Wall clock time and date at job start Wed Apr 1 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38552 * 120.01306 * 2 1 4 4 C 1.40071 * 117.81665 * 180.25943 * 3 2 1 5 5 C 1.48130 * 121.14661 * 179.74245 * 4 3 2 6 6 O 1.21521 * 119.99593 * 135.87290 * 5 4 3 7 7 N 1.34778 * 120.00100 * 315.87191 * 5 4 3 8 8 C 1.48239 * 125.78454 * 354.69001 * 7 5 4 9 9 C 1.52327 * 105.86555 * 176.81598 * 8 7 5 10 10 H 1.08996 * 109.88696 * 272.32890 * 9 8 7 11 11 C 1.51443 * 117.44678 * 145.79658 * 9 8 7 12 12 C 1.53876 * 107.02852 * 181.58955 * 11 9 8 13 13 C 1.52525 * 112.01745 * 56.52639 * 12 11 9 14 14 C 1.53815 * 111.70216 * 306.20146 * 13 12 11 15 15 H 1.09002 * 110.01362 * 176.95196 * 14 13 12 16 16 N 1.46499 * 109.94487 * 298.15903 * 14 13 12 17 17 C 1.36937 * 120.00218 * 207.37332 * 16 14 13 18 18 H 1.08001 * 119.99594 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00059 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99727 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47329 * 90.00021 * 21 19 17 23 23 H 1.48502 * 109.47040 * 210.00318 * 21 19 17 24 24 H 1.48507 * 109.47063 * 329.99695 * 21 19 17 25 25 C 1.51621 * 107.02048 * 57.53754 * 14 13 12 26 26 H 1.08994 * 111.25752 * 55.63349 * 25 14 13 27 27 C 1.48656 * 125.78381 * 174.69172 * 7 5 4 28 28 C 1.39771 * 117.70410 * 359.47979 * 4 3 2 29 29 C 1.50705 * 120.17067 * 180.28972 * 28 4 3 30 30 N 1.31890 * 119.65926 * 0.26717 * 28 4 3 31 31 N 1.28286 * 122.32840 * 359.97438 * 30 28 4 32 32 H 1.09001 * 109.47201 * 270.27479 * 1 2 3 33 33 H 1.08996 * 109.47481 * 30.28042 * 1 2 3 34 34 H 1.08998 * 109.47189 * 150.27764 * 1 2 3 35 35 H 1.08001 * 121.08775 * 0.02562 * 3 2 1 36 36 H 1.09004 * 110.17140 * 295.91774 * 8 7 5 37 37 H 1.09000 * 110.16696 * 57.64086 * 8 7 5 38 38 H 1.08994 * 109.94081 * 300.62014 * 11 9 8 39 39 H 1.09001 * 109.94184 * 61.85640 * 11 9 8 40 40 H 1.08999 * 108.66328 * 295.99265 * 12 11 9 41 41 H 1.08997 * 109.05681 * 177.32925 * 12 11 9 42 42 H 1.08999 * 109.03783 * 185.62824 * 13 12 11 43 43 H 1.09007 * 108.97679 * 66.73258 * 13 12 11 44 44 H 0.96999 * 119.99649 * 27.37895 * 16 14 13 45 45 H 0.97000 * 119.99572 * 180.02562 * 20 19 17 46 46 H 1.09007 * 110.62743 * 274.11039 * 27 7 5 47 47 H 1.09003 * 110.62595 * 37.12891 * 27 7 5 48 48 H 1.09003 * 109.46471 * 84.46378 * 29 28 4 49 49 H 1.08997 * 109.47085 * 204.46281 * 29 28 4 50 50 H 1.08995 * 109.46976 * 324.46596 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5997 1.1461 -0.0056 5 6 4.4139 2.3835 -0.0117 6 8 5.3819 2.4775 0.7169 7 7 4.0811 3.4052 -0.8253 8 6 3.0008 3.3885 -1.8403 9 6 2.9677 4.7899 -2.4363 10 1 2.3156 5.4302 -1.8423 11 6 2.6155 4.9162 -3.9038 12 6 2.6919 6.4116 -4.2585 13 6 4.0597 7.0059 -3.9389 14 6 4.4657 6.7458 -2.4783 15 1 5.4677 7.1338 -2.2948 16 7 3.5087 7.3856 -1.5721 17 6 3.9080 7.7828 -0.3240 18 1 4.9283 7.6240 -0.0074 19 6 3.0011 8.3886 0.5348 20 7 1.7572 8.5807 0.1495 21 14 3.5458 8.9310 2.2372 22 1 4.0427 10.3291 2.1759 23 1 2.3951 8.8552 3.1727 24 1 4.6328 8.0399 2.7165 25 6 4.4473 5.2436 -2.2733 26 1 5.0870 4.7382 -2.9966 27 6 4.7352 4.7398 -0.8570 28 6 4.2017 -0.1154 0.0004 29 6 5.7037 -0.2379 0.0014 30 7 3.4484 -1.1980 0.0057 31 7 2.1667 -1.1419 0.0059 32 1 -0.3634 0.0049 1.0277 33 1 -0.3634 0.8874 -0.5182 34 1 -0.3633 -0.8924 -0.5095 35 1 1.6781 2.1453 0.0004 36 1 3.2246 2.6555 -2.6154 37 1 2.0458 3.1567 -1.3688 38 1 3.3321 4.3592 -4.5073 39 1 1.6081 4.5383 -4.0782 40 1 1.9307 6.9445 -3.6888 41 1 2.4899 6.5357 -5.3224 42 1 4.0297 8.0814 -4.1134 43 1 4.8033 6.5595 -4.5994 44 1 2.5923 7.5278 -1.8564 45 1 1.1236 9.0043 0.7494 46 1 4.2901 5.4033 -0.1154 47 1 5.8088 4.6452 -0.6938 48 1 6.0735 -0.1638 1.0241 49 1 5.9899 -1.2016 -0.4196 50 1 6.1339 0.5633 -0.5994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992719021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:06 Heat of formation + Delta-G solvation = 15.483208 kcal Electronic energy + Delta-G solvation = -31552.610860 eV Core-core repulsion = 27579.465623 eV Total energy + Delta-G solvation = -3973.145237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57068 -41.44739 -39.90236 -37.00407 -35.60296 -35.35433 -34.78472 -33.08057 -31.91071 -30.87976 -30.39914 -28.30424 -27.93959 -26.79665 -25.65581 -24.79212 -23.78005 -22.18594 -22.07106 -20.81894 -20.13323 -19.11572 -18.94195 -18.34860 -17.27041 -17.00742 -16.70710 -16.49840 -16.33006 -15.86437 -15.63226 -15.51279 -15.24106 -14.89075 -14.56982 -14.48834 -14.41441 -14.05542 -13.78369 -13.63979 -13.48959 -13.38825 -13.21291 -13.16751 -13.10971 -12.86082 -12.70377 -12.65983 -12.40706 -12.15660 -12.12838 -11.80545 -11.68216 -11.58344 -11.43208 -11.29978 -11.09883 -10.88349 -10.71791 -10.60641 -10.57724 -9.76160 -8.92561 -7.91103 -5.14451 -0.78047 -0.31916 1.38510 1.43894 1.47201 1.52128 1.66092 2.30091 2.56620 2.79542 3.00385 3.18887 3.32201 3.39061 3.47822 3.63253 3.80259 3.85977 3.97942 4.09151 4.19726 4.28719 4.29467 4.37811 4.39235 4.48302 4.55438 4.62561 4.65043 4.69349 4.70422 4.72078 4.72948 4.75223 4.82896 4.94308 5.01350 5.06269 5.07989 5.10301 5.13659 5.25081 5.25749 5.40808 5.43722 5.51541 5.56411 5.59699 5.75925 6.30830 6.32936 6.79886 7.41196 7.48677 8.18358 8.42052 9.31708 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.003691 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.635606 B = 7585.003210 C = 8306.691751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.068 3.932 3 C -0.075 4.075 4 C -0.126 4.126 5 C 0.573 3.427 6 O -0.562 6.562 7 N -0.604 5.604 8 C 0.108 3.892 9 C -0.097 4.097 10 H 0.069 0.931 11 C -0.089 4.089 12 C -0.112 4.112 13 C -0.115 4.115 14 C 0.181 3.819 15 H 0.044 0.956 16 N -0.720 5.720 17 C -0.219 4.219 18 H 0.068 0.932 19 C -0.063 4.063 20 N -0.961 5.961 21 Si 0.946 3.054 22 H -0.290 1.290 23 H -0.300 1.300 24 H -0.281 1.281 25 C -0.110 4.110 26 H 0.092 0.908 27 C 0.117 3.883 28 C 0.101 3.899 29 C -0.094 4.094 30 N -0.259 5.259 31 N -0.251 5.251 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.174 0.826 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.378 0.622 45 H 0.248 0.752 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 -14.965 -9.971 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.360 3.640 6 O -0.441 6.441 7 N -0.336 5.336 8 C -0.013 4.013 9 C -0.116 4.116 10 H 0.087 0.913 11 C -0.127 4.127 12 C -0.149 4.149 13 C -0.153 4.153 14 C 0.072 3.928 15 H 0.062 0.938 16 N -0.361 5.361 17 C -0.352 4.352 18 H 0.086 0.914 19 C -0.256 4.256 20 N -0.612 5.612 21 Si 0.778 3.222 22 H -0.217 1.217 23 H -0.227 1.227 24 H -0.206 1.206 25 C -0.131 4.131 26 H 0.110 0.890 27 C -0.004 4.004 28 C -0.045 4.045 29 C -0.152 4.152 30 N -0.100 5.100 31 N -0.093 5.093 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.192 0.808 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.212 0.788 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.118 0.882 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.510 -16.589 -9.396 19.072 hybrid contribution 0.079 2.428 1.587 2.901 sum -0.431 -14.161 -7.809 16.177 Atomic orbital electron populations 1.20877 0.83998 1.05845 1.05064 1.23388 1.00982 0.88780 0.94573 1.22892 0.92422 1.01689 0.93476 1.21023 0.95346 0.94561 1.03114 1.17787 0.83868 0.82351 0.79992 1.90781 1.28926 1.81948 1.42491 1.49184 1.35351 1.12824 1.36265 1.22101 0.89847 0.98959 0.90440 1.21759 0.97280 0.94226 0.98383 0.91276 1.21239 1.02497 0.96291 0.92641 1.21436 0.96635 0.95555 1.01311 1.21722 0.98118 1.00507 0.94956 1.20127 0.92876 0.89621 0.90223 0.93812 1.42539 1.10235 1.70327 1.12983 1.19427 0.94887 1.29243 0.91612 0.91392 1.25177 0.96107 1.03387 1.00958 1.69750 1.03739 1.50780 1.36922 0.85541 0.76587 0.78161 0.81931 1.21748 1.22694 1.20614 1.22672 0.97124 0.99133 0.94214 0.89007 1.22090 0.96880 0.81611 0.99810 1.23189 1.00125 0.88412 0.92748 1.20705 0.85767 1.04401 1.04292 1.72974 0.99591 1.26499 1.10929 1.72729 1.01612 1.26211 1.08779 0.88513 0.87710 0.88905 0.80827 0.89451 0.90032 0.90117 0.90275 0.94191 0.90222 0.93003 0.89809 0.78823 0.94335 0.91514 0.92159 0.89351 0.88250 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.19 71.24 0.73 -0.50 16 2 C 0.07 1.41 6.86 42.63 0.29 1.70 16 3 C -0.08 -1.66 8.28 22.79 0.19 -1.47 16 4 C -0.13 -3.42 5.43 -19.83 -0.11 -3.53 16 5 C 0.57 18.37 6.76 86.87 0.59 18.96 16 6 O -0.56 -21.73 15.84 -3.78 -0.06 -21.79 16 7 N -0.60 -18.19 3.38 -815.96 -2.76 -20.95 16 8 C 0.11 2.50 5.79 85.82 0.50 2.99 16 9 C -0.10 -2.53 2.20 -10.63 -0.02 -2.55 16 10 H 0.07 2.38 6.60 -2.39 -0.02 2.37 16 11 C -0.09 -1.76 5.74 30.38 0.17 -1.58 16 12 C -0.11 -2.59 5.57 30.73 0.17 -2.42 16 13 C -0.11 -2.98 5.52 30.71 0.17 -2.81 16 14 C 0.18 6.00 3.01 44.81 0.13 6.14 16 15 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 16 N -0.72 -31.23 3.83 -323.79 -1.24 -32.47 16 17 C -0.22 -11.10 8.00 84.03 0.67 -10.42 16 18 H 0.07 3.43 7.82 -2.91 -0.02 3.40 16 19 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 20 N -0.96 -54.92 13.06 21.65 0.28 -54.64 16 21 Si 0.95 45.30 29.55 68.60 2.03 47.33 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 C -0.11 -3.16 2.35 -10.33 -0.02 -3.19 16 26 H 0.09 2.25 8.06 -2.39 -0.02 2.23 16 27 C 0.12 4.06 6.45 85.98 0.55 4.61 16 28 C 0.10 2.72 6.90 42.92 0.30 3.01 16 29 C -0.09 -2.18 9.02 71.24 0.64 -1.54 16 30 N -0.26 -7.28 11.42 -46.93 -0.54 -7.82 16 31 N -0.25 -6.57 11.40 -47.68 -0.54 -7.12 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.17 3.23 6.23 -2.91 -0.02 3.21 16 36 H 0.09 1.65 8.08 -2.38 -0.02 1.64 16 37 H 0.08 1.67 5.58 -2.39 -0.01 1.66 16 38 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.16 7.03 -2.39 -0.02 1.14 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.38 17.66 6.02 -92.71 -0.56 17.11 16 45 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.07 2.87 6.06 -2.38 -0.01 2.86 16 47 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 50 H 0.07 1.83 7.05 -2.39 -0.02 1.81 16 Total: -1.00 -67.16 387.60 2.99 -64.16 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.40 Total: 28.87 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.42 Total: 4.44 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -4.79 Total: -123.00 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.06 Total: -21.79 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.16 2.99 -64.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.646 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds