Wall clock time and date at job start Wed Apr 1 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48497 * 109.46659 * 274.98847 * 3 2 1 5 5 H 1.48492 * 109.47379 * 34.98707 * 3 2 1 6 6 H 1.48499 * 109.47004 * 154.99342 * 3 2 1 7 7 C 1.38811 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99790 * 186.23276 * 7 2 1 9 9 N 1.36937 * 120.00001 * 6.24028 * 7 2 1 10 10 C 1.49298 * 127.10338 * 355.93972 * 9 7 2 11 11 C 1.56228 * 106.51046 * 171.30657 * 10 9 7 12 12 C 1.52137 * 100.81343 * 336.55152 * 11 10 9 13 13 N 1.46500 * 111.09297 * 286.02086 * 12 11 10 14 14 C 1.34772 * 119.99747 * 288.30462 * 13 12 11 15 15 O 1.21623 * 120.00316 * 355.32990 * 14 13 12 16 16 C 1.47168 * 119.99628 * 175.32112 * 14 13 12 17 17 C 1.38403 * 126.88550 * 5.60653 * 16 14 13 18 18 C 1.39672 * 105.35712 * 179.91336 * 17 16 14 19 19 N 1.30861 * 107.86489 * 0.35199 * 18 17 16 20 20 N 1.28443 * 110.92567 * 359.77175 * 19 18 17 21 21 C 1.46499 * 125.19024 * 180.02562 * 20 19 18 22 22 C 1.53781 * 113.61678 * 42.05384 * 21 20 19 23 23 C 1.53778 * 87.08070 * 220.01926 * 22 21 20 24 24 C 1.53778 * 87.08309 * 25.43409 * 23 22 21 25 25 C 1.51232 * 122.09495 * 151.18166 * 12 11 10 26 26 C 1.55789 * 104.61772 * 218.75177 * 25 12 11 27 27 C 1.56282 * 105.89162 * 7.24851 * 26 25 12 28 28 C 1.42695 * 127.10545 * 175.89331 * 9 7 2 29 29 H 1.08995 * 108.16003 * 104.18967 * 28 9 7 30 30 H 0.96999 * 119.99560 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.04816 * 290.57186 * 10 9 7 32 32 H 1.09005 * 110.05152 * 51.98991 * 10 9 7 33 33 H 1.09003 * 111.14873 * 94.44303 * 11 10 9 34 34 H 1.08997 * 111.14955 * 218.61955 * 11 10 9 35 35 H 0.97001 * 120.00237 * 108.31375 * 13 12 11 36 36 H 1.07994 * 127.31783 * 359.97438 * 17 16 14 37 37 H 1.08003 * 126.06641 * 180.10764 * 18 17 16 38 38 H 1.09004 * 112.85359 * 173.35999 * 21 20 19 39 39 H 1.09002 * 113.60844 * 334.56700 * 22 21 20 40 40 H 1.08996 * 113.61248 * 105.46627 * 22 21 20 41 41 H 1.08999 * 113.61395 * 270.87964 * 23 22 21 42 42 H 1.09007 * 113.60857 * 139.98267 * 23 22 21 43 43 H 1.09004 * 113.60952 * 220.02298 * 24 23 22 44 44 H 1.08997 * 113.69561 * 89.13020 * 24 23 22 45 45 H 1.08992 * 110.40737 * 337.53542 * 25 12 11 46 46 H 1.08998 * 110.40253 * 99.85533 * 25 12 11 47 47 H 1.09003 * 110.19143 * 248.14135 * 26 25 12 48 48 H 1.09003 * 110.17001 * 126.34622 * 26 25 12 49 49 H 1.09003 * 110.97266 * 266.12928 * 27 26 25 50 50 H 1.08994 * 110.97420 * 142.39911 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5045 2.6200 0.8027 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0855 -1.2049 0.1021 9 7 1.3317 -2.3846 -0.1278 10 6 -0.1482 -2.5712 -0.1933 11 6 -0.3908 -4.0696 -0.5631 12 6 0.9268 -4.4131 -1.2417 13 7 1.0047 -3.8132 -2.5760 14 6 0.2467 -4.2993 -3.5786 15 8 -0.4380 -5.2883 -3.3989 16 6 0.2473 -3.6333 -4.8910 17 6 1.0457 -2.5734 -5.2843 18 6 0.6782 -2.3034 -6.6045 19 7 -0.2678 -3.1440 -6.9377 20 7 -0.5440 -3.9337 -5.9632 21 6 -1.5534 -4.9950 -5.9966 22 6 -1.5599 -5.7980 -7.3081 23 6 -3.0949 -5.7852 -7.2164 24 6 -2.9562 -4.4989 -6.3852 25 6 1.4950 -5.8146 -1.2307 26 6 3.0298 -5.6152 -1.0527 27 6 3.2347 -4.0897 -0.7823 28 6 1.8928 -3.6928 -0.2276 29 1 1.7610 -4.1931 0.7317 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5961 -2.3480 0.7750 32 1 -0.5731 -1.9228 -0.9596 33 1 -0.5428 -4.6755 0.3302 34 1 -1.2281 -4.1738 -1.2530 35 1 1.6020 -3.0662 -2.7378 36 1 1.7944 -2.0641 -4.6958 37 1 1.0974 -1.5346 -7.2366 38 1 -1.5427 -5.6176 -5.1019 39 1 -1.1688 -5.2436 -8.1612 40 1 -1.1250 -6.7929 -7.2130 41 1 -3.5058 -6.6250 -6.6561 42 1 -3.5883 -5.6336 -8.1765 43 1 -3.6486 -4.4453 -5.5450 44 1 -2.9469 -3.5887 -6.9848 45 1 1.0863 -6.3838 -0.3959 46 1 1.2822 -6.3182 -2.1736 47 1 3.5552 -5.9095 -1.9613 48 1 3.3887 -6.1986 -0.2048 49 1 3.4480 -3.5546 -1.7076 50 1 4.0239 -3.9261 -0.0486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990716982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:56 Heat of formation + Delta-G solvation = 90.458538 kcal Electronic energy + Delta-G solvation = -32057.283159 eV Core-core repulsion = 28087.389096 eV Total energy + Delta-G solvation = -3969.894063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.59191 -41.89421 -39.45763 -39.41206 -36.15554 -34.64606 -33.66267 -32.71894 -32.16021 -31.09522 -28.53620 -27.39117 -26.76278 -26.48302 -25.94818 -24.49262 -22.89898 -22.18358 -21.55181 -21.21384 -20.30792 -20.04198 -19.16220 -18.34882 -17.42288 -17.20912 -16.96638 -16.49351 -16.42097 -16.06549 -15.85395 -15.69318 -15.55222 -14.99937 -14.93189 -14.41122 -14.20185 -14.05424 -13.81955 -13.60635 -13.52928 -13.27901 -13.07172 -12.97739 -12.84008 -12.64049 -12.22704 -12.21380 -12.10440 -12.02678 -11.91779 -11.80607 -11.64013 -11.60258 -11.54715 -11.34703 -11.07134 -10.75141 -10.64481 -10.28145 -9.97996 -9.89598 -8.86550 -7.83507 -5.17861 0.22969 1.37142 1.49813 1.50420 1.58950 1.63665 2.16031 2.30616 2.51974 3.07587 3.30880 3.36485 3.47074 3.56372 3.72405 3.75785 3.78101 3.89462 3.94798 4.09278 4.15904 4.27322 4.37806 4.42327 4.50084 4.56723 4.59786 4.63604 4.67190 4.73693 4.79510 4.83142 4.86389 4.94213 4.95031 4.97418 4.97596 5.05715 5.12599 5.23261 5.28874 5.32329 5.50213 5.54913 5.55885 5.62311 5.66690 5.76209 5.79331 6.19004 6.50702 7.04903 7.06149 7.15319 7.78510 8.50490 9.28691 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003955 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.857559 B = 7077.590095 C = 8167.621591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.058 4.058 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.089 0.911 9 N -0.596 5.596 10 C 0.188 3.812 11 C -0.127 4.127 12 C 0.140 3.860 13 N -0.670 5.670 14 C 0.592 3.408 15 O -0.567 6.567 16 C -0.060 4.060 17 C -0.189 4.189 18 C -0.007 4.007 19 N -0.289 5.289 20 N -0.249 5.249 21 C 0.092 3.908 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.107 4.107 26 C -0.103 4.103 27 C -0.111 4.111 28 C 0.148 3.852 29 H 0.021 0.979 30 H 0.244 0.756 31 H 0.001 0.999 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.405 0.595 36 H 0.169 0.831 37 H 0.216 0.784 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -12.739 -12.259 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.191 1.191 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.320 5.320 10 C 0.064 3.936 11 C -0.166 4.166 12 C 0.052 3.948 13 N -0.320 5.320 14 C 0.378 3.622 15 O -0.448 6.448 16 C -0.188 4.188 17 C -0.218 4.218 18 C -0.182 4.182 19 N -0.121 5.121 20 N -0.037 5.037 21 C -0.008 4.008 22 C -0.169 4.169 23 C -0.155 4.155 24 C -0.182 4.182 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.149 4.149 28 C 0.039 3.961 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.019 0.981 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.241 0.759 36 H 0.186 0.814 37 H 0.233 0.767 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.104 0.896 49 H 0.082 0.918 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.087 -13.603 -12.928 18.767 hybrid contribution 0.754 2.216 1.061 2.570 sum 0.667 -11.387 -11.868 16.461 Atomic orbital electron populations 1.70146 1.06428 1.25081 1.58105 1.25537 0.96219 1.00695 1.02661 0.85193 0.77943 0.79811 0.77212 1.21365 1.23091 1.19117 1.19380 0.91379 0.83170 1.42072 0.89306 1.43772 1.01797 1.01297 1.85085 1.21703 0.83546 0.91163 0.97196 1.22648 0.96877 0.97135 0.99935 1.21580 0.96777 0.94598 0.81805 1.45384 1.42563 1.35552 1.08453 1.16986 0.79629 0.83022 0.82586 1.90641 1.43933 1.26874 1.83393 1.21605 1.01559 1.03290 0.92331 1.22562 1.03415 0.98134 0.97714 1.24070 0.97085 1.01188 0.95882 1.73014 1.18174 1.05186 1.15753 1.45955 1.26823 1.24561 1.06319 1.24090 0.86196 0.87412 1.03111 1.23286 0.98357 1.00221 0.95074 1.22668 0.94776 0.96711 1.01387 1.23360 0.93864 1.00045 1.00949 1.21897 0.96091 0.93850 1.02768 1.22780 0.94424 0.94298 1.02636 1.21859 0.95797 0.96448 1.00794 1.21065 0.94283 0.85743 0.94973 0.96143 0.94660 0.98051 0.95255 0.89718 0.92445 0.75855 0.81380 0.76738 0.84307 0.89064 0.89571 0.88004 0.88564 0.90647 0.89769 0.89780 0.91503 0.90628 0.89602 0.91782 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.58 10.57 21.65 0.23 -55.35 16 2 C -0.06 -3.13 5.49 84.86 0.47 -2.66 16 3 Si 0.97 43.95 29.56 68.60 2.03 45.97 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.23 -11.95 10.28 84.03 0.86 -11.09 16 8 H 0.09 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.60 -28.24 3.12 -668.61 -2.09 -30.32 16 10 C 0.19 9.17 5.36 86.96 0.47 9.63 16 11 C -0.13 -4.95 6.21 31.43 0.20 -4.76 16 12 C 0.14 4.83 0.40 4.33 0.00 4.83 16 13 N -0.67 -23.29 4.38 -423.12 -1.85 -25.14 16 14 C 0.59 20.81 7.13 86.59 0.62 21.43 16 15 O -0.57 -21.10 12.64 -4.11 -0.05 -21.15 16 16 C -0.06 -1.97 6.96 40.79 0.28 -1.68 16 17 C -0.19 -5.56 10.50 22.66 0.24 -5.32 16 18 C -0.01 -0.19 12.03 85.18 1.02 0.83 16 19 N -0.29 -8.43 11.14 -57.14 -0.64 -9.06 16 20 N -0.25 -7.60 3.46 -311.79 -1.08 -8.68 16 21 C 0.09 2.40 4.45 45.52 0.20 2.60 16 22 C -0.13 -2.58 7.74 31.12 0.24 -2.34 16 23 C -0.12 -1.86 8.08 31.12 0.25 -1.61 16 24 C -0.14 -3.19 7.81 31.12 0.24 -2.95 16 25 C -0.11 -3.02 6.02 30.98 0.19 -2.84 16 26 C -0.10 -2.46 6.94 32.70 0.23 -2.24 16 27 C -0.11 -3.27 6.46 30.93 0.20 -3.07 16 28 C 0.15 5.55 2.64 46.47 0.12 5.68 16 29 H 0.02 0.81 7.94 -2.39 -0.02 0.79 16 30 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16 32 H 0.03 1.63 6.99 -2.38 -0.02 1.61 16 33 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.06 2.33 7.33 -2.39 -0.02 2.31 16 35 H 0.41 14.35 6.84 -92.71 -0.63 13.71 16 36 H 0.17 4.50 7.59 -2.91 -0.02 4.47 16 37 H 0.22 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.14 4.05 5.64 -2.38 -0.01 4.04 16 39 H 0.09 1.91 7.73 -2.39 -0.02 1.89 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.08 2.01 8.05 -2.39 -0.02 2.00 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.00 6.71 -2.39 -0.02 1.98 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 1.92 7.38 -2.39 -0.02 1.91 16 50 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.75 388.42 2.69 -63.05 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.32 Total: 36.24 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.83 Total: 4.45 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -5.43 Total: -128.57 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.75 2.69 -63.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990716982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.512 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds