Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47313 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 120.00134 * 3 2 1 6 6 H 1.48507 * 109.46639 * 239.99692 * 3 2 1 7 7 C 1.38815 * 119.99820 * 180.27124 * 2 1 3 8 8 H 1.08002 * 119.99679 * 145.31322 * 7 2 1 9 9 N 1.36929 * 119.99822 * 325.31755 * 7 2 1 10 10 C 1.49291 * 127.11024 * 2.14920 * 9 7 2 11 11 C 1.56132 * 106.56259 * 188.53020 * 10 9 7 12 12 C 1.52135 * 100.70467 * 23.82010 * 11 10 9 13 13 N 1.46493 * 111.49847 * 73.89868 * 12 11 10 14 14 C 1.34770 * 120.00199 * 71.46937 * 13 12 11 15 15 O 1.21632 * 120.00265 * 354.68645 * 14 13 12 16 16 C 1.47167 * 120.00046 * 174.67659 * 14 13 12 17 17 C 1.38404 * 126.88438 * 5.20929 * 16 14 13 18 18 C 1.39674 * 105.35943 * 179.97438 * 17 16 14 19 19 N 1.30864 * 107.86039 * 359.97438 * 18 17 16 20 20 N 1.28445 * 110.92984 * 359.71670 * 19 18 17 21 21 C 1.46496 * 125.19395 * 180.27694 * 20 19 18 22 22 C 1.53782 * 113.61484 * 42.14174 * 21 20 19 23 23 C 1.53779 * 87.08518 * 220.01843 * 22 21 20 24 24 C 1.53782 * 113.61481 * 304.64572 * 21 20 19 25 25 C 1.51369 * 121.49631 * 208.88114 * 12 11 10 26 26 C 1.55694 * 104.22638 * 141.91512 * 25 12 11 27 27 C 1.56277 * 105.93788 * 352.16804 * 26 25 12 28 28 C 1.42711 * 127.09890 * 182.46931 * 9 7 2 29 29 H 1.08997 * 108.16400 * 256.52363 * 28 9 7 30 30 H 0.97006 * 119.99955 * 174.21036 * 1 2 3 31 31 H 1.09000 * 110.04580 * 307.92906 * 10 9 7 32 32 H 1.09001 * 110.04664 * 69.39717 * 10 9 7 33 33 H 1.09005 * 111.39051 * 265.88923 * 11 10 9 34 34 H 1.08997 * 111.05035 * 141.60519 * 11 10 9 35 35 H 0.96999 * 119.99878 * 251.47708 * 13 12 11 36 36 H 1.07991 * 127.32088 * 359.97438 * 17 16 14 37 37 H 1.07997 * 126.06887 * 180.02562 * 18 17 16 38 38 H 1.09003 * 112.85301 * 173.44822 * 21 20 19 39 39 H 1.09004 * 113.61203 * 334.56725 * 22 21 20 40 40 H 1.09000 * 113.61386 * 105.46535 * 22 21 20 41 41 H 1.08995 * 113.61701 * 270.88225 * 23 22 21 42 42 H 1.09000 * 113.61575 * 139.97778 * 23 22 21 43 43 H 1.08996 * 113.61462 * 254.52501 * 24 21 20 44 44 H 1.08995 * 113.61380 * 25.35071 * 24 21 20 45 45 H 1.08995 * 111.08820 * 23.01225 * 25 12 11 46 46 H 1.09001 * 110.19772 * 260.37357 * 25 12 11 47 47 H 1.09001 * 110.15942 * 233.05132 * 26 25 12 48 48 H 1.09000 * 110.21648 * 111.32063 * 26 25 12 49 49 H 1.09001 * 110.97123 * 217.62306 * 27 26 25 50 50 H 1.09002 * 111.00351 * 93.87273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2126 7 6 2.0103 -1.2022 -0.0057 8 1 2.9463 -1.2828 -0.5384 9 7 1.5080 -2.2858 0.6640 10 6 0.2169 -2.3650 1.4093 11 6 0.2224 -3.7311 2.1652 12 6 1.7177 -3.9937 2.2634 13 7 2.3503 -3.1282 3.2618 14 6 2.1273 -3.3384 4.5742 15 8 1.3267 -4.1832 4.9274 16 6 2.8527 -2.5460 5.5800 17 6 3.7132 -1.4885 5.3417 18 6 4.1443 -1.0709 6.6029 19 7 3.5702 -1.8352 7.4967 20 7 2.8058 -2.7020 6.9363 21 6 2.0090 -3.7076 7.6434 22 6 1.3108 -3.1667 8.9023 23 6 1.6704 -4.5000 9.5790 24 6 2.8370 -4.6009 8.5821 25 6 2.2719 -5.4015 2.3123 26 6 3.5742 -5.3297 1.4621 27 6 3.5797 -3.9122 0.8042 28 6 2.1138 -3.5709 0.7989 29 1 1.6079 -4.2579 0.1205 30 1 -0.4850 -0.8358 -0.0847 31 1 0.1452 -1.5426 2.1210 32 1 -0.6200 -2.3300 0.7117 33 1 -0.2761 -4.5082 1.5856 34 1 -0.2254 -3.6332 3.1541 35 1 2.9296 -2.4037 2.9782 36 1 3.9921 -1.0743 4.3842 37 1 4.8291 -0.2606 6.8047 38 1 1.3471 -4.2656 6.9810 39 1 1.8115 -2.3045 9.3428 40 1 0.2387 -3.0161 8.7763 41 1 0.9149 -5.2744 9.4469 42 1 1.9898 -4.3914 10.6154 43 1 2.9969 -5.6083 8.1978 44 1 3.7556 -4.1314 8.9340 45 1 1.5719 -6.1139 1.8759 46 1 2.5040 -5.6790 3.3405 47 1 3.5632 -6.1012 0.6922 48 1 4.4486 -5.4504 2.1016 49 1 3.9740 -3.9549 -0.2111 50 1 4.1432 -3.2025 1.4099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990716984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = 90.967507 kcal Electronic energy + Delta-G solvation = -32062.102199 eV Core-core repulsion = 28092.230207 eV Total energy + Delta-G solvation = -3969.871992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.62032 -42.02551 -39.52067 -39.45944 -36.49405 -34.69737 -33.78033 -32.74028 -32.18905 -31.16386 -28.45478 -27.56624 -26.77199 -26.50366 -25.86716 -24.56325 -22.93268 -22.23381 -21.62689 -21.33150 -20.36826 -20.10716 -19.23743 -19.03534 -17.44170 -17.21058 -17.01028 -16.50103 -16.28447 -16.15513 -15.96469 -15.71592 -15.49916 -15.07759 -14.96689 -14.68842 -14.45112 -14.19842 -13.82350 -13.61320 -13.60034 -13.50163 -13.29134 -12.96792 -12.52640 -12.48203 -12.28665 -12.23119 -12.17733 -11.99840 -11.94230 -11.88033 -11.65523 -11.62242 -11.58159 -11.42051 -11.19531 -10.82382 -10.39868 -10.32893 -10.01480 -9.96414 -9.02791 -8.35594 -5.19704 0.18673 1.34482 1.59946 1.61373 1.66694 1.84790 2.14001 2.19138 2.64648 2.94891 3.14157 3.29321 3.45695 3.50028 3.66398 3.70731 3.75212 3.76900 3.93490 3.97924 4.11023 4.13243 4.24222 4.29479 4.40043 4.48547 4.51390 4.59450 4.66260 4.68278 4.72647 4.80827 4.81952 4.85349 4.87505 4.90180 4.93788 4.97010 5.01546 5.03150 5.14655 5.15499 5.30824 5.33010 5.44137 5.54147 5.62684 5.75621 5.77103 6.28926 6.43432 6.86731 7.01643 7.10221 7.72903 8.39336 9.00786 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.003941 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.408601 B = 7102.612169 C = 8160.639313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.069 4.069 3 Si 1.098 2.902 4 H -0.302 1.302 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.346 4.346 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.155 3.845 11 C -0.118 4.118 12 C 0.142 3.858 13 N -0.673 5.673 14 C 0.592 3.408 15 O -0.567 6.567 16 C -0.061 4.061 17 C -0.189 4.189 18 C -0.005 4.005 19 N -0.287 5.287 20 N -0.248 5.248 21 C 0.091 3.909 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.134 4.134 25 C -0.106 4.106 26 C -0.103 4.103 27 C -0.110 4.110 28 C 0.151 3.849 29 H 0.017 0.983 30 H 0.257 0.743 31 H 0.008 0.992 32 H 0.011 0.989 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.406 0.594 36 H 0.169 0.831 37 H 0.217 0.783 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 -10.922 14.974 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.266 4.266 3 Si 0.923 3.077 4 H -0.228 1.228 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.030 3.970 11 C -0.157 4.157 12 C 0.055 3.945 13 N -0.323 5.323 14 C 0.378 3.622 15 O -0.447 6.447 16 C -0.189 4.189 17 C -0.218 4.218 18 C -0.180 4.180 19 N -0.120 5.120 20 N -0.036 5.036 21 C -0.009 4.009 22 C -0.177 4.177 23 C -0.156 4.156 24 C -0.173 4.173 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.149 4.149 28 C 0.042 3.958 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.187 0.813 37 H 0.234 0.766 38 H 0.155 0.845 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.955 -10.091 16.385 20.822 hybrid contribution -0.147 -0.587 -1.670 1.776 sum 7.808 -10.678 14.714 19.786 Atomic orbital electron populations 1.70936 1.08216 1.29614 1.49827 1.26815 0.96121 1.03891 0.99755 0.83100 0.74270 0.72717 0.77581 1.22843 1.20136 1.20089 1.19881 1.05680 0.89949 1.31783 0.90627 1.43818 1.19063 1.09959 1.59500 1.21928 0.87892 0.94683 0.92507 1.22497 0.96271 0.96794 1.00090 1.21534 0.91935 0.91205 0.89852 1.45386 1.49135 1.33997 1.03740 1.17019 0.81046 0.81907 0.82212 1.90654 1.36626 1.36604 1.80861 1.21543 1.07034 1.03854 0.86458 1.22586 1.00514 0.97581 1.01150 1.24090 1.03487 1.01949 0.88508 1.73032 1.07721 1.03157 1.28064 1.45964 1.30990 1.24036 1.02582 1.24093 0.94402 0.88655 0.93736 1.23330 1.00986 0.99754 0.93666 1.22669 0.97369 0.96211 0.99387 1.23315 0.98711 0.99552 0.95693 1.21903 0.98079 0.93614 1.00834 1.22765 0.97037 0.95571 0.98772 1.21852 0.94422 0.97437 1.01147 1.20984 0.95663 0.86773 0.92380 0.96551 0.93228 0.97397 0.97102 0.89182 0.91458 0.75684 0.81350 0.76603 0.84450 0.89143 0.90373 0.88121 0.88525 0.89879 0.89391 0.89370 0.91594 0.89631 0.90411 0.91317 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 12.95 21.65 0.28 -57.12 16 2 C -0.07 -3.84 5.21 84.86 0.44 -3.40 16 3 Si 1.10 49.56 30.03 68.60 2.06 51.62 16 4 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 5 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.35 -18.36 10.02 84.04 0.84 -17.52 16 8 H 0.08 3.94 8.02 -2.91 -0.02 3.91 16 9 N -0.60 -28.53 3.13 -668.81 -2.10 -30.63 16 10 C 0.15 7.35 5.23 86.92 0.45 7.80 16 11 C -0.12 -4.45 6.19 31.40 0.19 -4.26 16 12 C 0.14 4.81 0.38 4.37 0.00 4.81 16 13 N -0.67 -22.75 4.39 -422.93 -1.86 -24.60 16 14 C 0.59 20.13 7.12 86.59 0.62 20.75 16 15 O -0.57 -20.61 12.65 -4.13 -0.05 -20.66 16 16 C -0.06 -1.91 6.96 40.79 0.28 -1.62 16 17 C -0.19 -5.26 10.50 22.66 0.24 -5.02 16 18 C -0.01 -0.13 12.03 85.18 1.02 0.89 16 19 N -0.29 -7.91 11.14 -57.14 -0.64 -8.55 16 20 N -0.25 -7.18 3.46 -311.80 -1.08 -8.26 16 21 C 0.09 2.25 4.45 45.52 0.20 2.46 16 22 C -0.14 -2.79 7.74 31.12 0.24 -2.55 16 23 C -0.12 -1.72 8.08 31.12 0.25 -1.47 16 24 C -0.13 -2.53 7.81 31.12 0.24 -2.29 16 25 C -0.11 -2.88 6.08 30.99 0.19 -2.69 16 26 C -0.10 -2.44 6.93 32.66 0.23 -2.22 16 27 C -0.11 -3.32 6.45 30.93 0.20 -3.12 16 28 C 0.15 5.70 2.65 46.47 0.12 5.82 16 29 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 30 H 0.26 15.86 5.73 -92.70 -0.53 15.33 16 31 H 0.01 0.42 8.05 -2.39 -0.02 0.40 16 32 H 0.01 0.57 6.50 -2.39 -0.02 0.56 16 33 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 34 H 0.07 2.63 7.02 -2.39 -0.02 2.62 16 35 H 0.41 14.03 6.77 -92.71 -0.63 13.40 16 36 H 0.17 4.27 7.58 -2.92 -0.02 4.25 16 37 H 0.22 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.14 3.86 5.64 -2.39 -0.01 3.85 16 39 H 0.09 1.94 7.73 -2.39 -0.02 1.92 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.07 1.87 7.02 -2.39 -0.02 1.85 16 47 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.06 2.00 7.28 -2.39 -0.02 1.98 16 Total: -1.00 -68.15 387.58 2.96 -65.20 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.56 Total: 36.63 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.77 Total: -3.63 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -5.39 Total: -129.15 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.06 Total: 51.62 kcal Total: -68.15 2.96 -65.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990716984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.164 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds