Wall clock time and date at job start Wed Apr 1 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47313 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 120.00134 * 3 2 1 6 6 H 1.48507 * 109.46639 * 239.99692 * 3 2 1 7 7 C 1.38815 * 119.99820 * 180.27124 * 2 1 3 8 8 H 1.08002 * 119.99679 * 145.31322 * 7 2 1 9 9 N 1.36929 * 119.99822 * 325.31755 * 7 2 1 10 10 C 1.49291 * 127.11024 * 2.14920 * 9 7 2 11 11 C 1.56132 * 106.56259 * 188.53020 * 10 9 7 12 12 C 1.52135 * 100.70467 * 23.82010 * 11 10 9 13 13 N 1.46493 * 111.49847 * 73.89868 * 12 11 10 14 14 C 1.34770 * 120.00199 * 71.46937 * 13 12 11 15 15 O 1.21632 * 120.00265 * 354.68645 * 14 13 12 16 16 C 1.47167 * 120.00046 * 174.67659 * 14 13 12 17 17 C 1.38404 * 126.88438 * 5.20929 * 16 14 13 18 18 C 1.39674 * 105.35943 * 179.97438 * 17 16 14 19 19 N 1.30864 * 107.86039 * 359.97438 * 18 17 16 20 20 N 1.28445 * 110.92984 * 359.71670 * 19 18 17 21 21 C 1.46496 * 125.19395 * 180.27694 * 20 19 18 22 22 C 1.53782 * 113.61484 * 42.14174 * 21 20 19 23 23 C 1.53779 * 87.08518 * 220.01843 * 22 21 20 24 24 C 1.53782 * 113.61481 * 304.64572 * 21 20 19 25 25 C 1.51369 * 121.49631 * 208.88114 * 12 11 10 26 26 C 1.55694 * 104.22638 * 141.91512 * 25 12 11 27 27 C 1.56277 * 105.93788 * 352.16804 * 26 25 12 28 28 C 1.42711 * 127.09890 * 182.46931 * 9 7 2 29 29 H 1.08997 * 108.16400 * 256.52363 * 28 9 7 30 30 H 0.97006 * 119.99955 * 174.21036 * 1 2 3 31 31 H 1.09000 * 110.04580 * 307.92906 * 10 9 7 32 32 H 1.09001 * 110.04664 * 69.39717 * 10 9 7 33 33 H 1.09005 * 111.39051 * 265.88923 * 11 10 9 34 34 H 1.08997 * 111.05035 * 141.60519 * 11 10 9 35 35 H 0.96999 * 119.99878 * 251.47708 * 13 12 11 36 36 H 1.07991 * 127.32088 * 359.97438 * 17 16 14 37 37 H 1.07997 * 126.06887 * 180.02562 * 18 17 16 38 38 H 1.09003 * 112.85301 * 173.44822 * 21 20 19 39 39 H 1.09004 * 113.61203 * 334.56725 * 22 21 20 40 40 H 1.09000 * 113.61386 * 105.46535 * 22 21 20 41 41 H 1.08995 * 113.61701 * 270.88225 * 23 22 21 42 42 H 1.09000 * 113.61575 * 139.97778 * 23 22 21 43 43 H 1.08996 * 113.61462 * 254.52501 * 24 21 20 44 44 H 1.08995 * 113.61380 * 25.35071 * 24 21 20 45 45 H 1.08995 * 111.08820 * 23.01225 * 25 12 11 46 46 H 1.09001 * 110.19772 * 260.37357 * 25 12 11 47 47 H 1.09001 * 110.15942 * 233.05132 * 26 25 12 48 48 H 1.09000 * 110.21648 * 111.32063 * 26 25 12 49 49 H 1.09001 * 110.97123 * 217.62306 * 27 26 25 50 50 H 1.09002 * 111.00351 * 93.87273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2126 7 6 2.0103 -1.2022 -0.0057 8 1 2.9463 -1.2828 -0.5384 9 7 1.5080 -2.2858 0.6640 10 6 0.2169 -2.3650 1.4093 11 6 0.2224 -3.7311 2.1652 12 6 1.7177 -3.9937 2.2634 13 7 2.3503 -3.1282 3.2618 14 6 2.1273 -3.3384 4.5742 15 8 1.3267 -4.1832 4.9274 16 6 2.8527 -2.5460 5.5800 17 6 3.7132 -1.4885 5.3417 18 6 4.1443 -1.0709 6.6029 19 7 3.5702 -1.8352 7.4967 20 7 2.8058 -2.7020 6.9363 21 6 2.0090 -3.7076 7.6434 22 6 1.3108 -3.1667 8.9023 23 6 1.6704 -4.5000 9.5790 24 6 2.8370 -4.6009 8.5821 25 6 2.2719 -5.4015 2.3123 26 6 3.5742 -5.3297 1.4621 27 6 3.5797 -3.9122 0.8042 28 6 2.1138 -3.5709 0.7989 29 1 1.6079 -4.2579 0.1205 30 1 -0.4850 -0.8358 -0.0847 31 1 0.1452 -1.5426 2.1210 32 1 -0.6200 -2.3300 0.7117 33 1 -0.2761 -4.5082 1.5856 34 1 -0.2254 -3.6332 3.1541 35 1 2.9296 -2.4037 2.9782 36 1 3.9921 -1.0743 4.3842 37 1 4.8291 -0.2606 6.8047 38 1 1.3471 -4.2656 6.9810 39 1 1.8115 -2.3045 9.3428 40 1 0.2387 -3.0161 8.7763 41 1 0.9149 -5.2744 9.4469 42 1 1.9898 -4.3914 10.6154 43 1 2.9969 -5.6083 8.1978 44 1 3.7556 -4.1314 8.9340 45 1 1.5719 -6.1139 1.8759 46 1 2.5040 -5.6790 3.3405 47 1 3.5632 -6.1012 0.6922 48 1 4.4486 -5.4504 2.1016 49 1 3.9740 -3.9549 -0.2111 50 1 4.1432 -3.2025 1.4099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990716984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:00 Heat of formation + Delta-G solvation = 107.995341 kcal Electronic energy + Delta-G solvation = -32061.363817 eV Core-core repulsion = 28092.230207 eV Total energy + Delta-G solvation = -3969.133610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52880 -40.58330 -38.61507 -38.10742 -34.79277 -33.36801 -32.03101 -31.68623 -30.75825 -29.70939 -26.91037 -26.11667 -25.95802 -25.56438 -23.99460 -23.30210 -21.87834 -20.72090 -20.47804 -19.77318 -19.22324 -18.83077 -18.04932 -17.23439 -16.19856 -15.88462 -15.79831 -15.64361 -14.89599 -14.66573 -14.53253 -14.37028 -14.01623 -13.68262 -13.55431 -13.42448 -12.95023 -12.84488 -12.77070 -12.67717 -12.43643 -12.08908 -11.91132 -11.52847 -11.44318 -11.05416 -10.95422 -10.84513 -10.83932 -10.72998 -10.61866 -10.53454 -10.37734 -10.18162 -10.05437 -9.85267 -9.63331 -9.39327 -9.12796 -8.93298 -8.65766 -8.39613 -7.06092 -6.21207 -3.11008 1.37926 2.42505 2.68248 3.41645 3.44792 3.47527 3.52157 3.69474 4.14936 4.29079 4.37370 4.53849 4.57963 4.63118 4.75240 4.86182 5.04694 5.09159 5.17930 5.27370 5.37215 5.46868 5.47303 5.48926 5.56704 5.59683 5.61080 5.65341 5.67481 5.72816 5.75541 5.83973 5.86697 5.92977 6.05881 6.12763 6.16444 6.20524 6.25657 6.34627 6.46374 6.57246 6.58698 6.73308 6.82527 6.90368 6.97640 7.06656 7.72124 7.79151 8.14768 8.38394 8.41723 8.92695 9.75652 10.35359 11.13358 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.003941 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.408601 B = 7102.612169 C = 8160.639313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.013 4.013 3 Si 1.047 2.953 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.353 4.353 8 H 0.075 0.925 9 N -0.585 5.585 10 C 0.145 3.855 11 C -0.129 4.129 12 C 0.132 3.868 13 N -0.671 5.671 14 C 0.591 3.409 15 O -0.552 6.552 16 C -0.034 4.034 17 C -0.187 4.187 18 C -0.006 4.006 19 N -0.281 5.281 20 N -0.247 5.247 21 C 0.111 3.889 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.113 4.113 28 C 0.165 3.835 29 H 0.022 0.978 30 H 0.271 0.729 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.409 0.591 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.155 0.845 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 -9.733 13.712 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.216 4.216 3 Si 0.876 3.124 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.479 4.479 8 H 0.092 0.908 9 N -0.310 5.310 10 C 0.021 3.979 11 C -0.168 4.168 12 C 0.044 3.956 13 N -0.322 5.322 14 C 0.376 3.624 15 O -0.431 6.431 16 C -0.162 4.162 17 C -0.216 4.216 18 C -0.182 4.182 19 N -0.114 5.114 20 N -0.034 5.034 21 C 0.010 3.990 22 C -0.179 4.179 23 C -0.174 4.174 24 C -0.180 4.180 25 C -0.149 4.149 26 C -0.156 4.156 27 C -0.152 4.152 28 C 0.055 3.945 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.178 0.822 37 H 0.201 0.799 38 H 0.172 0.828 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.686 -8.855 15.113 18.416 hybrid contribution 0.576 -0.936 -1.254 1.667 sum 6.262 -9.791 13.859 18.087 Atomic orbital electron populations 1.70825 1.07097 1.30434 1.46179 1.25586 0.96095 1.00497 0.99377 0.83794 0.75406 0.76946 0.76253 1.21222 1.22037 1.22057 1.19633 1.06407 0.89102 1.32789 0.90756 1.43699 1.18423 1.08888 1.59947 1.22146 0.88609 0.93577 0.93593 1.22594 0.94451 0.98762 1.00944 1.21564 0.93351 0.89572 0.91097 1.45392 1.49161 1.33978 1.03621 1.16875 0.81285 0.82053 0.82156 1.90668 1.35965 1.35868 1.80640 1.21550 1.05846 1.02849 0.85950 1.22360 1.01012 0.98084 1.00186 1.23521 1.03620 1.01682 0.89351 1.73027 1.07611 1.03004 1.27711 1.45723 1.30965 1.23781 1.02920 1.23855 0.93585 0.88105 0.93437 1.23331 1.01268 0.98767 0.94507 1.22681 0.98173 0.97483 0.99040 1.23349 0.98604 0.99993 0.96030 1.21895 0.97161 0.95485 1.00406 1.22830 0.97312 0.96982 0.98446 1.21829 0.97059 0.95765 1.00551 1.20746 0.93394 0.89122 0.91260 0.96091 0.91705 0.93852 0.94503 0.90954 0.90827 0.75435 0.82156 0.79853 0.82805 0.88470 0.90424 0.89445 0.90328 0.90479 0.88897 0.90760 0.91413 0.91812 0.92106 0.91643 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.49 12.95 55.49 0.72 -25.77 16 2 C -0.01 -0.34 5.21 -17.43 -0.09 -0.44 16 3 Si 1.05 24.30 30.03 -169.99 -5.11 19.20 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.35 -9.28 10.02 -15.06 -0.15 -9.43 16 8 H 0.07 1.95 8.02 -52.49 -0.42 1.53 16 9 N -0.59 -13.69 3.13 -162.75 -0.51 -14.20 16 10 C 0.15 3.29 5.23 -0.81 0.00 3.29 16 11 C -0.13 -2.40 6.19 -25.49 -0.16 -2.56 16 12 C 0.13 2.28 0.38 -130.64 -0.05 2.23 16 13 N -0.67 -11.44 4.39 -47.65 -0.21 -11.64 16 14 C 0.59 10.07 7.12 -12.64 -0.09 9.98 16 15 O -0.55 -10.02 12.65 5.25 0.07 -9.95 16 16 C -0.03 -0.53 6.96 -82.06 -0.57 -1.10 16 17 C -0.19 -2.69 10.50 -38.98 -0.41 -3.10 16 18 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 19 N -0.28 -4.04 11.14 30.59 0.34 -3.70 16 20 N -0.25 -3.63 3.46 -49.91 -0.17 -3.81 16 21 C 0.11 1.40 4.45 -67.12 -0.30 1.10 16 22 C -0.14 -1.48 7.74 -25.92 -0.20 -1.68 16 23 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 24 C -0.14 -1.44 7.81 -25.91 -0.20 -1.64 16 25 C -0.11 -1.64 6.08 -26.12 -0.16 -1.80 16 26 C -0.12 -1.58 6.93 -23.54 -0.16 -1.74 16 27 C -0.11 -1.83 6.45 -26.22 -0.17 -1.99 16 28 C 0.17 3.17 2.65 -68.72 -0.18 2.99 16 29 H 0.02 0.44 7.96 -51.93 -0.41 0.02 16 30 H 0.27 7.92 5.73 -40.82 -0.23 7.69 16 31 H 0.04 1.09 8.05 -51.93 -0.42 0.68 16 32 H 0.04 0.90 6.50 -51.93 -0.34 0.56 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.41 7.02 -51.93 -0.36 1.05 16 35 H 0.41 7.08 6.77 -40.82 -0.28 6.81 16 36 H 0.16 2.11 7.58 -52.49 -0.40 1.71 16 37 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.15 2.15 5.64 -51.93 -0.29 1.85 16 39 H 0.10 1.09 7.73 -51.93 -0.40 0.69 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.04 7.02 -51.93 -0.36 0.67 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.07 1.09 7.28 -51.93 -0.38 0.71 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -30.57 387.58 -10.09 -40.65 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -7.74 Total: 10.92 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.32 Total: -7.54 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.17 Total: -59.12 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.11 Total: 19.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.57 -10.09 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990716984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.650 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds