Wall clock time and date at job start Wed Apr 1 2020 03:33:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38552 * 120.01546 * 2 1
4 4 C 1.40072 * 117.81377 * 180.26287 * 3 2 1
5 5 C 1.48141 * 121.14379 * 179.74258 * 4 3 2
6 6 O 1.21517 * 119.99966 * 135.45264 * 5 4 3
7 7 N 1.34780 * 119.99826 * 315.44804 * 5 4 3
8 8 C 1.48243 * 125.78120 * 354.71228 * 7 5 4
9 9 C 1.53112 * 106.41707 * 177.78356 * 8 7 5
10 10 H 1.08998 * 109.18224 * 271.22941 * 9 8 7
11 11 C 1.51448 * 118.46340 * 144.00755 * 9 8 7
12 12 C 1.53837 * 107.04194 * 181.10635 * 11 9 8
13 13 C 1.52535 * 111.73242 * 57.14837 * 12 11 9
14 14 C 1.53816 * 111.69736 * 306.10146 * 13 12 11
15 15 H 1.09005 * 109.94132 * 297.98074 * 14 13 12
16 16 N 1.46497 * 109.94612 * 176.81933 * 14 13 12
17 17 C 1.36941 * 120.00229 * 86.16542 * 16 14 13
18 18 H 1.07997 * 119.99425 * 0.02562 * 17 16 14
19 19 C 1.38809 * 119.99810 * 179.97438 * 17 16 14
20 20 N 1.31618 * 120.00513 * 0.02562 * 19 17 16
21 21 Si 1.86802 * 119.99530 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47084 * 180.02562 * 21 19 17
23 23 H 1.48499 * 109.47505 * 300.00241 * 21 19 17
24 24 H 1.48503 * 109.47101 * 60.00520 * 21 19 17
25 25 C 1.51621 * 107.09299 * 57.39534 * 14 13 12
26 26 H 1.08997 * 110.50237 * 55.23716 * 25 14 13
27 27 C 1.48660 * 125.78274 * 174.73186 * 7 5 4
28 28 C 1.39766 * 117.70934 * 359.46684 * 4 3 2
29 29 C 1.50697 * 120.17212 * 180.29525 * 28 4 3
30 30 N 1.31888 * 119.65559 * 0.27857 * 28 4 3
31 31 N 1.28277 * 122.33139 * 359.97438 * 30 28 4
32 32 H 1.09004 * 109.47459 * 270.27873 * 1 2 3
33 33 H 1.09001 * 109.47323 * 30.27869 * 1 2 3
34 34 H 1.09000 * 109.47532 * 150.27877 * 1 2 3
35 35 H 1.07999 * 121.09309 * 0.02562 * 3 2 1
36 36 H 1.09002 * 110.17376 * 295.93384 * 8 7 5
37 37 H 1.08994 * 110.17319 * 57.66446 * 8 7 5
38 38 H 1.09000 * 109.93924 * 300.49170 * 11 9 8
39 39 H 1.09006 * 109.93716 * 61.72134 * 11 9 8
40 40 H 1.09001 * 109.04044 * 177.76136 * 12 11 9
41 41 H 1.08997 * 109.04581 * 296.63739 * 12 11 9
42 42 H 1.09000 * 109.11505 * 185.47913 * 13 12 11
43 43 H 1.09009 * 108.96073 * 66.61791 * 13 12 11
44 44 H 0.96999 * 120.00148 * 266.16523 * 16 14 13
45 45 H 0.96991 * 119.99957 * 180.02562 * 20 19 17
46 46 H 1.08997 * 110.62474 * 37.11937 * 27 7 5
47 47 H 1.09000 * 110.62759 * 274.09548 * 27 7 5
48 48 H 1.09003 * 109.47505 * 94.08618 * 29 28 4
49 49 H 1.09008 * 109.47353 * 214.08424 * 29 28 4
50 50 H 1.08998 * 109.47365 * 334.08252 * 29 28 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2001 1.1997 0.0000
4 6 3.5997 1.1459 -0.0057
5 6 4.4140 2.3834 -0.0118
6 8 5.3776 2.4804 0.7223
7 7 4.0862 3.4018 -0.8315
8 6 3.0117 3.3810 -1.8527
9 6 2.9876 4.7758 -2.4839
10 1 2.3191 5.4172 -1.9098
11 6 2.6839 4.8935 -3.9629
12 6 2.7547 6.3882 -4.3201
13 6 4.1116 6.9894 -3.9680
14 6 4.4817 6.7350 -2.4968
15 1 3.7526 7.2125 -1.8421
16 7 5.8209 7.2606 -2.2203
17 6 5.9816 8.5740 -1.8674
18 1 5.1209 9.2221 -1.7925
19 6 7.2505 9.0718 -1.6049
20 7 8.2992 8.2818 -1.6957
21 14 7.4696 10.8636 -1.1241
22 1 8.9107 11.1431 -0.8996
23 1 6.9609 11.7344 -2.2141
24 1 6.7116 11.1377 0.1231
25 6 4.4615 5.2337 -2.2854
26 1 5.1183 4.7386 -3.0006
27 6 4.7410 4.7360 -0.8652
28 6 4.2017 -0.1155 0.0005
29 6 5.7036 -0.2380 0.0016
30 7 3.4483 -1.1980 0.0058
31 7 2.1667 -1.1420 0.0060
32 1 -0.3634 0.0050 1.0277
33 1 -0.3634 0.8875 -0.5182
34 1 -0.3634 -0.8924 -0.5095
35 1 1.6783 2.1453 0.0004
36 1 3.2397 2.6446 -2.6233
37 1 2.0539 3.1518 -1.3859
38 1 3.4234 4.3380 -4.5397
39 1 1.6849 4.5090 -4.1690
40 1 2.5798 6.5069 -5.3894
41 1 1.9780 6.9219 -3.7726
42 1 4.0830 8.0642 -4.1466
43 1 4.8733 6.5440 -4.6082
44 1 6.5938 6.6784 -2.2872
45 1 9.1858 8.6297 -1.5119
46 1 5.8135 4.6416 -0.6955
47 1 4.2919 5.4028 -0.1292
48 1 6.0596 -0.3356 1.0273
49 1 5.9968 -1.1186 -0.5700
50 1 6.1411 0.6515 -0.4517
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992719010.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:33:04
Heat of formation + Delta-G solvation = 29.616168 kcal
Electronic energy + Delta-G solvation = -30796.640248 eV
Core-core repulsion = 26824.107862 eV
Total energy + Delta-G solvation = -3972.532386 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.66673 -40.35099 -38.73283 -35.78982 -34.77305 -34.07082 -33.87436 -31.59848
-30.94362 -29.95058 -28.98389 -27.14373 -26.92049 -25.88229 -24.31559 -23.33502
-22.88564 -21.05950 -20.51690 -19.85093 -19.76558 -18.06365 -17.50623 -17.05416
-16.27563 -16.05329 -15.66234 -15.39187 -14.97892 -14.60316 -14.36994 -14.26580
-14.15102 -13.76832 -13.71671 -13.58549 -13.09262 -13.03461 -12.94590 -12.69919
-12.61105 -12.55415 -12.36975 -12.18798 -12.03931 -11.53787 -11.27545 -11.05208
-10.96047 -10.84863 -10.65786 -10.60140 -10.48274 -10.32837 -10.27896 -10.22905
-9.86072 -9.78794 -9.73524 -9.54617 -8.93681 -8.75668 -7.02003 -5.80463
-3.10241 0.12639 0.51198 2.41405 2.64704 3.18665 3.40972 3.45738
3.47002 3.59227 3.88380 4.03152 4.11135 4.25699 4.40463 4.52217
4.69241 4.70213 4.81679 4.92429 5.07078 5.10867 5.14530 5.24670
5.26730 5.34314 5.37753 5.42028 5.44256 5.47368 5.50041 5.59362
5.70630 5.72981 5.75031 5.79561 5.81807 5.95239 5.98690 5.99198
6.03093 6.09068 6.16226 6.32739 6.43646 6.50514 6.54437 6.78423
7.00495 7.29682 7.65261 7.87040 8.36950 8.37261 9.48817 10.04490
10.38887 11.41707
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014570 B = 0.002830 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1921.280738 B = 9891.444727 C =11113.394990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C 0.059 3.941
3 C -0.086 4.086
4 C -0.114 4.114
5 C 0.575 3.425
6 O -0.514 6.514
7 N -0.612 5.612
8 C 0.105 3.895
9 C -0.106 4.106
10 H 0.084 0.916
11 C -0.098 4.098
12 C -0.114 4.114
13 C -0.139 4.139
14 C 0.196 3.804
15 H 0.051 0.949
16 N -0.722 5.722
17 C -0.242 4.242
18 H 0.069 0.931
19 C -0.010 4.010
20 N -0.930 5.930
21 Si 0.905 3.095
22 H -0.291 1.291
23 H -0.286 1.286
24 H -0.286 1.286
25 C -0.103 4.103
26 H 0.081 0.919
27 C 0.124 3.876
28 C 0.111 3.889
29 C -0.102 4.102
30 N -0.239 5.239
31 N -0.229 5.229
32 H 0.084 0.916
33 H 0.081 0.919
34 H 0.084 0.916
35 H 0.157 0.843
36 H 0.067 0.933
37 H 0.070 0.930
38 H 0.065 0.935
39 H 0.061 0.939
40 H 0.055 0.945
41 H 0.056 0.944
42 H 0.062 0.938
43 H 0.054 0.946
44 H 0.384 0.616
45 H 0.256 0.744
46 H 0.089 0.911
47 H 0.077 0.923
48 H 0.092 0.908
49 H 0.083 0.917
50 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.988 -14.816 -1.509 22.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.086 4.086
3 C -0.115 4.115
4 C -0.129 4.129
5 C 0.361 3.639
6 O -0.390 6.390
7 N -0.346 5.346
8 C -0.018 4.018
9 C -0.125 4.125
10 H 0.102 0.898
11 C -0.136 4.136
12 C -0.152 4.152
13 C -0.180 4.180
14 C 0.086 3.914
15 H 0.069 0.931
16 N -0.362 5.362
17 C -0.374 4.374
18 H 0.087 0.913
19 C -0.206 4.206
20 N -0.578 5.578
21 Si 0.736 3.264
22 H -0.217 1.217
23 H -0.213 1.213
24 H -0.213 1.213
25 C -0.123 4.123
26 H 0.099 0.901
27 C 0.004 3.996
28 C -0.034 4.034
29 C -0.160 4.160
30 N -0.081 5.081
31 N -0.072 5.072
32 H 0.103 0.897
33 H 0.100 0.900
34 H 0.103 0.897
35 H 0.174 0.826
36 H 0.086 0.914
37 H 0.089 0.911
38 H 0.084 0.916
39 H 0.080 0.920
40 H 0.074 0.926
41 H 0.075 0.925
42 H 0.081 0.919
43 H 0.073 0.927
44 H 0.218 0.782
45 H 0.066 0.934
46 H 0.108 0.892
47 H 0.095 0.905
48 H 0.111 0.889
49 H 0.101 0.899
50 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -16.473 -16.282 -0.982 23.182
hybrid contribution 0.428 2.481 0.175 2.524
sum -16.045 -13.801 -0.807 21.179
Atomic orbital electron populations
1.20691 0.86935 1.04305 1.03846 1.22854 0.99275 0.89891 0.96572
1.22590 0.93126 1.00535 0.95241 1.21145 0.94601 0.95538 1.01605
1.17492 0.84081 0.81661 0.80688 1.90857 1.26906 1.80643 1.40601
1.49119 1.35545 1.14064 1.35827 1.22047 0.90169 0.98990 0.90581
1.21982 0.98517 0.94708 0.97290 0.89769 1.21262 1.01096 0.97605
0.93633 1.21541 0.98828 0.94406 1.00447 1.22335 0.94944 1.00914
0.99802 1.19962 0.89518 0.88693 0.93269 0.93060 1.42395 1.02045
1.09752 1.82024 1.19149 0.92524 0.86808 1.38878 0.91260 1.24733
0.95604 0.97873 1.02426 1.69638 0.98036 1.34714 1.55430 0.86308
0.76741 0.85003 0.78346 1.21711 1.21314 1.21256 1.22391 0.95212
0.99009 0.95718 0.90066 1.22079 0.99368 0.80524 0.97621 1.23038
0.99545 0.88511 0.92309 1.20780 0.86515 1.04209 1.04530 1.73025
0.98958 1.26157 1.09955 1.72801 1.01759 1.24906 1.07753 0.89695
0.90043 0.89682 0.82570 0.91439 0.91149 0.91640 0.92035 0.92581
0.92489 0.91891 0.92728 0.78179 0.93386 0.89229 0.90519 0.88932
0.89856 0.89646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.54 10.19 36.00 0.37 -0.18 16
2 C 0.06 0.55 6.86 -82.45 -0.57 -0.01 16
3 C -0.09 -0.81 8.28 -38.78 -0.32 -1.13 16
4 C -0.11 -1.39 5.42 -104.57 -0.57 -1.95 16
5 C 0.57 8.18 6.72 -12.19 -0.08 8.10 16
6 O -0.51 -9.10 15.65 5.35 0.08 -9.01 16
7 N -0.61 -7.95 3.38 -171.40 -0.58 -8.53 16
8 C 0.10 1.02 5.86 -3.02 -0.02 1.00 16
9 C -0.11 -1.12 2.34 -89.95 -0.21 -1.33 16
10 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16
11 C -0.10 -0.95 5.75 -27.08 -0.16 -1.11 16
12 C -0.11 -1.31 5.83 -26.53 -0.15 -1.46 16
13 C -0.14 -2.18 5.47 -26.54 -0.15 -2.32 16
14 C 0.20 3.42 2.51 -68.21 -0.17 3.25 16
15 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16
16 N -0.72 -16.72 5.07 -53.69 -0.27 -17.00 16
17 C -0.24 -6.38 9.95 -15.06 -0.15 -6.53 16
18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16
19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16
20 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16
21 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16
22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
25 C -0.10 -1.48 1.95 -89.90 -0.18 -1.66 16
26 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16
27 C 0.12 1.91 6.53 -2.82 -0.02 1.90 16
28 C 0.11 1.40 6.90 -82.00 -0.57 0.83 16
29 C -0.10 -1.15 9.36 36.00 0.34 -0.81 16
30 N -0.24 -3.19 11.42 33.81 0.39 -2.80 16
31 N -0.23 -2.83 11.40 33.58 0.38 -2.45 16
32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16
34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
35 H 0.16 1.07 6.27 -52.49 -0.33 0.74 16
36 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16
37 H 0.07 0.52 5.61 -51.93 -0.29 0.23 16
38 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16
39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
43 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16
44 H 0.38 9.66 7.80 -40.82 -0.32 9.34 16
45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
46 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16
47 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
49 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16
50 H 0.08 1.05 6.44 -51.93 -0.33 0.71 16
LS Contribution 396.08 15.07 5.97 5.97
Total: -1.00 -31.97 396.08 -8.98 -40.95
By element:
Atomic # 1 Polarization: 14.45 SS G_CDS: -7.96 Total: 6.49 kcal
Atomic # 6 Polarization: -1.09 SS G_CDS: -2.69 Total: -3.78 kcal
Atomic # 7 Polarization: -58.12 SS G_CDS: 0.64 Total: -57.48 kcal
Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.01 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -31.97 -8.98 -40.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992719010.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.567 kcal
(2) G-P(sol) polarization free energy of solvation -31.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.598 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds