Wall clock time and date at job start Wed Apr 1 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38552 * 120.01546 * 2 1 4 4 C 1.40072 * 117.81377 * 180.26287 * 3 2 1 5 5 C 1.48141 * 121.14379 * 179.74258 * 4 3 2 6 6 O 1.21517 * 119.99966 * 135.45264 * 5 4 3 7 7 N 1.34780 * 119.99826 * 315.44804 * 5 4 3 8 8 C 1.48243 * 125.78120 * 354.71228 * 7 5 4 9 9 C 1.53112 * 106.41707 * 177.78356 * 8 7 5 10 10 H 1.08998 * 109.18224 * 271.22941 * 9 8 7 11 11 C 1.51448 * 118.46340 * 144.00755 * 9 8 7 12 12 C 1.53837 * 107.04194 * 181.10635 * 11 9 8 13 13 C 1.52535 * 111.73242 * 57.14837 * 12 11 9 14 14 C 1.53816 * 111.69736 * 306.10146 * 13 12 11 15 15 H 1.09005 * 109.94132 * 297.98074 * 14 13 12 16 16 N 1.46497 * 109.94612 * 176.81933 * 14 13 12 17 17 C 1.36941 * 120.00229 * 86.16542 * 16 14 13 18 18 H 1.07997 * 119.99425 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99810 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99530 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47084 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47505 * 300.00241 * 21 19 17 24 24 H 1.48503 * 109.47101 * 60.00520 * 21 19 17 25 25 C 1.51621 * 107.09299 * 57.39534 * 14 13 12 26 26 H 1.08997 * 110.50237 * 55.23716 * 25 14 13 27 27 C 1.48660 * 125.78274 * 174.73186 * 7 5 4 28 28 C 1.39766 * 117.70934 * 359.46684 * 4 3 2 29 29 C 1.50697 * 120.17212 * 180.29525 * 28 4 3 30 30 N 1.31888 * 119.65559 * 0.27857 * 28 4 3 31 31 N 1.28277 * 122.33139 * 359.97438 * 30 28 4 32 32 H 1.09004 * 109.47459 * 270.27873 * 1 2 3 33 33 H 1.09001 * 109.47323 * 30.27869 * 1 2 3 34 34 H 1.09000 * 109.47532 * 150.27877 * 1 2 3 35 35 H 1.07999 * 121.09309 * 0.02562 * 3 2 1 36 36 H 1.09002 * 110.17376 * 295.93384 * 8 7 5 37 37 H 1.08994 * 110.17319 * 57.66446 * 8 7 5 38 38 H 1.09000 * 109.93924 * 300.49170 * 11 9 8 39 39 H 1.09006 * 109.93716 * 61.72134 * 11 9 8 40 40 H 1.09001 * 109.04044 * 177.76136 * 12 11 9 41 41 H 1.08997 * 109.04581 * 296.63739 * 12 11 9 42 42 H 1.09000 * 109.11505 * 185.47913 * 13 12 11 43 43 H 1.09009 * 108.96073 * 66.61791 * 13 12 11 44 44 H 0.96999 * 120.00148 * 266.16523 * 16 14 13 45 45 H 0.96991 * 119.99957 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.62474 * 37.11937 * 27 7 5 47 47 H 1.09000 * 110.62759 * 274.09548 * 27 7 5 48 48 H 1.09003 * 109.47505 * 94.08618 * 29 28 4 49 49 H 1.09008 * 109.47353 * 214.08424 * 29 28 4 50 50 H 1.08998 * 109.47365 * 334.08252 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5997 1.1459 -0.0057 5 6 4.4140 2.3834 -0.0118 6 8 5.3776 2.4804 0.7223 7 7 4.0862 3.4018 -0.8315 8 6 3.0117 3.3810 -1.8527 9 6 2.9876 4.7758 -2.4839 10 1 2.3191 5.4172 -1.9098 11 6 2.6839 4.8935 -3.9629 12 6 2.7547 6.3882 -4.3201 13 6 4.1116 6.9894 -3.9680 14 6 4.4817 6.7350 -2.4968 15 1 3.7526 7.2125 -1.8421 16 7 5.8209 7.2606 -2.2203 17 6 5.9816 8.5740 -1.8674 18 1 5.1209 9.2221 -1.7925 19 6 7.2505 9.0718 -1.6049 20 7 8.2992 8.2818 -1.6957 21 14 7.4696 10.8636 -1.1241 22 1 8.9107 11.1431 -0.8996 23 1 6.9609 11.7344 -2.2141 24 1 6.7116 11.1377 0.1231 25 6 4.4615 5.2337 -2.2854 26 1 5.1183 4.7386 -3.0006 27 6 4.7410 4.7360 -0.8652 28 6 4.2017 -0.1155 0.0005 29 6 5.7036 -0.2380 0.0016 30 7 3.4483 -1.1980 0.0058 31 7 2.1667 -1.1420 0.0060 32 1 -0.3634 0.0050 1.0277 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3634 -0.8924 -0.5095 35 1 1.6783 2.1453 0.0004 36 1 3.2397 2.6446 -2.6233 37 1 2.0539 3.1518 -1.3859 38 1 3.4234 4.3380 -4.5397 39 1 1.6849 4.5090 -4.1690 40 1 2.5798 6.5069 -5.3894 41 1 1.9780 6.9219 -3.7726 42 1 4.0830 8.0642 -4.1466 43 1 4.8733 6.5440 -4.6082 44 1 6.5938 6.6784 -2.2872 45 1 9.1858 8.6297 -1.5119 46 1 5.8135 4.6416 -0.6955 47 1 4.2919 5.4028 -0.1292 48 1 6.0596 -0.3356 1.0273 49 1 5.9968 -1.1186 -0.5700 50 1 6.1411 0.6515 -0.4517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992719010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:04 Heat of formation + Delta-G solvation = 29.616168 kcal Electronic energy + Delta-G solvation = -30796.640248 eV Core-core repulsion = 26824.107862 eV Total energy + Delta-G solvation = -3972.532386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66673 -40.35099 -38.73283 -35.78982 -34.77305 -34.07082 -33.87436 -31.59848 -30.94362 -29.95058 -28.98389 -27.14373 -26.92049 -25.88229 -24.31559 -23.33502 -22.88564 -21.05950 -20.51690 -19.85093 -19.76558 -18.06365 -17.50623 -17.05416 -16.27563 -16.05329 -15.66234 -15.39187 -14.97892 -14.60316 -14.36994 -14.26580 -14.15102 -13.76832 -13.71671 -13.58549 -13.09262 -13.03461 -12.94590 -12.69919 -12.61105 -12.55415 -12.36975 -12.18798 -12.03931 -11.53787 -11.27545 -11.05208 -10.96047 -10.84863 -10.65786 -10.60140 -10.48274 -10.32837 -10.27896 -10.22905 -9.86072 -9.78794 -9.73524 -9.54617 -8.93681 -8.75668 -7.02003 -5.80463 -3.10241 0.12639 0.51198 2.41405 2.64704 3.18665 3.40972 3.45738 3.47002 3.59227 3.88380 4.03152 4.11135 4.25699 4.40463 4.52217 4.69241 4.70213 4.81679 4.92429 5.07078 5.10867 5.14530 5.24670 5.26730 5.34314 5.37753 5.42028 5.44256 5.47368 5.50041 5.59362 5.70630 5.72981 5.75031 5.79561 5.81807 5.95239 5.98690 5.99198 6.03093 6.09068 6.16226 6.32739 6.43646 6.50514 6.54437 6.78423 7.00495 7.29682 7.65261 7.87040 8.36950 8.37261 9.48817 10.04490 10.38887 11.41707 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.002830 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.280738 B = 9891.444727 C =11113.394990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.059 3.941 3 C -0.086 4.086 4 C -0.114 4.114 5 C 0.575 3.425 6 O -0.514 6.514 7 N -0.612 5.612 8 C 0.105 3.895 9 C -0.106 4.106 10 H 0.084 0.916 11 C -0.098 4.098 12 C -0.114 4.114 13 C -0.139 4.139 14 C 0.196 3.804 15 H 0.051 0.949 16 N -0.722 5.722 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 C -0.103 4.103 26 H 0.081 0.919 27 C 0.124 3.876 28 C 0.111 3.889 29 C -0.102 4.102 30 N -0.239 5.239 31 N -0.229 5.229 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 -14.816 -1.509 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.115 4.115 4 C -0.129 4.129 5 C 0.361 3.639 6 O -0.390 6.390 7 N -0.346 5.346 8 C -0.018 4.018 9 C -0.125 4.125 10 H 0.102 0.898 11 C -0.136 4.136 12 C -0.152 4.152 13 C -0.180 4.180 14 C 0.086 3.914 15 H 0.069 0.931 16 N -0.362 5.362 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.213 1.213 25 C -0.123 4.123 26 H 0.099 0.901 27 C 0.004 3.996 28 C -0.034 4.034 29 C -0.160 4.160 30 N -0.081 5.081 31 N -0.072 5.072 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.174 0.826 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.473 -16.282 -0.982 23.182 hybrid contribution 0.428 2.481 0.175 2.524 sum -16.045 -13.801 -0.807 21.179 Atomic orbital electron populations 1.20691 0.86935 1.04305 1.03846 1.22854 0.99275 0.89891 0.96572 1.22590 0.93126 1.00535 0.95241 1.21145 0.94601 0.95538 1.01605 1.17492 0.84081 0.81661 0.80688 1.90857 1.26906 1.80643 1.40601 1.49119 1.35545 1.14064 1.35827 1.22047 0.90169 0.98990 0.90581 1.21982 0.98517 0.94708 0.97290 0.89769 1.21262 1.01096 0.97605 0.93633 1.21541 0.98828 0.94406 1.00447 1.22335 0.94944 1.00914 0.99802 1.19962 0.89518 0.88693 0.93269 0.93060 1.42395 1.02045 1.09752 1.82024 1.19149 0.92524 0.86808 1.38878 0.91260 1.24733 0.95604 0.97873 1.02426 1.69638 0.98036 1.34714 1.55430 0.86308 0.76741 0.85003 0.78346 1.21711 1.21314 1.21256 1.22391 0.95212 0.99009 0.95718 0.90066 1.22079 0.99368 0.80524 0.97621 1.23038 0.99545 0.88511 0.92309 1.20780 0.86515 1.04209 1.04530 1.73025 0.98958 1.26157 1.09955 1.72801 1.01759 1.24906 1.07753 0.89695 0.90043 0.89682 0.82570 0.91439 0.91149 0.91640 0.92035 0.92581 0.92489 0.91891 0.92728 0.78179 0.93386 0.89229 0.90519 0.88932 0.89856 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.19 36.00 0.37 -0.18 16 2 C 0.06 0.55 6.86 -82.45 -0.57 -0.01 16 3 C -0.09 -0.81 8.28 -38.78 -0.32 -1.13 16 4 C -0.11 -1.39 5.42 -104.57 -0.57 -1.95 16 5 C 0.57 8.18 6.72 -12.19 -0.08 8.10 16 6 O -0.51 -9.10 15.65 5.35 0.08 -9.01 16 7 N -0.61 -7.95 3.38 -171.40 -0.58 -8.53 16 8 C 0.10 1.02 5.86 -3.02 -0.02 1.00 16 9 C -0.11 -1.12 2.34 -89.95 -0.21 -1.33 16 10 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 11 C -0.10 -0.95 5.75 -27.08 -0.16 -1.11 16 12 C -0.11 -1.31 5.83 -26.53 -0.15 -1.46 16 13 C -0.14 -2.18 5.47 -26.54 -0.15 -2.32 16 14 C 0.20 3.42 2.51 -68.21 -0.17 3.25 16 15 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 16 N -0.72 -16.72 5.07 -53.69 -0.27 -17.00 16 17 C -0.24 -6.38 9.95 -15.06 -0.15 -6.53 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.10 -1.48 1.95 -89.90 -0.18 -1.66 16 26 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 27 C 0.12 1.91 6.53 -2.82 -0.02 1.90 16 28 C 0.11 1.40 6.90 -82.00 -0.57 0.83 16 29 C -0.10 -1.15 9.36 36.00 0.34 -0.81 16 30 N -0.24 -3.19 11.42 33.81 0.39 -2.80 16 31 N -0.23 -2.83 11.40 33.58 0.38 -2.45 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.16 1.07 6.27 -52.49 -0.33 0.74 16 36 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.07 0.52 5.61 -51.93 -0.29 0.23 16 38 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 44 H 0.38 9.66 7.80 -40.82 -0.32 9.34 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 47 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 50 H 0.08 1.05 6.44 -51.93 -0.33 0.71 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -31.97 396.08 -8.98 -40.95 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.96 Total: 6.49 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.69 Total: -3.78 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.64 Total: -57.48 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.97 -8.98 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.567 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds