Wall clock time and date at job start Wed Apr 1 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53758 * 112.06612 * 2 1 4 4 N 1.47207 * 106.40556 * 218.99297 * 3 2 1 5 5 C 1.36940 * 126.69996 * 211.29710 * 4 3 2 6 6 H 1.08003 * 119.99479 * 165.69096 * 5 4 3 7 7 C 1.38804 * 120.00008 * 345.68472 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70749 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70703 * 7 5 4 10 10 H 1.48499 * 109.47137 * 59.99982 * 9 7 5 11 11 H 1.48496 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46625 * 300.00079 * 9 7 5 13 13 C 1.47206 * 106.59396 * 31.55360 * 4 3 2 14 14 C 1.54037 * 106.26339 * 328.37584 * 13 4 3 15 15 C 1.52997 * 112.76881 * 141.67630 * 14 13 4 16 16 C 1.56813 * 109.44883 * 268.28257 * 14 13 4 17 17 N 1.48108 * 105.10256 * 88.54431 * 16 14 13 18 18 C 1.34778 * 127.84596 * 219.46042 * 17 16 14 19 19 O 1.21285 * 119.99834 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99900 * 0.02562 * 18 17 16 21 21 C 1.53000 * 109.47029 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47029 * 179.97438 * 21 20 18 23 23 C 1.38392 * 119.99929 * 124.72612 * 22 21 20 24 24 N 1.32131 * 119.99550 * 179.78247 * 23 22 21 25 25 C 1.32155 * 119.99658 * 0.48933 * 24 23 22 26 26 C 1.38340 * 120.00700 * 359.74142 * 25 24 23 27 27 N 1.32125 * 120.00245 * 305.00063 * 22 21 20 28 28 C 1.48112 * 104.31062 * 39.46174 * 17 16 14 29 29 H 1.09004 * 109.47324 * 58.98890 * 1 2 3 30 30 H 1.09003 * 109.47343 * 178.98454 * 1 2 3 31 31 H 1.09005 * 109.47450 * 298.98748 * 1 2 3 32 32 H 1.08994 * 110.06959 * 99.75668 * 3 2 1 33 33 H 1.08999 * 110.07147 * 338.22190 * 3 2 1 34 34 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.06421 * 87.68860 * 13 4 3 36 36 H 1.08993 * 110.06556 * 209.21464 * 13 4 3 37 37 H 1.08998 * 109.47058 * 301.37785 * 15 14 13 38 38 H 1.09003 * 109.47583 * 61.37569 * 15 14 13 39 39 H 1.08998 * 109.47435 * 181.38184 * 15 14 13 40 40 H 1.09003 * 110.47192 * 329.46739 * 16 14 13 41 41 H 1.09002 * 110.02773 * 207.39272 * 16 14 13 42 42 H 1.09002 * 109.47123 * 300.00056 * 20 18 17 43 43 H 1.08998 * 109.47104 * 59.99579 * 20 18 17 44 44 H 1.08996 * 109.46915 * 300.00233 * 21 20 18 45 45 H 1.09001 * 109.46971 * 59.99955 * 21 20 18 46 46 H 1.07998 * 120.00150 * 0.02562 * 23 22 21 47 47 H 1.08004 * 119.99286 * 179.72060 * 25 24 23 48 48 H 1.07999 * 120.00352 * 180.02562 * 26 25 24 49 49 H 1.08996 * 110.38927 * 201.41167 * 28 17 16 50 50 H 1.09000 * 110.38972 * 79.02767 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2809 1.3979 -0.8886 5 6 4.4131 2.1595 -0.7725 6 1 5.2983 1.9000 -1.3342 7 6 4.4229 3.2650 0.0668 8 7 3.3010 3.6902 0.6083 9 14 6.0282 4.1495 0.4279 10 1 6.6100 4.6569 -0.8407 11 1 5.7705 5.2883 1.3453 12 1 6.9804 3.2057 1.0664 13 6 2.9969 0.3968 -1.9297 14 6 2.1156 -0.6780 -1.2658 15 6 1.0222 -1.2053 -2.1970 16 6 3.0265 -1.8157 -0.6872 17 7 3.3640 -1.3786 0.6871 18 6 4.5442 -1.4988 1.3266 19 8 4.6636 -1.0879 2.4615 20 6 5.7156 -2.1437 0.6316 21 6 6.9235 -2.1535 1.5707 22 6 8.0946 -2.7990 0.8759 23 6 9.2942 -2.1180 0.7646 24 7 10.3224 -2.6857 0.1592 25 6 10.2021 -3.9000 -0.3484 26 6 9.0015 -4.5788 -0.2413 27 7 7.9745 -4.0129 0.3683 28 6 2.1099 -0.7793 1.1990 29 1 -0.3634 0.5295 -0.8808 30 1 -0.3634 -1.0275 -0.0182 31 1 -0.3634 0.4980 0.8989 32 1 2.4089 1.7064 1.0090 33 1 1.3670 2.1288 -0.3798 34 1 3.3079 4.4630 1.1945 35 1 2.4636 0.8611 -2.7593 36 1 3.9265 -0.0482 -2.2842 37 1 0.3886 -0.3786 -2.5181 38 1 1.4811 -1.6713 -3.0690 39 1 0.4178 -1.9417 -1.6674 40 1 3.9316 -1.9207 -1.2854 41 1 2.4775 -2.7571 -0.6622 42 1 5.4580 -3.1673 0.3596 43 1 5.9599 -1.5792 -0.2682 44 1 7.1808 -1.1298 1.8423 45 1 6.6793 -2.7178 2.4708 46 1 9.3912 -1.1242 1.1759 47 1 11.0412 -4.3622 -0.8472 48 1 8.9034 -5.5713 -0.6558 49 1 2.3228 -0.1014 2.0255 50 1 1.4177 -1.5596 1.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982712541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:38 Heat of formation + Delta-G solvation = 41.534307 kcal Electronic energy + Delta-G solvation = -31582.382362 eV Core-core repulsion = 27610.366786 eV Total energy + Delta-G solvation = -3972.015577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.23025 -40.24924 -38.33468 -34.99529 -34.62170 -33.55489 -32.95499 -31.69613 -30.67685 -30.45000 -27.09179 -26.23299 -25.71113 -25.09127 -24.87506 -24.44937 -22.41808 -21.79608 -19.97716 -18.94206 -17.77292 -17.61742 -17.19057 -16.93823 -16.48510 -15.75611 -15.59472 -15.30414 -14.87803 -14.50253 -14.47399 -13.90106 -13.73304 -13.46546 -13.29217 -13.18102 -12.95985 -12.72507 -12.49570 -12.26127 -12.05043 -11.84967 -11.72282 -11.67561 -11.49719 -11.37656 -11.35676 -11.33560 -11.00878 -10.80067 -10.78629 -10.63513 -10.05509 -10.03872 -9.78734 -9.69795 -9.51770 -9.48642 -9.27614 -9.18319 -8.61829 -8.16021 -6.76278 -5.73978 -3.06592 0.61086 0.97631 3.10518 3.36890 3.41645 3.47196 3.47463 3.56639 3.88737 4.12682 4.32020 4.50872 4.59416 4.76282 4.84698 4.92206 5.05148 5.17839 5.19480 5.27400 5.35216 5.39162 5.43897 5.49323 5.56712 5.64782 5.67145 5.74523 5.77785 5.90359 5.95813 6.02266 6.06908 6.10211 6.12895 6.16644 6.26296 6.29955 6.33069 6.48674 6.51044 6.60410 6.68454 6.84511 6.96290 7.11198 7.42990 7.59589 7.62488 7.77992 8.06507 8.29334 8.64349 9.19537 9.82480 10.54600 11.39913 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.004147 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.937540 B = 6750.072724 C = 8525.771708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C 0.182 3.818 4 N -0.588 5.588 5 C -0.227 4.227 6 H 0.070 0.930 7 C 0.000 4.000 8 N -0.913 5.913 9 Si 0.905 3.095 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.146 3.854 14 C -0.086 4.086 15 C -0.123 4.123 16 C 0.118 3.882 17 N -0.605 5.605 18 C 0.544 3.456 19 O -0.546 6.546 20 C -0.123 4.123 21 C -0.052 4.052 22 C 0.091 3.909 23 C 0.056 3.944 24 N -0.437 5.437 25 C 0.036 3.964 26 C 0.052 3.948 27 N -0.437 5.437 28 C 0.126 3.874 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.253 0.747 35 H 0.017 0.983 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.172 0.828 47 H 0.167 0.833 48 H 0.168 0.832 49 H 0.082 0.918 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -17.197 -3.523 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 C 0.056 3.944 4 N -0.311 5.311 5 C -0.355 4.355 6 H 0.088 0.912 7 C -0.197 4.197 8 N -0.559 5.559 9 Si 0.735 3.265 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.210 1.210 13 C 0.020 3.980 14 C -0.088 4.088 15 C -0.180 4.180 16 C -0.006 4.006 17 N -0.337 5.337 18 C 0.333 3.667 19 O -0.424 6.424 20 C -0.164 4.164 21 C -0.091 4.091 22 C -0.049 4.049 23 C -0.104 4.104 24 N -0.151 5.151 25 C -0.124 4.124 26 C -0.108 4.108 27 N -0.153 5.153 28 C 0.004 3.996 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.189 0.811 47 H 0.184 0.816 48 H 0.185 0.815 49 H 0.100 0.900 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.536 -16.762 -2.721 17.170 hybrid contribution 0.879 0.533 -0.028 1.028 sum 3.415 -16.229 -2.749 16.811 Atomic orbital electron populations 1.21623 0.93808 1.00674 1.01926 1.22573 0.94726 0.99762 0.93160 1.21190 0.88056 0.88034 0.97093 1.44286 1.17163 1.43488 1.26212 1.18810 0.88483 1.04327 1.23898 0.91191 1.24795 0.96867 0.97080 1.00965 1.69905 1.24248 1.26407 1.35382 0.86309 0.83178 0.79145 0.77820 1.21165 1.21555 1.21042 1.21342 0.95293 0.89668 0.91733 1.22812 0.95220 0.95273 0.95487 1.21598 0.97456 1.00742 0.98240 1.22783 0.98624 0.96164 0.83008 1.48535 1.10563 1.59278 1.15339 1.19929 0.82136 0.78693 0.85941 1.90683 1.82775 1.50105 1.18840 1.21458 0.92768 1.02430 0.99699 1.20287 0.89685 1.01586 0.97498 1.22380 0.96343 0.91061 0.95132 1.23749 0.89232 1.01218 0.96224 1.68468 1.30701 1.10023 1.05900 1.23742 0.98764 0.91868 0.98009 1.23766 0.89842 1.01080 0.96112 1.68273 1.30796 1.09760 1.06435 1.22316 0.84084 0.96001 0.97248 0.92206 0.93147 0.92690 0.90683 0.96109 0.93660 0.96494 0.94448 0.91917 0.92941 0.92640 0.90950 0.91922 0.88587 0.88939 0.88602 0.88811 0.81111 0.81564 0.81455 0.90005 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 7.50 37.16 0.28 -1.46 16 2 C -0.10 -1.74 1.06 -152.33 -0.16 -1.90 16 3 C 0.18 4.25 4.70 -3.26 -0.02 4.24 16 4 N -0.59 -14.47 3.38 -171.00 -0.58 -15.05 16 5 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 6 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 7 C 0.00 0.01 5.38 -17.43 -0.09 -0.08 16 8 N -0.91 -26.95 10.87 55.49 0.60 -26.34 16 9 Si 0.91 22.48 29.56 -169.99 -5.03 17.46 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.15 2.89 6.35 -3.12 -0.02 2.87 16 14 C -0.09 -1.34 1.15 -150.81 -0.17 -1.51 16 15 C -0.12 -1.48 7.65 37.16 0.28 -1.20 16 16 C 0.12 1.70 6.06 -1.10 -0.01 1.70 16 17 N -0.61 -10.57 3.32 -167.86 -0.56 -11.13 16 18 C 0.54 10.06 7.91 -10.99 -0.09 9.97 16 19 O -0.55 -12.03 16.25 5.55 0.09 -11.94 16 20 C -0.12 -1.80 4.54 -27.88 -0.13 -1.92 16 21 C -0.05 -0.71 4.92 -27.88 -0.14 -0.84 16 22 C 0.09 1.15 6.18 -82.41 -0.51 0.64 16 23 C 0.06 0.68 10.85 -17.37 -0.19 0.50 16 24 N -0.44 -5.33 10.50 -13.06 -0.14 -5.47 16 25 C 0.04 0.34 11.22 -17.37 -0.20 0.14 16 26 C 0.05 0.49 11.22 -17.37 -0.20 0.29 16 27 N -0.44 -5.28 10.06 -9.29 -0.09 -5.37 16 28 C 0.13 2.23 6.05 -2.47 -0.01 2.21 16 29 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 30 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 2.04 6.02 -51.93 -0.31 1.73 16 33 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.02 0.35 7.93 -51.93 -0.41 -0.06 16 36 H 0.04 0.72 7.47 -51.93 -0.39 0.33 16 37 H 0.06 0.78 7.09 -51.93 -0.37 0.42 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.58 7.16 -51.93 -0.37 0.21 16 40 H 0.07 1.00 6.68 -51.93 -0.35 0.65 16 41 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16 42 H 0.10 1.24 7.96 -51.93 -0.41 0.83 16 43 H 0.09 1.39 7.95 -51.93 -0.41 0.97 16 44 H 0.10 1.38 7.84 -51.93 -0.41 0.97 16 45 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 46 H 0.17 1.85 7.95 -52.49 -0.42 1.43 16 47 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 48 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 49 H 0.08 1.70 7.16 -51.93 -0.37 1.33 16 50 H 0.06 0.85 7.97 -51.93 -0.41 0.43 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -34.24 394.27 -9.13 -43.37 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.86 Total: 1.30 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.52 Total: 7.23 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.76 Total: -63.36 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.24 -9.13 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982712541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.906 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds