Wall clock time and date at job start Wed Apr 1 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53758 * 112.06612 * 2 1 4 4 N 1.47207 * 106.40556 * 218.99297 * 3 2 1 5 5 C 1.36940 * 126.69996 * 211.29710 * 4 3 2 6 6 H 1.08003 * 119.99479 * 165.69096 * 5 4 3 7 7 C 1.38804 * 120.00008 * 345.68472 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70749 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70703 * 7 5 4 10 10 H 1.48499 * 109.47137 * 59.99982 * 9 7 5 11 11 H 1.48496 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46625 * 300.00079 * 9 7 5 13 13 C 1.47206 * 106.59396 * 31.55360 * 4 3 2 14 14 C 1.54037 * 106.26339 * 328.37584 * 13 4 3 15 15 C 1.52997 * 112.76881 * 141.67630 * 14 13 4 16 16 C 1.56813 * 109.44883 * 268.28257 * 14 13 4 17 17 N 1.48108 * 105.10256 * 88.54431 * 16 14 13 18 18 C 1.34778 * 127.84596 * 219.46042 * 17 16 14 19 19 O 1.21285 * 119.99834 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99900 * 0.02562 * 18 17 16 21 21 C 1.53000 * 109.47029 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47029 * 179.97438 * 21 20 18 23 23 C 1.38392 * 119.99929 * 124.72612 * 22 21 20 24 24 N 1.32131 * 119.99550 * 179.78247 * 23 22 21 25 25 C 1.32155 * 119.99658 * 0.48933 * 24 23 22 26 26 C 1.38340 * 120.00700 * 359.74142 * 25 24 23 27 27 N 1.32125 * 120.00245 * 305.00063 * 22 21 20 28 28 C 1.48112 * 104.31062 * 39.46174 * 17 16 14 29 29 H 1.09004 * 109.47324 * 58.98890 * 1 2 3 30 30 H 1.09003 * 109.47343 * 178.98454 * 1 2 3 31 31 H 1.09005 * 109.47450 * 298.98748 * 1 2 3 32 32 H 1.08994 * 110.06959 * 99.75668 * 3 2 1 33 33 H 1.08999 * 110.07147 * 338.22190 * 3 2 1 34 34 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.06421 * 87.68860 * 13 4 3 36 36 H 1.08993 * 110.06556 * 209.21464 * 13 4 3 37 37 H 1.08998 * 109.47058 * 301.37785 * 15 14 13 38 38 H 1.09003 * 109.47583 * 61.37569 * 15 14 13 39 39 H 1.08998 * 109.47435 * 181.38184 * 15 14 13 40 40 H 1.09003 * 110.47192 * 329.46739 * 16 14 13 41 41 H 1.09002 * 110.02773 * 207.39272 * 16 14 13 42 42 H 1.09002 * 109.47123 * 300.00056 * 20 18 17 43 43 H 1.08998 * 109.47104 * 59.99579 * 20 18 17 44 44 H 1.08996 * 109.46915 * 300.00233 * 21 20 18 45 45 H 1.09001 * 109.46971 * 59.99955 * 21 20 18 46 46 H 1.07998 * 120.00150 * 0.02562 * 23 22 21 47 47 H 1.08004 * 119.99286 * 179.72060 * 25 24 23 48 48 H 1.07999 * 120.00352 * 180.02562 * 26 25 24 49 49 H 1.08996 * 110.38927 * 201.41167 * 28 17 16 50 50 H 1.09000 * 110.38972 * 79.02767 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2809 1.3979 -0.8886 5 6 4.4131 2.1595 -0.7725 6 1 5.2983 1.9000 -1.3342 7 6 4.4229 3.2650 0.0668 8 7 3.3010 3.6902 0.6083 9 14 6.0282 4.1495 0.4279 10 1 6.6100 4.6569 -0.8407 11 1 5.7705 5.2883 1.3453 12 1 6.9804 3.2057 1.0664 13 6 2.9969 0.3968 -1.9297 14 6 2.1156 -0.6780 -1.2658 15 6 1.0222 -1.2053 -2.1970 16 6 3.0265 -1.8157 -0.6872 17 7 3.3640 -1.3786 0.6871 18 6 4.5442 -1.4988 1.3266 19 8 4.6636 -1.0879 2.4615 20 6 5.7156 -2.1437 0.6316 21 6 6.9235 -2.1535 1.5707 22 6 8.0946 -2.7990 0.8759 23 6 9.2942 -2.1180 0.7646 24 7 10.3224 -2.6857 0.1592 25 6 10.2021 -3.9000 -0.3484 26 6 9.0015 -4.5788 -0.2413 27 7 7.9745 -4.0129 0.3683 28 6 2.1099 -0.7793 1.1990 29 1 -0.3634 0.5295 -0.8808 30 1 -0.3634 -1.0275 -0.0182 31 1 -0.3634 0.4980 0.8989 32 1 2.4089 1.7064 1.0090 33 1 1.3670 2.1288 -0.3798 34 1 3.3079 4.4630 1.1945 35 1 2.4636 0.8611 -2.7593 36 1 3.9265 -0.0482 -2.2842 37 1 0.3886 -0.3786 -2.5181 38 1 1.4811 -1.6713 -3.0690 39 1 0.4178 -1.9417 -1.6674 40 1 3.9316 -1.9207 -1.2854 41 1 2.4775 -2.7571 -0.6622 42 1 5.4580 -3.1673 0.3596 43 1 5.9599 -1.5792 -0.2682 44 1 7.1808 -1.1298 1.8423 45 1 6.6793 -2.7178 2.4708 46 1 9.3912 -1.1242 1.1759 47 1 11.0412 -4.3622 -0.8472 48 1 8.9034 -5.5713 -0.6558 49 1 2.3228 -0.1014 2.0255 50 1 1.4177 -1.5596 1.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982712541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:37 Heat of formation + Delta-G solvation = 18.430905 kcal Electronic energy + Delta-G solvation = -31583.384201 eV Core-core repulsion = 27610.366786 eV Total energy + Delta-G solvation = -3973.017415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.08922 -41.65545 -39.80788 -36.40970 -35.92763 -34.61607 -34.45816 -33.12094 -32.45086 -31.45919 -28.36995 -27.95146 -26.91844 -26.52024 -26.09886 -25.38292 -23.99026 -22.96234 -21.57206 -20.31794 -19.18991 -18.78182 -18.52083 -18.09749 -17.73060 -17.09489 -16.86940 -16.58290 -16.32650 -15.94650 -15.66549 -15.57601 -14.86966 -14.84078 -14.47494 -14.42547 -14.40833 -14.13837 -13.60520 -13.57901 -13.44496 -13.30333 -13.10380 -12.88675 -12.82277 -12.73199 -12.59797 -12.53700 -12.43393 -12.36387 -12.13638 -12.02916 -11.95083 -11.78015 -11.44962 -11.15002 -11.03690 -10.87844 -10.69320 -10.18870 -10.03976 -9.59577 -8.80069 -7.91255 -5.23463 -0.20232 0.13724 1.36851 1.41642 1.45841 1.68091 2.09050 2.44959 2.71655 3.03612 3.28520 3.34156 3.42517 3.50271 3.56554 3.72280 3.76523 3.89928 3.92578 4.07519 4.10001 4.19596 4.37620 4.39521 4.43768 4.46434 4.52553 4.59482 4.63575 4.65354 4.77262 4.83711 4.88528 4.90073 4.91943 4.98511 4.99685 5.11334 5.17865 5.25587 5.32599 5.34678 5.43956 5.44903 5.47984 5.54068 5.66295 5.82423 6.21764 6.29415 6.69893 6.80351 7.06508 7.22592 7.76697 8.47903 9.21440 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.004147 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.937540 B = 6750.072724 C = 8525.771708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C 0.192 3.808 4 N -0.610 5.610 5 C -0.229 4.229 6 H 0.073 0.927 7 C -0.059 4.059 8 N -0.944 5.944 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.296 1.296 12 H -0.283 1.283 13 C 0.139 3.861 14 C -0.073 4.073 15 C -0.116 4.116 16 C 0.117 3.883 17 N -0.611 5.611 18 C 0.530 3.470 19 O -0.596 6.596 20 C -0.107 4.107 21 C -0.045 4.045 22 C 0.079 3.921 23 C 0.038 3.962 24 N -0.461 5.461 25 C 0.043 3.957 26 C 0.059 3.941 27 N -0.453 5.453 28 C 0.126 3.874 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.023 0.977 33 H -0.012 1.012 34 H 0.244 0.756 35 H 0.015 0.985 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.171 0.829 47 H 0.206 0.794 48 H 0.210 0.790 49 H 0.034 0.966 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -21.390 -6.047 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C 0.066 3.934 4 N -0.333 5.333 5 C -0.358 4.358 6 H 0.090 0.910 7 C -0.253 4.253 8 N -0.593 5.593 9 Si 0.789 3.211 10 H -0.197 1.197 11 H -0.222 1.222 12 H -0.210 1.210 13 C 0.014 3.986 14 C -0.075 4.075 15 C -0.174 4.174 16 C -0.005 4.005 17 N -0.342 5.342 18 C 0.321 3.679 19 O -0.477 6.477 20 C -0.147 4.147 21 C -0.084 4.084 22 C -0.060 4.060 23 C -0.120 4.120 24 N -0.176 5.176 25 C -0.118 4.118 26 C -0.101 4.101 27 N -0.169 5.169 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.006 0.994 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.188 0.812 47 H 0.222 0.778 48 H 0.226 0.774 49 H 0.053 0.947 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.518 -20.964 -5.294 21.768 hybrid contribution 0.930 1.780 0.669 2.117 sum 3.449 -19.184 -4.625 20.033 Atomic orbital electron populations 1.21616 0.90820 1.03202 1.01754 1.22457 0.96883 0.95498 0.94426 1.20941 0.87143 0.91520 0.93794 1.44544 1.16621 1.44042 1.28119 1.19148 0.89680 1.04145 1.22855 0.90958 1.25533 0.99539 0.98482 1.01721 1.70111 1.26005 1.26750 1.36395 0.85415 0.79966 0.77812 0.77859 1.19684 1.22176 1.20999 1.21608 0.96551 0.89656 0.90810 1.22804 0.95707 0.94302 0.94688 1.21602 0.96218 1.01256 0.98291 1.23061 0.99368 0.97072 0.80996 1.48744 1.10173 1.58613 1.16695 1.20699 0.83210 0.78336 0.85673 1.90653 1.83642 1.52259 1.21158 1.21374 0.91294 1.03067 0.98917 1.20105 0.90159 1.00680 0.97456 1.22046 0.95802 0.91796 0.96313 1.23759 0.89529 1.01605 0.97079 1.68493 1.30739 1.11628 1.06695 1.24445 1.00083 0.90742 0.96500 1.24465 0.88891 1.02284 0.94507 1.68252 1.32226 1.09346 1.07032 1.22304 0.85166 0.96318 0.95917 0.92026 0.89050 0.93450 0.95840 0.99422 0.94647 0.96707 0.93854 0.92439 0.90789 0.89651 0.90017 0.87487 0.86139 0.89329 0.90525 0.89362 0.81208 0.77775 0.77360 0.94700 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 7.50 71.98 0.54 -2.49 16 2 C -0.09 -3.09 1.06 -50.77 -0.05 -3.14 16 3 C 0.19 9.45 4.70 86.50 0.41 9.86 16 4 N -0.61 -30.98 3.38 -694.94 -2.35 -33.33 16 5 C -0.23 -13.06 10.28 84.03 0.86 -12.20 16 6 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 7 C -0.06 -3.50 5.38 84.86 0.46 -3.04 16 8 N -0.94 -59.33 10.87 21.65 0.24 -59.10 16 9 Si 0.96 48.21 29.56 68.60 2.03 50.24 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 13 C 0.14 5.36 6.35 86.60 0.55 5.91 16 14 C -0.07 -2.08 1.15 -49.79 -0.06 -2.13 16 15 C -0.12 -2.21 7.65 71.98 0.55 -1.66 16 16 C 0.12 2.95 6.06 87.41 0.53 3.48 16 17 N -0.61 -20.80 3.32 -803.38 -2.67 -23.47 16 18 C 0.53 19.93 7.91 87.66 0.69 20.62 16 19 O -0.60 -27.75 16.25 -3.04 -0.05 -27.80 16 20 C -0.11 -3.06 4.54 29.85 0.14 -2.92 16 21 C -0.04 -1.27 4.92 29.85 0.15 -1.12 16 22 C 0.08 1.97 6.18 42.55 0.26 2.23 16 23 C 0.04 0.95 10.85 84.68 0.92 1.87 16 24 N -0.46 -10.67 10.50 -195.22 -2.05 -12.72 16 25 C 0.04 0.67 11.22 84.67 0.95 1.62 16 26 C 0.06 0.90 11.22 84.67 0.95 1.85 16 27 N -0.45 -9.96 10.06 -183.30 -1.84 -11.80 16 28 C 0.13 4.41 6.05 86.52 0.52 4.94 16 29 H 0.06 1.60 7.10 -2.38 -0.02 1.59 16 30 H 0.09 1.68 7.16 -2.39 -0.02 1.67 16 31 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.02 1.38 6.02 -2.39 -0.01 1.36 16 33 H -0.01 -0.66 7.88 -2.39 -0.02 -0.68 16 34 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.02 0.59 7.93 -2.39 -0.02 0.57 16 36 H 0.04 1.60 7.47 -2.39 -0.02 1.59 16 37 H 0.06 1.20 7.09 -2.39 -0.02 1.18 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.19 7.16 -2.39 -0.02 1.18 16 40 H 0.08 1.95 6.68 -2.39 -0.02 1.93 16 41 H 0.11 1.88 8.00 -2.39 -0.02 1.86 16 42 H 0.12 2.84 7.96 -2.39 -0.02 2.82 16 43 H 0.09 2.62 7.95 -2.39 -0.02 2.60 16 44 H 0.08 2.40 7.84 -2.39 -0.02 2.38 16 45 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 46 H 0.17 3.94 7.95 -2.91 -0.02 3.92 16 47 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 48 H 0.21 1.30 8.06 -2.91 -0.02 1.27 16 49 H 0.03 1.54 7.16 -2.39 -0.02 1.53 16 50 H 0.09 2.60 7.97 -2.39 -0.02 2.58 16 Total: -1.00 -82.64 394.27 2.60 -80.04 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.93 Total: 14.27 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 8.37 Total: 23.66 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -8.68 Total: -140.41 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -82.64 2.60 -80.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982712541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.467 kcal (2) G-P(sol) polarization free energy of solvation -82.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds