Wall clock time and date at job start Wed Apr 1 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48497 * 109.46659 * 274.98847 * 3 2 1 5 5 H 1.48492 * 109.47379 * 34.98707 * 3 2 1 6 6 H 1.48499 * 109.47004 * 154.99342 * 3 2 1 7 7 C 1.38811 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99790 * 186.23276 * 7 2 1 9 9 N 1.36937 * 120.00001 * 6.24028 * 7 2 1 10 10 C 1.49298 * 127.10338 * 355.93972 * 9 7 2 11 11 C 1.56228 * 106.51046 * 171.30657 * 10 9 7 12 12 C 1.52137 * 100.81343 * 336.55152 * 11 10 9 13 13 N 1.46500 * 111.09297 * 286.02086 * 12 11 10 14 14 C 1.34772 * 119.99747 * 288.30462 * 13 12 11 15 15 O 1.21623 * 120.00316 * 355.32990 * 14 13 12 16 16 C 1.47168 * 119.99628 * 175.32112 * 14 13 12 17 17 C 1.38403 * 126.88550 * 5.60653 * 16 14 13 18 18 C 1.39672 * 105.35712 * 179.91336 * 17 16 14 19 19 N 1.30861 * 107.86489 * 0.35199 * 18 17 16 20 20 N 1.28443 * 110.92567 * 359.77175 * 19 18 17 21 21 C 1.46499 * 125.19024 * 180.02562 * 20 19 18 22 22 C 1.53781 * 113.61678 * 42.05384 * 21 20 19 23 23 C 1.53778 * 87.08070 * 220.01926 * 22 21 20 24 24 C 1.53778 * 87.08309 * 25.43409 * 23 22 21 25 25 C 1.51232 * 122.09495 * 151.18166 * 12 11 10 26 26 C 1.55789 * 104.61772 * 218.75177 * 25 12 11 27 27 C 1.56282 * 105.89162 * 7.24851 * 26 25 12 28 28 C 1.42695 * 127.10545 * 175.89331 * 9 7 2 29 29 H 1.08995 * 108.16003 * 104.18967 * 28 9 7 30 30 H 0.96999 * 119.99560 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.04816 * 290.57186 * 10 9 7 32 32 H 1.09005 * 110.05152 * 51.98991 * 10 9 7 33 33 H 1.09003 * 111.14873 * 94.44303 * 11 10 9 34 34 H 1.08997 * 111.14955 * 218.61955 * 11 10 9 35 35 H 0.97001 * 120.00237 * 108.31375 * 13 12 11 36 36 H 1.07994 * 127.31783 * 359.97438 * 17 16 14 37 37 H 1.08003 * 126.06641 * 180.10764 * 18 17 16 38 38 H 1.09004 * 112.85359 * 173.35999 * 21 20 19 39 39 H 1.09002 * 113.60844 * 334.56700 * 22 21 20 40 40 H 1.08996 * 113.61248 * 105.46627 * 22 21 20 41 41 H 1.08999 * 113.61395 * 270.87964 * 23 22 21 42 42 H 1.09007 * 113.60857 * 139.98267 * 23 22 21 43 43 H 1.09004 * 113.60952 * 220.02298 * 24 23 22 44 44 H 1.08997 * 113.69561 * 89.13020 * 24 23 22 45 45 H 1.08992 * 110.40737 * 337.53542 * 25 12 11 46 46 H 1.08998 * 110.40253 * 99.85533 * 25 12 11 47 47 H 1.09003 * 110.19143 * 248.14135 * 26 25 12 48 48 H 1.09003 * 110.17001 * 126.34622 * 26 25 12 49 49 H 1.09003 * 110.97266 * 266.12928 * 27 26 25 50 50 H 1.08994 * 110.97420 * 142.39911 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5045 2.6200 0.8027 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0855 -1.2049 0.1021 9 7 1.3317 -2.3846 -0.1278 10 6 -0.1482 -2.5712 -0.1933 11 6 -0.3908 -4.0696 -0.5631 12 6 0.9268 -4.4131 -1.2417 13 7 1.0047 -3.8132 -2.5760 14 6 0.2467 -4.2993 -3.5786 15 8 -0.4380 -5.2883 -3.3989 16 6 0.2473 -3.6333 -4.8910 17 6 1.0457 -2.5734 -5.2843 18 6 0.6782 -2.3034 -6.6045 19 7 -0.2678 -3.1440 -6.9377 20 7 -0.5440 -3.9337 -5.9632 21 6 -1.5534 -4.9950 -5.9966 22 6 -1.5599 -5.7980 -7.3081 23 6 -3.0949 -5.7852 -7.2164 24 6 -2.9562 -4.4989 -6.3852 25 6 1.4950 -5.8146 -1.2307 26 6 3.0298 -5.6152 -1.0527 27 6 3.2347 -4.0897 -0.7823 28 6 1.8928 -3.6928 -0.2276 29 1 1.7610 -4.1931 0.7317 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5961 -2.3480 0.7750 32 1 -0.5731 -1.9228 -0.9596 33 1 -0.5428 -4.6755 0.3302 34 1 -1.2281 -4.1738 -1.2530 35 1 1.6020 -3.0662 -2.7378 36 1 1.7944 -2.0641 -4.6958 37 1 1.0974 -1.5346 -7.2366 38 1 -1.5427 -5.6176 -5.1019 39 1 -1.1688 -5.2436 -8.1612 40 1 -1.1250 -6.7929 -7.2130 41 1 -3.5058 -6.6250 -6.6561 42 1 -3.5883 -5.6336 -8.1765 43 1 -3.6486 -4.4453 -5.5450 44 1 -2.9469 -3.5887 -6.9848 45 1 1.0863 -6.3838 -0.3959 46 1 1.2822 -6.3182 -2.1736 47 1 3.5552 -5.9095 -1.9613 48 1 3.3887 -6.1986 -0.2048 49 1 3.4480 -3.5546 -1.7076 50 1 4.0239 -3.9261 -0.0486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990716982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:57 Heat of formation + Delta-G solvation = 106.545625 kcal Electronic energy + Delta-G solvation = -32056.585570 eV Core-core repulsion = 28087.389096 eV Total energy + Delta-G solvation = -3969.196474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44822 -40.43449 -38.54960 -37.98287 -34.46978 -33.28884 -31.90498 -31.60411 -30.70714 -29.60377 -26.97754 -25.93865 -25.89250 -25.48302 -24.12307 -23.18787 -21.79750 -20.59385 -20.37914 -19.72479 -19.15125 -18.70456 -17.96110 -16.53320 -16.11508 -15.77976 -15.74917 -15.57418 -14.78750 -14.74062 -14.43540 -14.20836 -13.94123 -13.89408 -13.49898 -13.28490 -12.84744 -12.70600 -12.61082 -12.37738 -12.37078 -11.95778 -11.47302 -11.43597 -11.38078 -11.04908 -11.00021 -10.88261 -10.84516 -10.77557 -10.57702 -10.49568 -10.32341 -10.07682 -9.99560 -9.75842 -9.65841 -9.24801 -9.04200 -8.85136 -8.68426 -8.52660 -6.92201 -5.80258 -3.14177 1.47146 2.50179 2.76011 3.35340 3.41295 3.43527 3.46899 3.61658 4.21313 4.35601 4.40865 4.57237 4.60888 4.69218 4.84099 4.94169 5.18749 5.21687 5.25200 5.42806 5.43514 5.53081 5.55500 5.56145 5.65992 5.67397 5.71809 5.74284 5.77127 5.82247 5.89666 5.92847 5.96377 6.10542 6.18072 6.21808 6.27417 6.32922 6.39046 6.45805 6.58845 6.65879 6.76161 6.85253 6.90428 7.09585 7.44621 7.57180 7.72871 7.89974 8.14318 8.22750 8.52224 9.07954 9.74894 10.43502 11.32195 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003955 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.857559 B = 7077.590095 C = 8167.621591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.138 4.138 12 C 0.132 3.868 13 N -0.669 5.669 14 C 0.591 3.409 15 O -0.554 6.554 16 C -0.032 4.032 17 C -0.187 4.187 18 C -0.007 4.007 19 N -0.283 5.283 20 N -0.247 5.247 21 C 0.111 3.889 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.115 4.115 28 C 0.160 3.840 29 H 0.023 0.977 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -11.271 -11.061 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.307 5.307 10 C 0.053 3.947 11 C -0.177 4.177 12 C 0.044 3.956 13 N -0.319 5.319 14 C 0.376 3.624 15 O -0.434 6.434 16 C -0.160 4.160 17 C -0.216 4.216 18 C -0.183 4.183 19 N -0.115 5.115 20 N -0.034 5.034 21 C 0.011 3.989 22 C -0.178 4.178 23 C -0.174 4.174 24 C -0.181 4.181 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.050 3.950 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.178 0.822 37 H 0.200 0.800 38 H 0.172 0.828 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.669 -12.092 -11.724 16.925 hybrid contribution 1.258 1.766 0.659 2.266 sum -0.411 -10.327 -11.065 15.141 Atomic orbital electron populations 1.69929 1.04958 1.25220 1.56039 1.24806 0.95566 0.97636 1.01778 0.86179 0.78746 0.83772 0.77556 1.21525 1.21811 1.20624 1.19010 0.90853 0.82301 1.44067 0.90219 1.43665 1.01676 1.00164 1.85187 1.22039 0.83332 0.89094 1.00274 1.22792 0.95916 0.99853 0.99168 1.21600 0.98741 0.93135 0.82137 1.45396 1.42435 1.35564 1.08499 1.16853 0.80084 0.83215 0.82203 1.90657 1.43494 1.26244 1.82991 1.21573 1.00043 1.02145 0.92234 1.22327 1.03562 0.98640 0.97047 1.23500 0.97760 1.01025 0.95974 1.73014 1.17803 1.04936 1.15734 1.45706 1.26777 1.24268 1.06679 1.23841 0.85601 0.87183 1.02290 1.23323 0.96995 1.00422 0.97052 1.22681 0.95894 0.97902 1.00909 1.23355 0.95009 0.99042 1.00681 1.21898 0.94893 0.95858 1.02460 1.22841 0.95792 0.96060 1.00835 1.21840 0.97723 0.94806 1.00955 1.20850 0.91682 0.87963 0.94544 0.95941 0.93645 0.94655 0.91572 0.91437 0.91620 0.75607 0.82238 0.79961 0.82799 0.88536 0.90568 0.89464 0.90373 0.90328 0.88872 0.91066 0.90994 0.92225 0.91900 0.91592 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.75 10.57 55.49 0.59 -25.16 16 2 C 0.00 -0.02 5.49 -17.43 -0.10 -0.11 16 3 Si 0.91 21.12 29.56 -169.99 -5.02 16.09 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.23 -6.03 10.28 -15.06 -0.15 -6.18 16 8 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 9 N -0.58 -13.64 3.12 -162.68 -0.51 -14.15 16 10 C 0.18 4.11 5.36 -0.76 0.00 4.11 16 11 C -0.14 -2.66 6.21 -25.44 -0.16 -2.82 16 12 C 0.13 2.32 0.40 -130.70 -0.05 2.26 16 13 N -0.67 -11.65 4.38 -47.71 -0.21 -11.86 16 14 C 0.59 10.33 7.13 -12.64 -0.09 10.24 16 15 O -0.55 -10.25 12.64 5.26 0.07 -10.18 16 16 C -0.03 -0.52 6.96 -82.06 -0.57 -1.09 16 17 C -0.19 -2.79 10.50 -38.99 -0.41 -3.20 16 18 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 19 N -0.28 -4.23 11.14 30.59 0.34 -3.89 16 20 N -0.25 -3.79 3.46 -49.90 -0.17 -3.96 16 21 C 0.11 1.47 4.45 -67.12 -0.30 1.17 16 22 C -0.14 -1.47 7.74 -25.92 -0.20 -1.67 16 23 C -0.14 -1.20 8.08 -25.92 -0.21 -1.41 16 24 C -0.14 -1.61 7.81 -25.92 -0.20 -1.82 16 25 C -0.11 -1.71 6.02 -26.13 -0.16 -1.87 16 26 C -0.12 -1.60 6.94 -23.48 -0.16 -1.76 16 27 C -0.11 -1.83 6.46 -26.21 -0.17 -2.00 16 28 C 0.16 3.07 2.64 -68.72 -0.18 2.89 16 29 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.04 0.90 8.03 -51.93 -0.42 0.49 16 32 H 0.07 1.74 6.99 -51.93 -0.36 1.37 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.30 7.33 -51.93 -0.38 0.92 16 35 H 0.41 7.19 6.84 -40.82 -0.28 6.91 16 36 H 0.16 2.17 7.59 -52.49 -0.40 1.77 16 37 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.15 2.22 5.64 -51.93 -0.29 1.92 16 39 H 0.10 1.07 7.73 -51.93 -0.40 0.67 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.15 6.71 -51.93 -0.35 0.80 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 1.06 7.38 -51.93 -0.38 0.67 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -29.56 388.42 -10.26 -39.83 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.87 Total: 11.00 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.33 Total: -3.57 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.04 Total: -59.02 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.56 -10.26 -39.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990716982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.372 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds