Wall clock time and date at job start Wed Apr 1 2020 02:54:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31609 * 1
3 3 Si 1.86802 * 120.00154 * 2 1
4 4 H 1.48507 * 109.46891 * 269.99881 * 3 2 1
5 5 H 1.48496 * 109.47387 * 29.99674 * 3 2 1
6 6 H 1.48496 * 109.47286 * 150.00083 * 3 2 1
7 7 C 1.38813 * 120.00286 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00845 * 179.97438 * 7 2 1
9 9 N 1.36944 * 119.99486 * 0.02562 * 7 2 1
10 10 C 1.47365 * 125.58084 * 359.97005 * 9 7 2
11 11 C 1.54866 * 104.81932 * 155.30724 * 10 9 7
12 12 C 1.54916 * 101.76540 * 37.07487 * 11 10 9
13 13 N 1.46497 * 112.33154 * 86.21984 * 12 11 10
14 14 C 1.34774 * 120.00821 * 61.01061 * 13 12 11
15 15 O 1.21634 * 119.99498 * 5.16864 * 14 13 12
16 16 C 1.47161 * 120.00396 * 185.17791 * 14 13 12
17 17 C 1.38404 * 126.88461 * 354.72058 * 16 14 13
18 18 C 1.39670 * 105.35628 * 180.02562 * 17 16 14
19 19 N 1.30857 * 107.86521 * 0.02562 * 18 17 16
20 20 N 1.28447 * 110.93105 * 359.97438 * 19 18 17
21 21 C 1.46493 * 125.19500 * 179.97438 * 20 19 18
22 22 C 1.53777 * 113.61340 * 42.30797 * 21 20 19
23 23 C 1.53782 * 87.08375 * 220.01886 * 22 21 20
24 24 C 1.53775 * 87.07859 * 25.43701 * 23 22 21
25 25 C 1.53590 * 109.08974 * 211.32850 * 12 11 10
26 26 C 1.55461 * 106.05417 * 112.99959 * 25 12 11
27 27 C 1.54757 * 104.36540 * 335.35966 * 26 25 12
28 28 C 1.46985 * 125.57702 * 179.97438 * 9 7 2
29 29 H 1.09001 * 111.81285 * 59.07273 * 28 9 7
30 30 H 0.96999 * 120.00052 * 0.02562 * 1 2 3
31 31 H 1.08994 * 110.36796 * 36.47321 * 10 9 7
32 32 H 1.08995 * 110.36887 * 274.14309 * 10 9 7
33 33 H 1.08998 * 110.97159 * 278.95459 * 11 10 9
34 34 H 1.08995 * 110.96846 * 155.19402 * 11 10 9
35 35 H 0.97008 * 119.99607 * 241.01169 * 13 12 11
36 36 H 1.07992 * 127.31795 * 0.03262 * 17 16 14
37 37 H 1.08003 * 126.06823 * 179.97438 * 18 17 16
38 38 H 1.08992 * 112.85434 * 173.61606 * 21 20 19
39 39 H 1.08997 * 113.62031 * 334.56858 * 22 21 20
40 40 H 1.09005 * 113.61713 * 105.47255 * 22 21 20
41 41 H 1.08993 * 113.61597 * 270.88482 * 23 22 21
42 42 H 1.09006 * 113.61268 * 139.98335 * 23 22 21
43 43 H 1.08997 * 113.61526 * 220.01973 * 24 23 22
44 44 H 1.08997 * 113.69937 * 89.12728 * 24 23 22
45 45 H 1.09001 * 110.01220 * 232.96997 * 25 12 11
46 46 H 1.08994 * 110.01769 * 354.36430 * 25 12 11
47 47 H 1.08997 * 110.50578 * 216.56415 * 26 25 12
48 48 H 1.09006 * 110.39925 * 94.09549 * 26 25 12
49 49 H 1.09000 * 110.66556 * 279.24734 * 27 26 25
50 50 H 1.09003 * 110.67244 * 156.11196 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0464 -1.4002
5 1 1.4477 2.6527 0.6999
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3254 -2.3881 0.0005
10 6 -0.1412 -2.5313 0.0006
11 6 -0.4033 -3.9236 -0.6248
12 6 0.7720 -4.7539 -0.0511
13 7 0.4651 -5.3168 1.2661
14 6 -0.5636 -6.1759 1.4089
15 8 -1.1779 -6.5569 0.4307
16 6 -0.9436 -6.6527 2.7482
17 6 -0.2868 -6.3953 3.9390
18 6 -1.0254 -7.0606 4.9201
19 7 -2.0312 -7.6554 4.3311
20 7 -2.0148 -7.4389 3.0651
21 6 -2.9947 -7.9568 2.1072
22 6 -4.4469 -7.8745 2.6063
23 6 -4.6602 -9.2596 1.9731
24 6 -3.1496 -9.4863 2.1505
25 6 1.1665 -5.8354 -1.0679
26 6 2.5894 -5.4576 -1.5671
27 6 2.6840 -3.9301 -1.3374
28 6 1.9331 -3.7264 0.0005
29 1 2.5741 -3.8802 0.8686
30 1 -0.4850 0.8400 -0.0004
31 1 -0.5987 -1.7504 -0.6067
32 1 -0.5259 -2.4948 1.0198
33 1 -0.3542 -3.8780 -1.7128
34 1 -1.3617 -4.3250 -0.2956
35 1 1.0022 -5.0712 2.0356
36 1 0.6067 -5.8053 4.0795
37 1 -0.8050 -7.0812 5.9772
38 1 -2.8541 -7.5605 1.1017
39 1 -4.5360 -7.8726 3.6926
40 1 -5.0276 -7.0834 2.1317
41 1 -4.9763 -9.2192 0.9308
42 1 -5.2757 -9.9259 2.5777
43 1 -2.6827 -9.9963 1.3080
44 1 -2.8824 -9.9252 3.1118
45 1 1.1700 -6.8144 -0.5887
46 1 0.4691 -5.8320 -1.9056
47 1 2.6972 -5.6917 -2.6262
48 1 3.3479 -5.9790 -0.9830
49 1 2.1884 -3.3886 -2.1431
50 1 3.7245 -3.6184 -1.2460
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000990716987.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:04
Heat of formation + Delta-G solvation = 94.933273 kcal
Electronic energy + Delta-G solvation = -31512.745864 eV
Core-core repulsion = 27543.045840 eV
Total energy + Delta-G solvation = -3969.700024 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.60409 -40.10763 -38.64223 -38.00385 -34.29813 -33.61123 -31.81101 -31.57171
-30.85193 -29.56290 -26.73377 -26.20904 -25.97147 -25.57078 -23.87194 -23.22994
-21.93738 -20.88659 -20.02186 -19.88848 -19.25046 -18.73717 -17.88524 -17.03781
-16.21181 -15.94625 -15.73170 -15.65232 -14.96514 -14.81185 -14.49014 -14.11682
-13.96852 -13.56246 -13.44346 -13.32256 -12.90511 -12.81675 -12.78668 -12.46742
-12.21684 -11.87070 -11.73421 -11.46455 -11.20914 -11.06721 -10.96155 -10.86831
-10.85708 -10.73772 -10.64402 -10.56345 -10.18725 -10.10068 -9.99690 -9.81960
-9.66891 -9.49726 -9.19177 -9.01454 -8.68003 -8.60829 -6.88170 -5.66652
-3.10073 1.29832 2.35105 2.60025 3.28047 3.37940 3.39613 3.43572
3.45225 4.12501 4.27220 4.45225 4.52127 4.58327 4.62695 4.78307
4.90744 5.09793 5.11567 5.28952 5.35023 5.42728 5.47259 5.49852
5.56221 5.61245 5.62271 5.65230 5.68452 5.75008 5.77146 5.81816
5.95595 6.03197 6.08947 6.12323 6.20960 6.32556 6.38610 6.48701
6.49950 6.55702 6.71550 6.74928 6.75546 6.93293 7.06824 7.51425
7.61968 7.65700 7.85022 8.06943 8.31281 8.34392 9.19130 9.80168
10.43814 11.35904
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014736 B = 0.003070 C = 0.002892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1899.668266 B = 9117.243191 C = 9677.901765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.010 4.010
3 Si 0.913 3.087
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.221 4.221
8 H 0.077 0.923
9 N -0.595 5.595
10 C 0.152 3.848
11 C -0.142 4.142
12 C 0.161 3.839
13 N -0.686 5.686
14 C 0.592 3.408
15 O -0.541 6.541
16 C -0.032 4.032
17 C -0.191 4.191
18 C -0.006 4.006
19 N -0.280 5.280
20 N -0.245 5.245
21 C 0.111 3.889
22 C -0.141 4.141
23 C -0.136 4.136
24 C -0.140 4.140
25 C -0.110 4.110
26 C -0.125 4.125
27 C -0.128 4.128
28 C 0.163 3.837
29 H 0.048 0.952
30 H 0.252 0.748
31 H 0.108 0.892
32 H 0.009 0.991
33 H 0.070 0.930
34 H 0.064 0.936
35 H 0.402 0.598
36 H 0.159 0.841
37 H 0.184 0.816
38 H 0.154 0.846
39 H 0.097 0.903
40 H 0.078 0.922
41 H 0.088 0.912
42 H 0.078 0.922
43 H 0.077 0.923
44 H 0.092 0.908
45 H 0.060 0.940
46 H 0.070 0.930
47 H 0.059 0.941
48 H 0.058 0.942
49 H 0.075 0.925
50 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.260 -17.601 4.541 18.467
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.205 4.205
3 Si 0.744 3.256
4 H -0.216 1.216
5 H -0.217 1.217
6 H -0.208 1.208
7 C -0.349 4.349
8 H 0.095 0.905
9 N -0.320 5.320
10 C 0.028 3.972
11 C -0.181 4.181
12 C 0.075 3.925
13 N -0.336 5.336
14 C 0.377 3.623
15 O -0.419 6.419
16 C -0.161 4.161
17 C -0.220 4.220
18 C -0.182 4.182
19 N -0.112 5.112
20 N -0.032 5.032
21 C 0.010 3.990
22 C -0.180 4.180
23 C -0.174 4.174
24 C -0.179 4.179
25 C -0.149 4.149
26 C -0.163 4.163
27 C -0.168 4.168
28 C 0.055 3.945
29 H 0.065 0.935
30 H 0.063 0.937
31 H 0.126 0.874
32 H 0.027 0.973
33 H 0.088 0.912
34 H 0.083 0.917
35 H 0.237 0.763
36 H 0.177 0.823
37 H 0.201 0.799
38 H 0.172 0.828
39 H 0.115 0.885
40 H 0.097 0.903
41 H 0.106 0.894
42 H 0.097 0.903
43 H 0.096 0.904
44 H 0.111 0.889
45 H 0.079 0.921
46 H 0.089 0.911
47 H 0.078 0.922
48 H 0.077 0.923
49 H 0.094 0.906
50 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -4.793 -18.302 3.958 19.329
hybrid contribution 1.497 1.564 0.489 2.219
sum -3.296 -16.738 4.447 17.630
Atomic orbital electron populations
1.69793 1.04884 1.24737 1.57395 1.24778 0.95668 0.97682 1.02390
0.86100 0.78511 0.83469 0.77559 1.21624 1.21736 1.20768 1.19027
0.90443 0.82252 1.43182 0.90473 1.44524 1.01751 0.99162 1.86514
1.21975 0.84424 0.92880 0.97967 1.23344 0.96483 0.98128 1.00162
1.21742 0.97177 0.92468 0.81090 1.45605 1.31440 1.44669 1.11837
1.16845 0.80586 0.78965 0.85902 1.90707 1.53588 1.58042 1.39593
1.21566 0.94636 1.03751 0.96145 1.22282 1.03210 1.05682 0.90873
1.23517 0.93735 1.00389 1.00551 1.73041 1.23668 1.22881 0.91635
1.45762 1.18968 1.33763 1.04726 1.23865 0.86324 0.95829 0.92952
1.23345 0.93804 0.98310 1.02501 1.22684 0.96020 0.96969 1.01724
1.23337 0.96905 0.94125 1.03500 1.22494 0.96731 0.97524 0.98171
1.22578 0.96263 0.97260 1.00197 1.22918 1.00435 0.93934 0.99531
1.21786 0.91495 0.85791 0.95472 0.93492 0.93744 0.87397 0.97278
0.91163 0.91687 0.76254 0.82312 0.79867 0.82823 0.88469 0.90330
0.89375 0.90307 0.90379 0.88919 0.92078 0.91109 0.92221 0.92338
0.90637 0.92222
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.26 10.07 55.49 0.56 -25.70 16
2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16
3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16
4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
7 C -0.22 -5.83 10.01 -15.06 -0.15 -5.98 16
8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16
9 N -0.60 -14.27 3.03 -161.14 -0.49 -14.76 16
10 C 0.15 3.64 5.91 -2.59 -0.02 3.63 16
11 C -0.14 -2.82 5.73 -24.74 -0.14 -2.96 16
12 C 0.16 2.80 0.74 -129.38 -0.10 2.70 16
13 N -0.69 -10.75 5.21 -46.50 -0.24 -11.00 16
14 C 0.59 9.45 6.95 -12.64 -0.09 9.37 16
15 O -0.54 -9.49 12.34 5.25 0.06 -9.43 16
16 C -0.03 -0.47 6.96 -82.06 -0.57 -1.04 16
17 C -0.19 -2.38 10.50 -38.99 -0.41 -2.79 16
18 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16
19 N -0.28 -3.76 11.14 30.59 0.34 -3.41 16
20 N -0.24 -3.41 3.46 -49.91 -0.17 -3.58 16
21 C 0.11 1.35 4.42 -67.12 -0.30 1.05 16
22 C -0.14 -1.43 7.74 -25.92 -0.20 -1.63 16
23 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16
24 C -0.14 -1.38 7.80 -25.92 -0.20 -1.58 16
25 C -0.11 -1.73 5.34 -25.12 -0.13 -1.86 16
26 C -0.12 -1.80 6.87 -24.50 -0.17 -1.96 16
27 C -0.13 -2.23 6.22 -24.87 -0.15 -2.39 16
28 C 0.16 3.13 3.67 -65.61 -0.24 2.89 16
29 H 0.05 0.89 7.96 -51.93 -0.41 0.47 16
30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
31 H 0.11 2.94 5.82 -51.93 -0.30 2.64 16
32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
33 H 0.07 1.39 7.63 -51.93 -0.40 0.99 16
34 H 0.06 1.31 6.70 -51.93 -0.35 0.96 16
35 H 0.40 5.65 7.51 -40.82 -0.31 5.34 16
36 H 0.16 1.60 7.58 -52.49 -0.40 1.20 16
37 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16
38 H 0.15 2.08 5.69 -51.93 -0.30 1.79 16
39 H 0.10 1.04 7.74 -51.93 -0.40 0.64 16
40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16
42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16
43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16
44 H 0.09 0.95 8.05 -51.93 -0.42 0.54 16
45 H 0.06 0.94 7.48 -51.93 -0.39 0.56 16
46 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16
47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
49 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16
50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
LS Contribution 387.55 15.07 5.84 5.84
Total: -1.00 -30.42 387.55 -10.33 -40.75
By element:
Atomic # 1 Polarization: 17.07 SS G_CDS: -7.82 Total: 9.25 kcal
Atomic # 6 Polarization: -1.14 SS G_CDS: -3.38 Total: -4.52 kcal
Atomic # 7 Polarization: -58.45 SS G_CDS: 0.00 Total: -58.45 kcal
Atomic # 8 Polarization: -9.49 SS G_CDS: 0.06 Total: -9.43 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -30.42 -10.33 -40.75 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000990716987.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.687 kcal
(2) G-P(sol) polarization free energy of solvation -30.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds