Wall clock time and date at job start Wed Apr 1 2020 03:33:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38552 * 120.01546 * 2 1
4 4 C 1.40072 * 117.81377 * 180.26287 * 3 2 1
5 5 C 1.48141 * 121.14379 * 179.74258 * 4 3 2
6 6 O 1.21517 * 119.99966 * 135.45264 * 5 4 3
7 7 N 1.34780 * 119.99826 * 315.44804 * 5 4 3
8 8 C 1.48243 * 125.78120 * 354.71228 * 7 5 4
9 9 C 1.53112 * 106.41707 * 177.78356 * 8 7 5
10 10 H 1.08998 * 109.18224 * 271.22941 * 9 8 7
11 11 C 1.51448 * 118.46340 * 144.00755 * 9 8 7
12 12 C 1.53837 * 107.04194 * 181.10635 * 11 9 8
13 13 C 1.52535 * 111.73242 * 57.14837 * 12 11 9
14 14 C 1.53816 * 111.69736 * 306.10146 * 13 12 11
15 15 H 1.09005 * 109.94132 * 297.98074 * 14 13 12
16 16 N 1.46497 * 109.94612 * 176.81933 * 14 13 12
17 17 C 1.36941 * 120.00229 * 86.16542 * 16 14 13
18 18 H 1.07997 * 119.99425 * 0.02562 * 17 16 14
19 19 C 1.38809 * 119.99810 * 179.97438 * 17 16 14
20 20 N 1.31618 * 120.00513 * 0.02562 * 19 17 16
21 21 Si 1.86802 * 119.99530 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47084 * 180.02562 * 21 19 17
23 23 H 1.48499 * 109.47505 * 300.00241 * 21 19 17
24 24 H 1.48503 * 109.47101 * 60.00520 * 21 19 17
25 25 C 1.51621 * 107.09299 * 57.39534 * 14 13 12
26 26 H 1.08997 * 110.50237 * 55.23716 * 25 14 13
27 27 C 1.48660 * 125.78274 * 174.73186 * 7 5 4
28 28 C 1.39766 * 117.70934 * 359.46684 * 4 3 2
29 29 C 1.50697 * 120.17212 * 180.29525 * 28 4 3
30 30 N 1.31888 * 119.65559 * 0.27857 * 28 4 3
31 31 N 1.28277 * 122.33139 * 359.97438 * 30 28 4
32 32 H 1.09004 * 109.47459 * 270.27873 * 1 2 3
33 33 H 1.09001 * 109.47323 * 30.27869 * 1 2 3
34 34 H 1.09000 * 109.47532 * 150.27877 * 1 2 3
35 35 H 1.07999 * 121.09309 * 0.02562 * 3 2 1
36 36 H 1.09002 * 110.17376 * 295.93384 * 8 7 5
37 37 H 1.08994 * 110.17319 * 57.66446 * 8 7 5
38 38 H 1.09000 * 109.93924 * 300.49170 * 11 9 8
39 39 H 1.09006 * 109.93716 * 61.72134 * 11 9 8
40 40 H 1.09001 * 109.04044 * 177.76136 * 12 11 9
41 41 H 1.08997 * 109.04581 * 296.63739 * 12 11 9
42 42 H 1.09000 * 109.11505 * 185.47913 * 13 12 11
43 43 H 1.09009 * 108.96073 * 66.61791 * 13 12 11
44 44 H 0.96999 * 120.00148 * 266.16523 * 16 14 13
45 45 H 0.96991 * 119.99957 * 180.02562 * 20 19 17
46 46 H 1.08997 * 110.62474 * 37.11937 * 27 7 5
47 47 H 1.09000 * 110.62759 * 274.09548 * 27 7 5
48 48 H 1.09003 * 109.47505 * 94.08618 * 29 28 4
49 49 H 1.09008 * 109.47353 * 214.08424 * 29 28 4
50 50 H 1.08998 * 109.47365 * 334.08252 * 29 28 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2001 1.1997 0.0000
4 6 3.5997 1.1459 -0.0057
5 6 4.4140 2.3834 -0.0118
6 8 5.3776 2.4804 0.7223
7 7 4.0862 3.4018 -0.8315
8 6 3.0117 3.3810 -1.8527
9 6 2.9876 4.7758 -2.4839
10 1 2.3191 5.4172 -1.9098
11 6 2.6839 4.8935 -3.9629
12 6 2.7547 6.3882 -4.3201
13 6 4.1116 6.9894 -3.9680
14 6 4.4817 6.7350 -2.4968
15 1 3.7526 7.2125 -1.8421
16 7 5.8209 7.2606 -2.2203
17 6 5.9816 8.5740 -1.8674
18 1 5.1209 9.2221 -1.7925
19 6 7.2505 9.0718 -1.6049
20 7 8.2992 8.2818 -1.6957
21 14 7.4696 10.8636 -1.1241
22 1 8.9107 11.1431 -0.8996
23 1 6.9609 11.7344 -2.2141
24 1 6.7116 11.1377 0.1231
25 6 4.4615 5.2337 -2.2854
26 1 5.1183 4.7386 -3.0006
27 6 4.7410 4.7360 -0.8652
28 6 4.2017 -0.1155 0.0005
29 6 5.7036 -0.2380 0.0016
30 7 3.4483 -1.1980 0.0058
31 7 2.1667 -1.1420 0.0060
32 1 -0.3634 0.0050 1.0277
33 1 -0.3634 0.8875 -0.5182
34 1 -0.3634 -0.8924 -0.5095
35 1 1.6783 2.1453 0.0004
36 1 3.2397 2.6446 -2.6233
37 1 2.0539 3.1518 -1.3859
38 1 3.4234 4.3380 -4.5397
39 1 1.6849 4.5090 -4.1690
40 1 2.5798 6.5069 -5.3894
41 1 1.9780 6.9219 -3.7726
42 1 4.0830 8.0642 -4.1466
43 1 4.8733 6.5440 -4.6082
44 1 6.5938 6.6784 -2.2872
45 1 9.1858 8.6297 -1.5119
46 1 5.8135 4.6416 -0.6955
47 1 4.2919 5.4028 -0.1292
48 1 6.0596 -0.3356 1.0273
49 1 5.9968 -1.1186 -0.5700
50 1 6.1411 0.6515 -0.4517
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000992719010.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:33:03
Heat of formation + Delta-G solvation = 8.937088 kcal
Electronic energy + Delta-G solvation = -30797.536960 eV
Core-core repulsion = 26824.107862 eV
Total energy + Delta-G solvation = -3973.429098 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.56435 -41.41089 -39.88033 -37.06761 -35.69191 -35.50414 -34.77877 -33.27393
-31.96232 -30.82854 -30.40115 -28.12161 -27.92660 -26.86478 -25.70858 -24.74144
-23.78177 -22.16673 -21.65270 -21.05416 -20.77245 -19.16977 -18.93704 -18.34230
-17.28972 -16.98905 -16.77378 -16.54703 -16.32910 -15.71556 -15.57200 -15.53771
-15.16456 -14.85358 -14.83757 -14.44096 -14.39993 -14.20586 -13.88052 -13.63679
-13.52419 -13.36441 -13.33763 -13.27651 -13.08440 -12.86085 -12.79609 -12.58081
-12.24575 -12.12416 -12.01382 -11.89228 -11.75642 -11.61373 -11.48655 -11.37013
-11.24211 -10.89332 -10.81969 -10.70295 -10.57416 -9.85013 -8.97891 -7.92363
-5.20209 -0.74673 -0.28827 1.34782 1.46633 1.48865 1.54791 1.59302
2.32417 2.56606 2.80951 2.97576 3.20158 3.29332 3.37399 3.40759
3.56234 3.72304 3.75884 4.00211 4.09222 4.16329 4.21199 4.23886
4.31749 4.41538 4.47441 4.50231 4.53932 4.57494 4.66519 4.69302
4.71931 4.73913 4.77898 4.80529 4.81802 4.86610 5.00096 5.05532
5.08994 5.10484 5.28546 5.31638 5.33691 5.38282 5.42481 5.51535
5.53897 5.70973 6.24698 6.29477 6.77655 7.35532 7.52340 8.12888
8.33959 9.30922
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014570 B = 0.002830 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1921.280738 B = 9891.444727 C =11113.394990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C 0.067 3.933
3 C -0.067 4.067
4 C -0.128 4.128
5 C 0.575 3.425
6 O -0.562 6.562
7 N -0.607 5.607
8 C 0.103 3.897
9 C -0.089 4.089
10 H 0.097 0.903
11 C -0.092 4.092
12 C -0.107 4.107
13 C -0.131 4.131
14 C 0.191 3.809
15 H 0.051 0.949
16 N -0.737 5.737
17 C -0.233 4.233
18 H 0.077 0.923
19 C -0.077 4.077
20 N -0.971 5.971
21 Si 0.967 3.033
22 H -0.301 1.301
23 H -0.277 1.277
24 H -0.278 1.278
25 C -0.100 4.100
26 H 0.069 0.931
27 C 0.129 3.871
28 C 0.098 3.902
29 C -0.099 4.099
30 N -0.261 5.261
31 N -0.255 5.255
32 H 0.098 0.902
33 H 0.113 0.887
34 H 0.087 0.913
35 H 0.191 0.809
36 H 0.079 0.921
37 H 0.110 0.890
38 H 0.062 0.938
39 H 0.101 0.899
40 H 0.071 0.929
41 H 0.070 0.930
42 H 0.039 0.961
43 H 0.037 0.963
44 H 0.370 0.630
45 H 0.248 0.752
46 H 0.047 0.953
47 H 0.070 0.930
48 H 0.089 0.911
49 H 0.096 0.904
50 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.761 -15.136 -2.382 26.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.079 4.079
3 C -0.096 4.096
4 C -0.142 4.142
5 C 0.362 3.638
6 O -0.441 6.441
7 N -0.340 5.340
8 C -0.018 4.018
9 C -0.108 4.108
10 H 0.115 0.885
11 C -0.130 4.130
12 C -0.145 4.145
13 C -0.171 4.171
14 C 0.083 3.917
15 H 0.069 0.931
16 N -0.375 5.375
17 C -0.364 4.364
18 H 0.095 0.905
19 C -0.269 4.269
20 N -0.622 5.622
21 Si 0.796 3.204
22 H -0.227 1.227
23 H -0.204 1.204
24 H -0.205 1.205
25 C -0.120 4.120
26 H 0.087 0.913
27 C 0.007 3.993
28 C -0.047 4.047
29 C -0.157 4.157
30 N -0.103 5.103
31 N -0.097 5.097
32 H 0.116 0.884
33 H 0.131 0.869
34 H 0.105 0.895
35 H 0.208 0.792
36 H 0.097 0.903
37 H 0.128 0.872
38 H 0.080 0.920
39 H 0.119 0.881
40 H 0.089 0.911
41 H 0.089 0.911
42 H 0.058 0.942
43 H 0.056 0.944
44 H 0.201 0.799
45 H 0.057 0.943
46 H 0.066 0.934
47 H 0.088 0.912
48 H 0.108 0.892
49 H 0.115 0.885
50 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -21.341 -16.622 -1.895 27.117
hybrid contribution 1.801 2.565 0.436 3.164
sum -19.540 -14.057 -1.459 24.115
Atomic orbital electron populations
1.20898 0.83637 1.06018 1.05146 1.23500 1.01149 0.88843 0.94373
1.22955 0.91694 1.02050 0.92923 1.20957 0.95746 0.93944 1.03521
1.17831 0.83659 0.82274 0.79993 1.90832 1.29054 1.81558 1.42628
1.49110 1.35986 1.12720 1.36145 1.22332 0.90601 0.98657 0.90194
1.22006 0.94986 0.95207 0.98612 0.88456 1.21265 1.03284 0.96085
0.92320 1.21484 0.95728 0.95676 1.01655 1.22162 0.97598 0.99728
0.97618 1.20219 0.86582 0.90513 0.94429 0.93051 1.42642 1.03981
1.08744 1.82164 1.19559 0.92506 0.88119 1.36264 0.90478 1.25500
0.95659 1.01685 1.04076 1.69808 0.98074 1.36349 1.57984 0.85310
0.75962 0.80764 0.78343 1.22745 1.20358 1.20466 1.22190 0.98599
0.96660 0.94584 0.91274 1.21801 0.97173 0.82080 0.98226 1.23110
0.99781 0.88885 0.92950 1.20719 0.86501 1.03993 1.04457 1.72990
0.99745 1.26513 1.11019 1.72735 1.01434 1.26721 1.08780 0.88396
0.86877 0.89452 0.79170 0.90270 0.87210 0.91957 0.88088 0.91060
0.91136 0.94224 0.94377 0.79898 0.94302 0.93401 0.91190 0.89210
0.88488 0.91247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.60 10.19 71.24 0.73 0.12 16
2 C 0.07 1.02 6.86 42.63 0.29 1.31 16
3 C -0.07 -1.01 8.28 22.79 0.19 -0.82 16
4 C -0.13 -2.92 5.42 -19.83 -0.11 -3.03 16
5 C 0.57 16.34 6.72 86.87 0.58 16.92 16
6 O -0.56 -20.95 15.65 -3.77 -0.06 -21.01 16
7 N -0.61 -15.16 3.38 -814.46 -2.75 -17.91 16
8 C 0.10 1.59 5.86 86.08 0.50 2.09 16
9 C -0.09 -1.54 2.34 -10.36 -0.02 -1.57 16
10 H 0.10 1.53 7.94 -2.39 -0.02 1.51 16
11 C -0.09 -1.35 5.75 30.37 0.17 -1.17 16
12 C -0.11 -2.07 5.83 30.72 0.18 -1.89 16
13 C -0.13 -3.99 5.47 30.71 0.17 -3.82 16
14 C 0.19 6.66 2.51 44.81 0.11 6.77 16
15 H 0.05 1.80 7.94 -2.38 -0.02 1.78 16
16 N -0.74 -35.39 5.07 -323.79 -1.64 -37.03 16
17 C -0.23 -12.48 9.95 84.03 0.84 -11.65 16
18 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16
19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16
20 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16
21 Si 0.97 45.98 29.55 68.60 2.03 48.01 16
22 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16
23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
25 C -0.10 -2.84 1.95 -10.32 -0.02 -2.86 16
26 H 0.07 2.14 8.01 -2.39 -0.02 2.12 16
27 C 0.13 4.08 6.53 85.98 0.56 4.64 16
28 C 0.10 2.46 6.90 42.92 0.30 2.76 16
29 C -0.10 -2.34 9.36 71.23 0.67 -1.67 16
30 N -0.26 -6.82 11.42 -46.95 -0.54 -7.36 16
31 N -0.25 -5.82 11.40 -47.68 -0.54 -6.36 16
32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16
33 H 0.11 0.02 8.09 -2.39 -0.02 0.00 16
34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16
35 H 0.19 1.46 6.27 -2.91 -0.02 1.44 16
36 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16
37 H 0.11 0.90 5.61 -2.39 -0.01 0.89 16
38 H 0.06 1.01 8.03 -2.39 -0.02 0.99 16
39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16
40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
43 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16
44 H 0.37 19.71 7.80 -92.71 -0.72 18.98 16
45 H 0.25 15.01 8.31 -92.72 -0.77 14.24 16
46 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16
47 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
48 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16
49 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16
50 H 0.07 1.85 6.44 -2.39 -0.02 1.83 16
Total: -1.00 -75.76 396.08 2.61 -73.15
By element:
Atomic # 1 Polarization: 25.58 SS G_CDS: 0.23 Total: 25.81 kcal
Atomic # 6 Polarization: -3.39 SS G_CDS: 5.61 Total: 2.21 kcal
Atomic # 7 Polarization: -122.98 SS G_CDS: -5.19 Total: -128.18 kcal
Atomic # 8 Polarization: -20.95 SS G_CDS: -0.06 Total: -21.01 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal
Total: -75.76 2.61 -73.15 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992719010.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.083 kcal
(2) G-P(sol) polarization free energy of solvation -75.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds