994 0.91494 1.27011 1.18117 1.21472 0.94791 0.95547 0.89994 1.20500 0.86105 1.04756 1.01955 1.23045 0.97813 1.00050 0.96853 1.23022 1.02146 0.91633 1.03405 1.22586 0.86524 0.95942 0.96213 0.89643 0.90560 0.93660 0.92484 0.98453 0.94407 1.00520 0.94740 0.89079 0.93113 0.93593 0.94044 0.88809 0.75129 0.86772 0.87666 0.86546 0.87705 0.89092 0.86422 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 7.53 71.98 0.54 -1.81 16 2 C -0.07 -1.99 1.08 -50.67 -0.05 -2.05 16 3 C 0.14 5.43 6.32 86.52 0.55 5.98 16 4 N -0.62 -31.45 3.38 -683.66 -2.31 -33.77 16 5 C -0.24 -13.36 10.31 84.03 0.87 -12.49 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.06 -3.32 5.42 84.86 0.46 -2.86 16 8 N -0.95 -59.12 11.25 21.65 0.24 -58.88 16 9 Si 0.97 46.02 29.56 68.60 2.03 48.05 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 C 0.19 9.46 4.89 86.15 0.42 9.88 16 14 C -0.08 -2.86 1.06 -50.77 -0.05 -2.92 16 15 C -0.11 -3.20 7.45 71.98 0.54 -2.67 16 16 C 0.12 4.06 5.97 86.50 0.52 4.57 16 17 N -0.61 -18.62 3.32 -818.60 -2.72 -21.33 16 18 C 0.60 21.12 7.77 86.67 0.67 21.79 16 19 O -0.59 -25.63 15.51 -4.04 -0.06 -25.69 16 20 C -0.31 -8.73 5.79 -20.15 -0.12 -8.85 16 21 C 0.14 2.26 10.12 84.27 0.85 3.11 16 22 N -0.44 -6.83 7.29 -56.31 -0.41 -7.24 16 23 H 0.46 2.98 8.96 -213.43 -1.91 1.06 16 24 N -0.31 -7.71 12.22 -46.68 -0.57 -8.28 16 25 C 0.15 4.37 6.79 43.51 0.30 4.66 16 26 C -0.11 -3.37 5.87 -11.54 -0.07 -3.44 16 27 C -0.14 -3.19 10.14 30.62 0.31 -2.87 16 28 C -0.16 -4.30 10.24 30.62 0.31 -3.99 16 29 C 0.11 2.38 4.29 86.60 0.37 2.75 16 30 H 0.08 1.25 7.09 -2.39 -0.02 1.24 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.18 7.17 -2.39 -0.02 1.16 16 33 H 0.06 2.09 7.90 -2.39 -0.02 2.07 16 34 H 0.00 -0.10 7.55 -2.39 -0.02 -0.12 16 35 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 36 H -0.02 -1.36 7.51 -2.39 -0.02 -1.38 16 37 H 0.03 1.93 6.89 -2.39 -0.02 1.91 16 38 H 0.09 1.83 7.10 -2.39 -0.02 1.81 16 39 H 0.05 1.62 7.16 -2.39 -0.02 1.60 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 1.69 7.29 -2.39 -0.02 1.67 16 42 H 0.09 2.45 7.88 -2.38 -0.02 2.43 16 43 H 0.23 1.58 6.15 -2.91 -0.02 1.56 16 44 H 0.11 3.96 6.72 -2.39 -0.02 3.94 16 45 H 0.10 2.27 7.90 -2.39 -0.02 2.26 16 46 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.12 1.38 7.54 -2.39 -0.02 1.36 16 50 H 0.09 1.72 5.87 -2.39 -0.01 1.71 16 Total: -1.00 -84.71 388.41 1.67 -83.04 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -0.94 Total: 15.29 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.41 Total: 8.81 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.76 Total: -129.49 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -84.71 1.67 -83.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982694412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.846 kcal (2) G-P(sol) polarization free energy of solvation -84.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds