Wall clock time and date at job start Wed Apr 1 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00261 * 2 1 4 4 H 1.48501 * 109.47420 * 270.00356 * 3 2 1 5 5 H 1.48505 * 109.47034 * 30.00243 * 3 2 1 6 6 H 1.48494 * 109.47403 * 149.99945 * 3 2 1 7 7 C 1.38811 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99999 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.49892 * 127.41450 * 359.36443 * 9 7 2 11 11 C 1.56228 * 106.52677 * 171.32991 * 10 9 7 12 12 C 1.52134 * 100.80948 * 336.89630 * 11 10 9 13 13 N 1.46507 * 111.08441 * 286.03634 * 12 11 10 14 14 C 1.34778 * 119.99899 * 288.30975 * 13 12 11 15 15 O 1.21282 * 120.00126 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99958 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.47861 * 299.99498 * 16 14 13 18 18 C 1.53119 * 109.47784 * 179.97438 * 16 14 13 19 19 C 1.53358 * 109.52763 * 169.99042 * 18 16 14 20 20 C 1.50866 * 108.41022 * 49.98579 * 19 18 16 21 21 N 1.33576 * 128.02802 * 163.22807 * 20 19 18 22 22 C 1.30756 * 109.14305 * 180.15638 * 21 20 19 23 23 N 1.35309 * 108.76992 * 359.97438 * 22 21 20 24 24 H 0.97000 * 126.49734 * 179.97438 * 23 22 21 25 25 C 1.35024 * 123.99251 * 343.33860 * 20 19 18 26 26 C 1.50652 * 124.45200 * 359.82531 * 25 20 19 27 27 C 1.51227 * 122.12130 * 151.20769 * 12 11 10 28 28 C 1.55693 * 104.60202 * 218.72711 * 27 12 11 29 29 C 1.56284 * 105.93915 * 7.24500 * 28 27 12 30 30 C 1.42708 * 127.10635 * 179.97438 * 9 7 2 31 31 H 1.09002 * 108.17360 * 103.46041 * 30 9 7 32 32 H 0.97003 * 119.99880 * 359.97438 * 1 2 3 33 33 H 1.09008 * 109.75794 * 52.22144 * 10 9 7 34 34 H 1.09000 * 110.37167 * 290.78082 * 10 9 7 35 35 H 1.08997 * 111.15438 * 219.00674 * 11 10 9 36 36 H 1.09004 * 111.14975 * 94.77815 * 11 10 9 37 37 H 0.96995 * 119.99778 * 108.30125 * 13 12 11 38 38 H 1.08997 * 109.46637 * 290.01335 * 18 16 14 39 39 H 1.09002 * 109.45703 * 49.97774 * 18 16 14 40 40 H 1.08999 * 109.69108 * 290.24914 * 19 18 16 41 41 H 1.08997 * 109.66437 * 169.70763 * 19 18 16 42 42 H 1.08004 * 125.61467 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.68781 * 223.87978 * 26 25 20 44 44 H 1.08996 * 109.68641 * 103.32380 * 26 25 20 45 45 H 1.08998 * 110.40885 * 337.50566 * 27 12 11 46 46 H 1.08990 * 110.40923 * 99.82516 * 27 12 11 47 47 H 1.09000 * 110.15707 * 126.36463 * 28 27 12 48 48 H 1.09000 * 110.15613 * 248.06059 * 28 27 12 49 49 H 1.09000 * 110.97334 * 266.14475 * 29 28 27 50 50 H 1.09001 * 110.96796 * 142.37888 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1608 -2.5815 0.0109 11 6 -0.4126 -4.1057 -0.2220 12 6 0.8807 -4.5056 -0.9163 13 7 0.9089 -4.0202 -2.2984 14 6 0.1164 -4.5886 -3.2286 15 8 -0.6198 -5.5024 -2.9217 16 6 0.1449 -4.0889 -4.6500 17 1 -0.1378 -3.0365 -4.6710 18 6 -0.8409 -4.8995 -5.4960 19 6 -1.0001 -4.2391 -6.8709 20 6 0.3741 -3.9811 -7.4376 21 7 0.7053 -3.7143 -8.7038 22 6 2.0009 -3.5568 -8.7841 23 7 2.5366 -3.7210 -7.5525 24 1 3.4761 -3.6600 -7.3192 25 6 1.5071 -3.9883 -6.7031 26 6 1.5599 -4.2497 -5.2204 27 6 1.4529 -5.9013 -0.8085 28 6 2.9916 -5.6876 -0.7041 29 6 3.2026 -4.1449 -0.5703 30 6 1.8807 -3.7027 -0.0028 31 1 1.7908 -4.1106 1.0041 32 1 -0.4850 0.8401 0.0004 33 1 -0.6148 -2.0008 -0.7922 34 1 -0.5750 -2.2769 0.9720 35 1 -1.2735 -4.2676 -0.8706 36 1 -0.5305 -4.6339 0.7241 37 1 1.4978 -3.2896 -2.5438 38 1 -0.4628 -5.9140 -5.6220 39 1 -1.8082 -4.9322 -4.9947 40 1 -1.5366 -3.2962 -6.7656 41 1 -1.5522 -4.9038 -7.5354 42 1 2.5524 -3.3317 -9.6850 43 1 2.2308 -3.5342 -4.7450 44 1 1.9158 -5.2638 -5.0388 45 1 1.0767 -6.3983 0.0857 46 1 1.2075 -6.4824 -1.6972 47 1 3.3828 -6.1980 0.1761 48 1 3.4841 -6.0586 -1.6029 49 1 3.3805 -3.6896 -1.5446 50 1 4.0176 -3.9209 0.1180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992437104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:30 Heat of formation + Delta-G solvation = 30.444437 kcal Electronic energy + Delta-G solvation = -31933.809718 eV Core-core repulsion = 27961.313248 eV Total energy + Delta-G solvation = -3972.496470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.20917 -41.93749 -39.89762 -37.05622 -36.09197 -34.50392 -34.04825 -33.50130 -31.71984 -30.69690 -30.07425 -28.51385 -27.26972 -25.92954 -25.07707 -23.95492 -22.50384 -22.19162 -21.62506 -21.17273 -20.06667 -19.85011 -18.80801 -18.34870 -17.95444 -17.34794 -16.57086 -16.40236 -16.16727 -15.83380 -15.71879 -15.47061 -15.44521 -14.79575 -14.78447 -14.54432 -14.19564 -14.12613 -14.04226 -13.68092 -13.44935 -13.04819 -13.00055 -12.85842 -12.83681 -12.59640 -12.53909 -12.17426 -12.08310 -12.01974 -11.97856 -11.88814 -11.77760 -11.52025 -11.32015 -11.00013 -10.86103 -10.78110 -10.71917 -10.47087 -9.83530 -9.10259 -8.85296 -7.82643 -5.17772 1.09627 1.47551 1.49067 1.57055 1.74065 2.15206 2.21487 2.39722 2.51221 3.12667 3.38149 3.48179 3.67643 3.75304 3.83063 3.84351 3.93709 4.13719 4.18046 4.24078 4.31543 4.34390 4.42055 4.45053 4.48196 4.57324 4.61083 4.62992 4.67972 4.77746 4.84102 4.91623 4.97661 5.02339 5.07508 5.10149 5.14752 5.15617 5.26796 5.29326 5.32071 5.34358 5.51383 5.57865 5.62712 5.70812 5.79792 5.85883 6.19233 6.60929 6.74814 7.05054 7.15745 7.40479 7.78279 8.51950 9.29472 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009938 B = 0.003913 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.677100 B = 7153.056351 C = 8357.917783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.060 4.060 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.597 5.597 10 C 0.189 3.811 11 C -0.129 4.129 12 C 0.141 3.859 13 N -0.687 5.687 14 C 0.522 3.478 15 O -0.571 6.571 16 C -0.095 4.095 17 H 0.095 0.905 18 C -0.085 4.085 19 C -0.031 4.031 20 C -0.022 4.022 21 N -0.531 5.531 22 C 0.185 3.815 23 N -0.548 5.548 24 H 0.437 0.563 25 C -0.027 4.027 26 C -0.021 4.021 27 C -0.107 4.107 28 C -0.102 4.102 29 C -0.109 4.109 30 C 0.145 3.855 31 H 0.013 0.987 32 H 0.244 0.756 33 H 0.032 0.968 34 H -0.002 1.002 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.247 0.753 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.625 -11.438 -12.487 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.320 5.320 10 C 0.065 3.935 11 C -0.168 4.168 12 C 0.053 3.947 13 N -0.337 5.337 14 C 0.309 3.691 15 O -0.451 6.451 16 C -0.117 4.117 17 H 0.113 0.887 18 C -0.124 4.124 19 C -0.069 4.069 20 C -0.151 4.151 21 N -0.250 5.250 22 C -0.098 4.098 23 N -0.152 5.152 24 H 0.278 0.722 25 C -0.145 4.145 26 C -0.060 4.060 27 C -0.145 4.145 28 C -0.140 4.140 29 C -0.147 4.147 30 C 0.036 3.964 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.238 0.762 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.263 0.737 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.521 -11.776 -12.893 19.012 hybrid contribution 0.974 1.849 0.961 2.300 sum 8.495 -9.927 -11.932 17.694 Atomic orbital electron populations 1.70124 1.06365 1.25062 1.58366 1.25516 0.96253 1.00646 1.02938 0.85208 0.77715 0.79820 0.77356 1.21326 1.23042 1.19368 1.19372 0.90825 0.83088 1.42457 0.89300 1.43907 1.01760 1.00378 1.85971 1.21779 0.83420 0.90898 0.97417 1.22632 0.97620 0.96585 0.99924 1.21425 0.96161 0.95188 0.81957 1.45735 1.42798 1.37120 1.08052 1.20678 0.79042 0.81994 0.87432 1.90638 1.41025 1.31005 1.82424 1.21259 0.97561 1.02118 0.90742 0.88693 1.21288 0.99066 0.98574 0.93462 1.19920 0.91039 1.01045 0.94883 1.20770 0.96197 1.08302 0.89852 1.69940 1.13676 1.20447 1.20985 1.25798 0.89826 1.04060 0.90093 1.42887 1.10545 1.53527 1.08277 0.72219 1.20858 0.88703 1.10564 0.94329 1.19897 0.95483 1.03440 0.87183 1.21847 0.96058 0.94148 1.02471 1.22746 0.94300 0.93972 1.02962 1.21841 0.95754 0.96185 1.00923 1.21049 0.94516 0.85349 0.95493 0.96948 0.94656 0.94984 0.98376 0.92189 0.90568 0.76195 0.91265 0.90957 0.90883 0.89935 0.73727 0.89049 0.89106 0.90594 0.91414 0.90147 0.90105 0.91366 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.31 10.59 21.65 0.23 -55.08 16 2 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 3 Si 0.97 43.67 29.55 68.60 2.03 45.70 16 4 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.23 -11.69 10.28 84.03 0.86 -10.82 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.60 -27.98 3.12 -667.11 -2.08 -30.06 16 10 C 0.19 9.16 5.37 86.84 0.47 9.62 16 11 C -0.13 -5.03 6.20 31.43 0.19 -4.84 16 12 C 0.14 4.73 0.40 4.31 0.00 4.73 16 13 N -0.69 -21.75 4.29 -419.71 -1.80 -23.55 16 14 C 0.52 16.09 6.46 87.66 0.57 16.66 16 15 O -0.57 -20.68 13.97 -3.04 -0.04 -20.73 16 16 C -0.09 -2.39 2.51 -11.36 -0.03 -2.42 16 17 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 18 C -0.09 -2.10 4.64 30.75 0.14 -1.96 16 19 C -0.03 -0.73 6.30 30.02 0.19 -0.55 16 20 C -0.02 -0.56 6.98 41.61 0.29 -0.27 16 21 N -0.53 -13.61 11.25 -187.89 -2.11 -15.72 16 22 C 0.19 3.15 13.05 180.10 2.35 5.50 16 23 N -0.55 -8.35 6.14 -186.45 -1.15 -9.49 16 24 H 0.44 3.43 8.96 -92.71 -0.83 2.60 16 25 C -0.03 -0.58 7.08 41.14 0.29 -0.29 16 26 C -0.02 -0.43 5.43 29.97 0.16 -0.26 16 27 C -0.11 -2.92 6.05 30.94 0.19 -2.73 16 28 C -0.10 -2.29 6.94 32.67 0.23 -2.06 16 29 C -0.11 -3.07 6.45 30.93 0.20 -2.87 16 30 C 0.14 5.35 2.60 46.45 0.12 5.47 16 31 H 0.01 0.51 7.98 -2.39 -0.02 0.49 16 32 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.03 1.75 7.04 -2.38 -0.02 1.73 16 34 H 0.00 -0.11 8.02 -2.39 -0.02 -0.13 16 35 H 0.06 2.45 7.17 -2.39 -0.02 2.43 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.40 12.82 7.47 -92.71 -0.69 12.12 16 38 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 39 H 0.07 1.92 7.76 -2.39 -0.02 1.90 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.25 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.09 1.63 7.90 -2.39 -0.02 1.61 16 44 H 0.09 1.68 8.11 -2.39 -0.02 1.66 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.07 1.93 6.86 -2.39 -0.02 1.91 16 47 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.88 7.38 -2.39 -0.02 1.86 16 50 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.16 384.55 1.21 -69.95 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.56 Total: 28.85 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.69 Total: 10.13 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -6.91 Total: -133.91 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.04 Total: -20.73 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -71.16 1.21 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992437104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.398 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds