Wall clock time and date at job start Wed Apr 1 2020 03:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38552 * 120.01306 * 2 1 4 4 C 1.40071 * 117.81665 * 180.25943 * 3 2 1 5 5 C 1.48130 * 121.14661 * 179.74245 * 4 3 2 6 6 O 1.21521 * 119.99593 * 135.87290 * 5 4 3 7 7 N 1.34778 * 120.00100 * 315.87191 * 5 4 3 8 8 C 1.48239 * 125.78454 * 354.69001 * 7 5 4 9 9 C 1.52327 * 105.86555 * 176.81598 * 8 7 5 10 10 H 1.08996 * 109.88696 * 272.32890 * 9 8 7 11 11 C 1.51443 * 117.44678 * 145.79658 * 9 8 7 12 12 C 1.53876 * 107.02852 * 181.58955 * 11 9 8 13 13 C 1.52525 * 112.01745 * 56.52639 * 12 11 9 14 14 C 1.53815 * 111.70216 * 306.20146 * 13 12 11 15 15 H 1.09002 * 110.01362 * 176.95196 * 14 13 12 16 16 N 1.46499 * 109.94487 * 298.15903 * 14 13 12 17 17 C 1.36937 * 120.00218 * 207.37332 * 16 14 13 18 18 H 1.08001 * 119.99594 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00059 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99727 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47329 * 90.00021 * 21 19 17 23 23 H 1.48502 * 109.47040 * 210.00318 * 21 19 17 24 24 H 1.48507 * 109.47063 * 329.99695 * 21 19 17 25 25 C 1.51621 * 107.02048 * 57.53754 * 14 13 12 26 26 H 1.08994 * 111.25752 * 55.63349 * 25 14 13 27 27 C 1.48656 * 125.78381 * 174.69172 * 7 5 4 28 28 C 1.39771 * 117.70410 * 359.47979 * 4 3 2 29 29 C 1.50705 * 120.17067 * 180.28972 * 28 4 3 30 30 N 1.31890 * 119.65926 * 0.26717 * 28 4 3 31 31 N 1.28286 * 122.32840 * 359.97438 * 30 28 4 32 32 H 1.09001 * 109.47201 * 270.27479 * 1 2 3 33 33 H 1.08996 * 109.47481 * 30.28042 * 1 2 3 34 34 H 1.08998 * 109.47189 * 150.27764 * 1 2 3 35 35 H 1.08001 * 121.08775 * 0.02562 * 3 2 1 36 36 H 1.09004 * 110.17140 * 295.91774 * 8 7 5 37 37 H 1.09000 * 110.16696 * 57.64086 * 8 7 5 38 38 H 1.08994 * 109.94081 * 300.62014 * 11 9 8 39 39 H 1.09001 * 109.94184 * 61.85640 * 11 9 8 40 40 H 1.08999 * 108.66328 * 295.99265 * 12 11 9 41 41 H 1.08997 * 109.05681 * 177.32925 * 12 11 9 42 42 H 1.08999 * 109.03783 * 185.62824 * 13 12 11 43 43 H 1.09007 * 108.97679 * 66.73258 * 13 12 11 44 44 H 0.96999 * 119.99649 * 27.37895 * 16 14 13 45 45 H 0.97000 * 119.99572 * 180.02562 * 20 19 17 46 46 H 1.09007 * 110.62743 * 274.11039 * 27 7 5 47 47 H 1.09003 * 110.62595 * 37.12891 * 27 7 5 48 48 H 1.09003 * 109.46471 * 84.46378 * 29 28 4 49 49 H 1.08997 * 109.47085 * 204.46281 * 29 28 4 50 50 H 1.08995 * 109.46976 * 324.46596 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5997 1.1461 -0.0056 5 6 4.4139 2.3835 -0.0117 6 8 5.3819 2.4775 0.7169 7 7 4.0811 3.4052 -0.8253 8 6 3.0008 3.3885 -1.8403 9 6 2.9677 4.7899 -2.4363 10 1 2.3156 5.4302 -1.8423 11 6 2.6155 4.9162 -3.9038 12 6 2.6919 6.4116 -4.2585 13 6 4.0597 7.0059 -3.9389 14 6 4.4657 6.7458 -2.4783 15 1 5.4677 7.1338 -2.2948 16 7 3.5087 7.3856 -1.5721 17 6 3.9080 7.7828 -0.3240 18 1 4.9283 7.6240 -0.0074 19 6 3.0011 8.3886 0.5348 20 7 1.7572 8.5807 0.1495 21 14 3.5458 8.9310 2.2372 22 1 4.0427 10.3291 2.1759 23 1 2.3951 8.8552 3.1727 24 1 4.6328 8.0399 2.7165 25 6 4.4473 5.2436 -2.2733 26 1 5.0870 4.7382 -2.9966 27 6 4.7352 4.7398 -0.8570 28 6 4.2017 -0.1154 0.0004 29 6 5.7037 -0.2379 0.0014 30 7 3.4484 -1.1980 0.0057 31 7 2.1667 -1.1419 0.0059 32 1 -0.3634 0.0049 1.0277 33 1 -0.3634 0.8874 -0.5182 34 1 -0.3633 -0.8924 -0.5095 35 1 1.6781 2.1453 0.0004 36 1 3.2246 2.6555 -2.6154 37 1 2.0458 3.1567 -1.3688 38 1 3.3321 4.3592 -4.5073 39 1 1.6081 4.5383 -4.0782 40 1 1.9307 6.9445 -3.6888 41 1 2.4899 6.5357 -5.3224 42 1 4.0297 8.0814 -4.1134 43 1 4.8033 6.5595 -4.5994 44 1 2.5923 7.5278 -1.8564 45 1 1.1236 9.0043 0.7494 46 1 4.2901 5.4033 -0.1154 47 1 5.8088 4.6452 -0.6938 48 1 6.0735 -0.1638 1.0241 49 1 5.9899 -1.2016 -0.4196 50 1 6.1339 0.5633 -0.5994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992719021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:07 Heat of formation + Delta-G solvation = 33.083801 kcal Electronic energy + Delta-G solvation = -31551.847641 eV Core-core repulsion = 27579.465623 eV Total energy + Delta-G solvation = -3972.382018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51516 -40.23661 -38.62810 -35.68694 -34.63598 -33.76056 -33.72395 -31.49200 -30.80702 -29.82390 -28.94539 -27.03735 -27.02120 -25.69500 -24.19163 -23.35044 -22.72689 -20.99370 -20.91930 -19.61770 -18.83180 -17.90432 -17.26353 -17.15899 -16.15597 -15.88374 -15.52358 -15.23430 -14.85915 -14.56736 -14.41133 -14.12861 -13.96617 -13.68996 -13.64113 -13.46810 -13.06571 -12.82032 -12.70484 -12.59646 -12.52579 -12.40979 -12.29520 -11.99638 -11.68999 -11.48609 -11.25490 -11.15119 -10.94546 -10.83365 -10.51505 -10.46159 -10.36784 -10.32508 -10.19152 -9.98157 -9.65521 -9.61782 -9.58388 -9.48430 -8.99047 -8.46165 -7.08284 -5.88591 -3.16751 0.27420 0.64719 2.60303 2.88069 3.32897 3.37502 3.44492 3.45497 3.72339 4.08632 4.17587 4.27749 4.49757 4.52221 4.67348 4.83584 4.94655 5.01534 5.09464 5.24568 5.26556 5.29511 5.40911 5.44469 5.48792 5.49684 5.52491 5.55552 5.59154 5.68622 5.72105 5.81681 5.85188 5.89412 5.93112 5.93941 6.01040 6.06310 6.15481 6.22019 6.26640 6.34459 6.52183 6.55755 6.64628 6.76560 6.77459 6.98270 7.53979 7.61388 8.06786 8.30327 8.49275 9.42664 9.98516 10.33577 11.33330 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.003691 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.635606 B = 7585.003210 C = 8306.691751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.060 3.940 3 C -0.084 4.084 4 C -0.114 4.114 5 C 0.573 3.427 6 O -0.525 6.525 7 N -0.605 5.605 8 C 0.108 3.892 9 C -0.107 4.107 10 H 0.107 0.893 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.121 4.121 14 C 0.189 3.811 15 H 0.055 0.945 16 N -0.716 5.716 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.007 4.007 20 N -0.930 5.930 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C -0.118 4.118 26 H 0.066 0.934 27 C 0.115 3.885 28 C 0.107 3.893 29 C -0.097 4.097 30 N -0.242 5.242 31 N -0.232 5.232 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -13.331 -7.832 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.128 4.128 5 C 0.359 3.641 6 O -0.402 6.402 7 N -0.338 5.338 8 C -0.015 4.015 9 C -0.126 4.126 10 H 0.125 0.875 11 C -0.135 4.135 12 C -0.152 4.152 13 C -0.160 4.160 14 C 0.078 3.922 15 H 0.073 0.927 16 N -0.357 5.357 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.731 3.269 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.141 4.141 26 H 0.084 0.916 27 C -0.005 4.005 28 C -0.038 4.038 29 C -0.156 4.156 30 N -0.083 5.083 31 N -0.075 5.075 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.177 0.823 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.091 -14.923 -7.218 16.577 hybrid contribution -0.152 1.946 0.948 2.170 sum -0.061 -12.977 -6.270 14.413 Atomic orbital electron populations 1.20700 0.86919 1.04311 1.03907 1.22853 0.99289 0.89854 0.96405 1.22677 0.93255 1.00706 0.94717 1.21169 0.94636 0.95607 1.01373 1.17481 0.84168 0.81767 0.80706 1.90807 1.27217 1.81133 1.41072 1.49164 1.34954 1.13771 1.35911 1.21924 0.89980 0.99099 0.90461 1.21875 0.99313 0.94424 0.97019 0.87512 1.21248 1.00677 0.97011 0.94581 1.21452 0.98491 0.95020 1.00209 1.21794 0.96403 1.00768 0.97027 1.19889 0.94452 0.88882 0.88999 0.92688 1.42453 1.09782 1.70108 1.13397 1.19213 0.95448 1.31980 0.90578 0.91070 1.24685 0.95742 1.01485 0.98459 1.69644 1.03056 1.48658 1.36379 0.86304 0.77446 0.78701 0.84494 1.21656 1.21844 1.20620 1.22846 0.95467 1.00639 0.95116 0.91600 1.22358 0.97655 0.80986 0.99474 1.22995 0.99420 0.88589 0.92761 1.20712 0.86694 1.03644 1.04516 1.73002 0.99028 1.26170 1.10148 1.72778 1.01717 1.24930 1.08033 0.89659 0.89906 0.89754 0.82348 0.92033 0.91512 0.92463 0.92157 0.91408 0.92781 0.91747 0.92780 0.77968 0.93482 0.87434 0.91313 0.88941 0.90050 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.19 36.01 0.37 -0.41 16 2 C 0.06 0.70 6.86 -82.45 -0.57 0.13 16 3 C -0.08 -1.02 8.28 -38.78 -0.32 -1.34 16 4 C -0.11 -1.60 5.43 -104.58 -0.57 -2.17 16 5 C 0.57 9.30 6.76 -12.20 -0.08 9.22 16 6 O -0.53 -9.98 15.84 5.35 0.08 -9.89 16 7 N -0.61 -9.39 3.38 -171.87 -0.58 -9.97 16 8 C 0.11 1.39 5.79 -3.43 -0.02 1.37 16 9 C -0.11 -1.51 2.20 -90.36 -0.20 -1.71 16 10 H 0.11 1.87 6.60 -51.93 -0.34 1.52 16 11 C -0.10 -1.15 5.74 -27.06 -0.16 -1.31 16 12 C -0.11 -1.48 5.57 -26.52 -0.15 -1.63 16 13 C -0.12 -1.71 5.52 -26.55 -0.15 -1.86 16 14 C 0.19 3.20 3.01 -68.21 -0.21 3.00 16 15 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 16 N -0.72 -15.28 3.83 -53.69 -0.21 -15.48 16 17 C -0.24 -5.96 8.00 -15.06 -0.12 -6.08 16 18 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -25.84 13.06 55.49 0.72 -25.11 16 21 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.12 -1.80 2.35 -89.90 -0.21 -2.01 16 26 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 27 C 0.12 1.99 6.45 -2.82 -0.02 1.97 16 28 C 0.11 1.49 6.90 -81.99 -0.57 0.93 16 29 C -0.10 -1.16 9.02 36.01 0.32 -0.83 16 30 N -0.24 -3.53 11.42 33.81 0.39 -3.15 16 31 N -0.23 -3.23 11.40 33.58 0.38 -2.84 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.16 1.68 6.23 -52.49 -0.33 1.36 16 36 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.07 0.78 5.58 -51.93 -0.29 0.49 16 38 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.02 7.03 -51.93 -0.36 0.65 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.39 8.80 6.02 -40.82 -0.25 8.55 16 45 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.11 2.23 6.06 -51.93 -0.31 1.92 16 47 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 0.99 7.05 -51.93 -0.37 0.63 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -29.71 387.60 -8.81 -38.52 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.69 Total: 8.68 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.73 Total: -3.01 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.71 Total: -56.55 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.71 -8.81 -38.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.602 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds