Wall clock time and date at job start Wed Apr 1 2020 02:54:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31609 * 1
3 3 Si 1.86802 * 120.00154 * 2 1
4 4 H 1.48507 * 109.46891 * 269.99881 * 3 2 1
5 5 H 1.48496 * 109.47387 * 29.99674 * 3 2 1
6 6 H 1.48496 * 109.47286 * 150.00083 * 3 2 1
7 7 C 1.38813 * 120.00286 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00845 * 179.97438 * 7 2 1
9 9 N 1.36944 * 119.99486 * 0.02562 * 7 2 1
10 10 C 1.47365 * 125.58084 * 359.97005 * 9 7 2
11 11 C 1.54866 * 104.81932 * 155.30724 * 10 9 7
12 12 C 1.54916 * 101.76540 * 37.07487 * 11 10 9
13 13 N 1.46497 * 112.33154 * 86.21984 * 12 11 10
14 14 C 1.34774 * 120.00821 * 61.01061 * 13 12 11
15 15 O 1.21634 * 119.99498 * 5.16864 * 14 13 12
16 16 C 1.47161 * 120.00396 * 185.17791 * 14 13 12
17 17 C 1.38404 * 126.88461 * 354.72058 * 16 14 13
18 18 C 1.39670 * 105.35628 * 180.02562 * 17 16 14
19 19 N 1.30857 * 107.86521 * 0.02562 * 18 17 16
20 20 N 1.28447 * 110.93105 * 359.97438 * 19 18 17
21 21 C 1.46493 * 125.19500 * 179.97438 * 20 19 18
22 22 C 1.53777 * 113.61340 * 42.30797 * 21 20 19
23 23 C 1.53782 * 87.08375 * 220.01886 * 22 21 20
24 24 C 1.53775 * 87.07859 * 25.43701 * 23 22 21
25 25 C 1.53590 * 109.08974 * 211.32850 * 12 11 10
26 26 C 1.55461 * 106.05417 * 112.99959 * 25 12 11
27 27 C 1.54757 * 104.36540 * 335.35966 * 26 25 12
28 28 C 1.46985 * 125.57702 * 179.97438 * 9 7 2
29 29 H 1.09001 * 111.81285 * 59.07273 * 28 9 7
30 30 H 0.96999 * 120.00052 * 0.02562 * 1 2 3
31 31 H 1.08994 * 110.36796 * 36.47321 * 10 9 7
32 32 H 1.08995 * 110.36887 * 274.14309 * 10 9 7
33 33 H 1.08998 * 110.97159 * 278.95459 * 11 10 9
34 34 H 1.08995 * 110.96846 * 155.19402 * 11 10 9
35 35 H 0.97008 * 119.99607 * 241.01169 * 13 12 11
36 36 H 1.07992 * 127.31795 * 0.03262 * 17 16 14
37 37 H 1.08003 * 126.06823 * 179.97438 * 18 17 16
38 38 H 1.08992 * 112.85434 * 173.61606 * 21 20 19
39 39 H 1.08997 * 113.62031 * 334.56858 * 22 21 20
40 40 H 1.09005 * 113.61713 * 105.47255 * 22 21 20
41 41 H 1.08993 * 113.61597 * 270.88482 * 23 22 21
42 42 H 1.09006 * 113.61268 * 139.98335 * 23 22 21
43 43 H 1.08997 * 113.61526 * 220.01973 * 24 23 22
44 44 H 1.08997 * 113.69937 * 89.12728 * 24 23 22
45 45 H 1.09001 * 110.01220 * 232.96997 * 25 12 11
46 46 H 1.08994 * 110.01769 * 354.36430 * 25 12 11
47 47 H 1.08997 * 110.50578 * 216.56415 * 26 25 12
48 48 H 1.09006 * 110.39925 * 94.09549 * 26 25 12
49 49 H 1.09000 * 110.66556 * 279.24734 * 27 26 25
50 50 H 1.09003 * 110.67244 * 156.11196 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0464 -1.4002
5 1 1.4477 2.6527 0.6999
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3254 -2.3881 0.0005
10 6 -0.1412 -2.5313 0.0006
11 6 -0.4033 -3.9236 -0.6248
12 6 0.7720 -4.7539 -0.0511
13 7 0.4651 -5.3168 1.2661
14 6 -0.5636 -6.1759 1.4089
15 8 -1.1779 -6.5569 0.4307
16 6 -0.9436 -6.6527 2.7482
17 6 -0.2868 -6.3953 3.9390
18 6 -1.0254 -7.0606 4.9201
19 7 -2.0312 -7.6554 4.3311
20 7 -2.0148 -7.4389 3.0651
21 6 -2.9947 -7.9568 2.1072
22 6 -4.4469 -7.8745 2.6063
23 6 -4.6602 -9.2596 1.9731
24 6 -3.1496 -9.4863 2.1505
25 6 1.1665 -5.8354 -1.0679
26 6 2.5894 -5.4576 -1.5671
27 6 2.6840 -3.9301 -1.3374
28 6 1.9331 -3.7264 0.0005
29 1 2.5741 -3.8802 0.8686
30 1 -0.4850 0.8400 -0.0004
31 1 -0.5987 -1.7504 -0.6067
32 1 -0.5259 -2.4948 1.0198
33 1 -0.3542 -3.8780 -1.7128
34 1 -1.3617 -4.3250 -0.2956
35 1 1.0022 -5.0712 2.0356
36 1 0.6067 -5.8053 4.0795
37 1 -0.8050 -7.0812 5.9772
38 1 -2.8541 -7.5605 1.1017
39 1 -4.5360 -7.8726 3.6926
40 1 -5.0276 -7.0834 2.1317
41 1 -4.9763 -9.2192 0.9308
42 1 -5.2757 -9.9259 2.5777
43 1 -2.6827 -9.9963 1.3080
44 1 -2.8824 -9.9252 3.1118
45 1 1.1700 -6.8144 -0.5887
46 1 0.4691 -5.8320 -1.9056
47 1 2.6972 -5.6917 -2.6262
48 1 3.3479 -5.9790 -0.9830
49 1 2.1884 -3.3886 -2.1431
50 1 3.7245 -3.6184 -1.2460
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000990716987.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:03
Heat of formation + Delta-G solvation = 77.713788 kcal
Electronic energy + Delta-G solvation = -31513.492557 eV
Core-core repulsion = 27543.045840 eV
Total energy + Delta-G solvation = -3970.446717 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-43.59598 -41.52380 -39.45817 -39.40893 -36.03573 -34.91912 -33.36528 -32.72714
-32.20224 -31.07834 -28.39577 -27.64152 -26.76299 -26.46585 -25.72247 -24.41828
-22.93379 -22.28812 -21.54050 -21.06061 -20.39757 -19.96988 -19.05595 -18.88873
-17.32145 -17.17194 -16.99378 -16.83112 -16.47421 -15.98803 -15.93206 -15.50860
-15.01752 -15.00327 -14.84804 -14.52420 -14.39721 -13.96814 -13.76120 -13.60282
-13.50914 -13.28299 -13.18346 -12.94784 -12.79740 -12.65345 -12.31191 -12.22239
-12.03076 -11.93080 -11.91198 -11.70910 -11.67129 -11.64243 -11.50174 -11.45391
-11.25406 -10.87176 -10.71262 -10.29682 -9.98826 -9.92859 -8.85678 -7.72624
-5.17370 0.20905 1.34282 1.49289 1.50188 1.58604 1.64757 2.10198
2.21106 2.52119 3.30551 3.31761 3.37177 3.46685 3.60065 3.62149
3.72619 3.75953 3.94626 3.95358 3.96542 4.14685 4.35590 4.39497
4.47501 4.50000 4.57490 4.58891 4.64657 4.67033 4.73253 4.80157
4.83153 4.86411 4.88288 4.94390 4.94898 4.97518 5.09690 5.16143
5.23186 5.31981 5.33026 5.48187 5.52725 5.57631 5.64724 5.66255
5.78369 5.83627 6.31822 6.41963 7.03352 7.11883 7.13056 7.81545
8.45164 9.28721
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014736 B = 0.003070 C = 0.002892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1899.668266 B = 9117.243191 C = 9677.901765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C -0.069 4.069
3 Si 0.976 3.024
4 H -0.288 1.288
5 H -0.300 1.300
6 H -0.268 1.268
7 C -0.222 4.222
8 H 0.087 0.913
9 N -0.611 5.611
10 C 0.163 3.837
11 C -0.129 4.129
12 C 0.172 3.828
13 N -0.684 5.684
14 C 0.593 3.407
15 O -0.561 6.561
16 C -0.063 4.063
17 C -0.184 4.184
18 C -0.007 4.007
19 N -0.290 5.290
20 N -0.251 5.251
21 C 0.093 3.907
22 C -0.140 4.140
23 C -0.120 4.120
24 C -0.133 4.133
25 C -0.104 4.104
26 C -0.110 4.110
27 C -0.123 4.123
28 C 0.155 3.845
29 H 0.060 0.940
30 H 0.243 0.757
31 H 0.071 0.929
32 H -0.020 1.020
33 H 0.069 0.931
34 H 0.059 0.941
35 H 0.411 0.589
36 H 0.181 0.819
37 H 0.218 0.782
38 H 0.136 0.864
39 H 0.091 0.909
40 H 0.077 0.923
41 H 0.099 0.901
42 H 0.096 0.904
43 H 0.081 0.919
44 H 0.088 0.912
45 H 0.068 0.932
46 H 0.065 0.935
47 H 0.078 0.922
48 H 0.081 0.919
49 H 0.050 0.950
50 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.746 -19.514 5.210 20.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.602 5.602
2 C -0.261 4.261
3 Si 0.805 3.195
4 H -0.216 1.216
5 H -0.227 1.227
6 H -0.192 1.192
7 C -0.351 4.351
8 H 0.104 0.896
9 N -0.335 5.335
10 C 0.038 3.962
11 C -0.169 4.169
12 C 0.086 3.914
13 N -0.334 5.334
14 C 0.379 3.621
15 O -0.441 6.441
16 C -0.191 4.191
17 C -0.213 4.213
18 C -0.182 4.182
19 N -0.123 5.123
20 N -0.039 5.039
21 C -0.007 4.007
22 C -0.178 4.178
23 C -0.158 4.158
24 C -0.172 4.172
25 C -0.143 4.143
26 C -0.148 4.148
27 C -0.163 4.163
28 C 0.048 3.952
29 H 0.078 0.922
30 H 0.053 0.947
31 H 0.089 0.911
32 H -0.002 1.002
33 H 0.088 0.912
34 H 0.078 0.922
35 H 0.247 0.753
36 H 0.198 0.802
37 H 0.235 0.765
38 H 0.153 0.847
39 H 0.110 0.890
40 H 0.095 0.905
41 H 0.117 0.883
42 H 0.115 0.885
43 H 0.100 0.900
44 H 0.107 0.893
45 H 0.086 0.914
46 H 0.083 0.917
47 H 0.097 0.903
48 H 0.100 0.900
49 H 0.069 0.931
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.244 -20.255 4.632 21.029
hybrid contribution 1.014 2.146 0.333 2.397
sum -2.230 -18.108 4.965 18.909
Atomic orbital electron populations
1.70055 1.06303 1.24669 1.59152 1.25574 0.96432 1.00872 1.03264
0.85106 0.77663 0.79442 0.77297 1.21563 1.22715 1.19235 1.19407
0.91038 0.83232 1.41438 0.89553 1.44707 1.01795 1.00553 1.86424
1.21610 0.84755 0.94094 0.95790 1.23142 0.97560 0.96278 0.99889
1.21555 0.94930 0.92592 0.82351 1.45501 1.31803 1.44601 1.11509
1.17031 0.80107 0.78539 0.86418 1.90694 1.54106 1.58803 1.40474
1.21554 0.96046 1.05465 0.96010 1.22648 1.03504 1.05027 0.90136
1.24142 0.92789 0.99283 1.01989 1.73042 1.24388 1.23329 0.91511
1.45957 1.19051 1.33787 1.05062 1.24028 0.87120 0.97411 0.92172
1.23337 0.92533 0.99749 1.02195 1.22672 0.95030 0.95578 1.02509
1.23297 0.98198 0.92267 1.03408 1.22431 0.97577 0.96938 0.97306
1.22513 0.95731 0.94659 1.01866 1.22779 1.00145 0.96190 0.97228
1.22053 0.92328 0.83820 0.96969 0.92239 0.94685 0.91059 1.00198
0.91200 0.92233 0.75278 0.80159 0.76529 0.84658 0.89036 0.90459
0.88272 0.88532 0.90000 0.89302 0.91375 0.91662 0.90292 0.90027
0.93094 0.91334
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.50 10.07 21.65 0.22 -56.29 16
2 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16
3 Si 0.98 44.92 29.55 68.60 2.03 46.95 16
4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16
5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16
6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
7 C -0.22 -11.80 10.01 84.03 0.84 -10.96 16
8 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16
9 N -0.61 -29.64 3.03 -663.73 -2.01 -31.65 16
10 C 0.16 8.14 5.91 86.85 0.51 8.65 16
11 C -0.13 -5.27 5.73 31.89 0.18 -5.09 16
12 C 0.17 5.87 0.74 5.19 0.00 5.87 16
13 N -0.68 -20.94 5.21 -419.26 -2.19 -23.13 16
14 C 0.59 18.80 6.95 86.59 0.60 19.40 16
15 O -0.56 -19.82 12.34 -4.14 -0.05 -19.87 16
16 C -0.06 -1.79 6.96 40.78 0.28 -1.51 16
17 C -0.18 -4.27 10.50 22.66 0.24 -4.04 16
18 C -0.01 -0.15 12.03 85.18 1.02 0.87 16
19 N -0.29 -7.45 11.14 -57.14 -0.64 -8.09 16
20 N -0.25 -6.88 3.46 -311.83 -1.08 -7.96 16
21 C 0.09 2.25 4.42 45.52 0.20 2.45 16
22 C -0.14 -2.77 7.74 31.12 0.24 -2.53 16
23 C -0.12 -1.76 8.08 31.12 0.25 -1.51 16
24 C -0.13 -2.49 7.80 31.12 0.24 -2.25 16
25 C -0.10 -3.04 5.34 31.64 0.17 -2.87 16
26 C -0.11 -2.81 6.87 32.04 0.22 -2.59 16
27 C -0.12 -4.08 6.22 31.80 0.20 -3.89 16
28 C 0.16 5.81 3.67 46.23 0.17 5.97 16
29 H 0.06 2.12 7.96 -2.39 -0.02 2.10 16
30 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16
31 H 0.07 4.12 5.82 -2.39 -0.01 4.11 16
32 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16
33 H 0.07 2.83 7.63 -2.39 -0.02 2.81 16
34 H 0.06 2.48 6.70 -2.39 -0.02 2.46 16
35 H 0.41 11.04 7.51 -92.70 -0.70 10.34 16
36 H 0.18 3.21 7.58 -2.91 -0.02 3.19 16
37 H 0.22 2.94 8.06 -2.91 -0.02 2.92 16
38 H 0.14 3.78 5.69 -2.39 -0.01 3.77 16
39 H 0.09 1.92 7.74 -2.39 -0.02 1.90 16
40 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16
41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
42 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16
43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
44 H 0.09 1.73 8.05 -2.39 -0.02 1.72 16
45 H 0.07 1.94 7.48 -2.39 -0.02 1.92 16
46 H 0.06 2.00 7.37 -2.39 -0.02 1.99 16
47 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
48 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16
49 H 0.05 1.94 8.09 -2.39 -0.02 1.92 16
50 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
Total: -1.00 -67.85 387.55 2.39 -65.46
By element:
Atomic # 1 Polarization: 31.69 SS G_CDS: 0.26 Total: 31.95 kcal
Atomic # 6 Polarization: -3.24 SS G_CDS: 5.85 Total: 2.61 kcal
Atomic # 7 Polarization: -121.41 SS G_CDS: -5.69 Total: -127.10 kcal
Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal
Total: -67.85 2.39 -65.46 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000990716987.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.175 kcal
(2) G-P(sol) polarization free energy of solvation -67.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds