Wall clock time and date at job start Wed Apr 1 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46753 * 240.00037 * 3 2 1 5 5 H 1.48506 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47387 * 119.99769 * 3 2 1 7 7 C 1.38810 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00564 * 179.97438 * 9 7 2 11 11 H 1.09002 * 108.17262 * 32.13034 * 10 9 7 12 12 C 1.51494 * 108.27674 * 275.00046 * 10 9 7 13 13 C 1.52672 * 110.81451 * 191.85410 * 12 10 9 14 14 C 1.52845 * 108.58004 * 60.04407 * 13 12 10 15 15 C 1.52900 * 109.68723 * 294.87886 * 14 13 12 16 16 H 1.09002 * 111.17141 * 289.44441 * 15 14 13 17 17 C 1.54799 * 107.41758 * 167.41714 * 15 14 13 18 18 N 1.46938 * 107.28274 * 262.33228 * 17 15 14 19 19 C 1.34772 * 125.40387 * 178.40396 * 18 17 15 20 20 O 1.21580 * 120.00140 * 180.02562 * 19 18 17 21 21 C 1.47713 * 120.00323 * 0.03823 * 19 18 17 22 22 C 1.41499 * 126.52046 * 179.97438 * 21 19 18 23 23 C 1.35363 * 105.50515 * 180.02562 * 22 21 19 24 24 C 1.50700 * 126.38759 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.50089 * 213.61859 * 24 23 22 26 26 C 1.52994 * 60.00315 * 252.51218 * 25 24 23 27 27 N 1.35035 * 107.22570 * 359.97438 * 23 22 21 28 28 H 0.97003 * 124.88208 * 180.02562 * 27 23 22 29 29 N 1.28463 * 110.23203 * 359.72400 * 27 23 22 30 30 C 1.47231 * 109.19038 * 358.43750 * 18 17 15 31 31 C 1.50162 * 108.19731 * 148.40810 * 10 9 7 32 32 H 1.08995 * 108.27337 * 280.02914 * 31 10 9 33 33 H 0.96994 * 120.00457 * 0.02562 * 1 2 3 34 34 H 0.97000 * 119.99769 * 359.97438 * 9 7 2 35 35 H 1.09001 * 109.20904 * 71.51383 * 12 10 9 36 36 H 1.08993 * 109.21263 * 312.20002 * 12 10 9 37 37 H 1.09002 * 109.62262 * 300.31672 * 13 12 10 38 38 H 1.09004 * 109.76760 * 179.86205 * 13 12 10 39 39 H 1.08999 * 109.43561 * 174.80397 * 14 13 12 40 40 H 1.09007 * 109.39319 * 54.91647 * 14 13 12 41 41 H 1.08995 * 109.88311 * 142.90427 * 17 15 14 42 42 H 1.09004 * 109.87653 * 21.74850 * 17 15 14 43 43 H 1.08004 * 127.24833 * 359.97438 * 22 21 19 44 44 H 1.09007 * 115.54921 * 359.33015 * 24 23 22 45 45 H 1.09000 * 117.49603 * 0.02562 * 25 24 23 46 46 H 1.08999 * 117.50087 * 145.02035 * 25 24 23 47 47 H 1.09004 * 117.49787 * 252.51264 * 26 25 24 48 48 H 1.08993 * 117.50328 * 107.48596 * 26 25 24 49 49 H 1.09002 * 110.24231 * 100.45927 * 30 18 17 50 50 H 1.08998 * 110.24289 * 222.36280 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9877 -3.5127 0.5513 12 6 2.4043 -4.0055 -1.4325 13 6 2.9054 -5.4440 -1.5349 14 6 1.8025 -6.3802 -1.0416 15 6 1.5498 -6.1390 0.4470 16 1 2.3829 -6.4986 1.0510 17 6 0.2325 -6.8632 0.8167 18 7 -0.8400 -5.8591 0.7897 19 6 -2.1441 -6.1031 1.0267 20 8 -2.9511 -5.1951 0.9778 21 6 -2.5929 -7.4737 1.3461 22 6 -3.9198 -7.8834 1.6177 23 6 -3.8465 -9.2143 1.8533 24 6 -4.9969 -10.1269 2.1924 25 6 -4.7163 -11.2953 3.1395 26 6 -4.9481 -11.5567 1.6500 27 7 -2.5505 -9.5719 1.7278 28 1 -2.2097 -10.4726 1.8439 29 7 -1.8345 -8.5487 1.4265 30 6 -0.2640 -4.5444 0.4619 31 6 1.2403 -4.6704 0.7478 32 1 1.3894 -4.5098 1.8155 33 1 -0.4850 0.8400 -0.0004 34 1 0.3557 -2.3881 0.0005 35 1 3.1812 -3.3290 -1.7886 36 1 1.5166 -3.8899 -2.0542 37 1 3.7939 -5.5671 -0.9157 38 1 3.1468 -5.6774 -2.5719 39 1 2.1096 -7.4148 -1.1945 40 1 0.8869 -6.1871 -1.6007 41 1 0.3132 -7.2927 1.8152 42 1 0.0241 -7.6477 0.0892 43 1 -4.8047 -7.2643 1.6343 44 1 -5.9734 -9.6472 2.2599 45 1 -3.6998 -11.4036 3.5176 46 1 -5.5082 -11.5845 3.8304 47 1 -5.8925 -12.0178 1.3609 48 1 -4.0840 -11.8372 1.0478 49 1 -0.4298 -4.3117 -0.5900 50 1 -0.7043 -3.7720 1.0924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992820228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:17 Heat of formation + Delta-G solvation = 77.531384 kcal Electronic energy + Delta-G solvation = -30472.216357 eV Core-core repulsion = 26501.761731 eV Total energy + Delta-G solvation = -3970.454626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.93592 -40.26444 -38.31709 -37.61612 -35.42212 -33.90845 -32.13101 -31.55254 -31.09299 -30.24870 -28.70470 -26.70140 -25.21519 -23.94666 -23.54558 -22.98808 -22.49980 -21.48479 -21.30763 -20.73036 -18.86291 -18.21791 -18.05967 -17.15957 -16.62648 -16.15637 -15.92100 -15.56753 -15.24387 -14.75360 -14.53774 -14.40519 -13.80213 -13.70706 -13.67831 -13.52199 -13.12916 -12.75283 -12.65060 -12.60697 -12.38619 -12.20552 -11.85800 -11.77061 -11.57025 -11.31099 -11.09925 -10.93789 -10.90182 -10.83957 -10.73237 -10.68627 -10.20503 -10.11459 -9.92502 -9.77071 -9.57540 -9.53568 -9.45831 -9.03230 -8.80618 -8.30962 -6.89880 -5.68337 -2.98138 1.45154 1.84708 2.55056 3.18518 3.36095 3.48707 3.52921 3.53603 3.54482 3.93127 4.19162 4.28023 4.36657 4.59470 4.63371 4.70786 4.83788 4.96236 5.01408 5.09006 5.26052 5.37886 5.42036 5.44659 5.45428 5.49715 5.55268 5.62103 5.68777 5.70960 5.77946 5.87886 5.90944 5.91770 6.08143 6.15666 6.17363 6.24045 6.36636 6.43068 6.48857 6.53341 6.60360 6.69443 6.74384 6.81780 6.98608 7.22796 7.61609 7.75920 7.76938 8.37562 8.49448 9.60187 10.17123 10.51286 11.53857 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.002465 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.225329 B =11355.302481 C =12574.269269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.190 3.810 11 H 0.045 0.955 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.089 0.911 17 C 0.114 3.886 18 N -0.602 5.602 19 C 0.608 3.392 20 O -0.527 6.527 21 C 0.002 3.998 22 C -0.169 4.169 23 C 0.043 3.957 24 C -0.085 4.085 25 C -0.174 4.174 26 C -0.174 4.174 27 N -0.385 5.385 28 H 0.441 0.559 29 N -0.252 5.252 30 C 0.119 3.881 31 C -0.088 4.088 32 H 0.071 0.929 33 H 0.256 0.744 34 H 0.385 0.615 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.164 0.836 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -27.808 3.611 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.080 3.920 11 H 0.064 0.936 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.146 4.146 15 C -0.110 4.110 16 H 0.107 0.893 17 C -0.009 4.009 18 N -0.335 5.335 19 C 0.394 3.606 20 O -0.402 6.402 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.083 4.083 24 C -0.105 4.105 25 C -0.212 4.212 26 C -0.211 4.211 27 N -0.099 5.099 28 H 0.285 0.715 29 N -0.087 5.087 30 C -0.003 4.003 31 C -0.108 4.108 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.221 0.779 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.488 -27.420 3.510 28.006 hybrid contribution -0.443 0.677 0.144 0.822 sum -4.931 -26.743 3.654 27.438 Atomic orbital electron populations 1.69650 1.05021 1.25772 1.57401 1.24742 0.95470 0.97598 1.03082 0.86306 0.78506 0.83838 0.77729 1.21376 1.21771 1.21368 1.19184 0.90881 0.84153 1.42917 0.91290 1.42679 1.05918 0.99650 1.88944 1.19142 0.94242 0.85764 0.92807 0.93646 1.21863 1.01053 0.94124 0.99846 1.21445 0.97755 0.96262 1.00056 1.21545 0.99549 0.98742 0.94785 1.21952 0.96292 0.95437 0.97310 0.89285 1.22275 0.86132 0.90939 1.01570 1.48241 1.05900 1.11115 1.68219 1.16486 0.81106 0.85398 0.77596 1.90848 1.52529 1.44328 1.52475 1.21946 0.92288 0.93143 1.08492 1.21457 0.97906 0.93043 1.07229 1.20412 0.85891 0.94868 1.07087 1.20525 0.96467 0.88319 1.05173 1.23092 1.03469 1.01361 0.93247 1.23095 1.04183 0.97335 0.96530 1.43248 1.04928 1.10210 1.51491 0.71548 1.73717 1.23071 0.94160 1.17800 1.22005 0.92804 0.83813 1.01667 1.21332 0.94225 0.93762 1.01465 0.91023 0.93421 0.77911 0.92160 0.92418 0.92372 0.92726 0.92434 0.91920 0.91582 0.90942 0.81875 0.84860 0.88810 0.87538 0.87541 0.88799 0.90975 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.67 9.86 -15.06 -0.15 -6.81 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -18.19 4.90 -55.56 -0.27 -18.46 16 10 C 0.19 3.71 2.55 -70.10 -0.18 3.53 16 11 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 12 C -0.13 -2.27 5.41 -27.66 -0.15 -2.42 16 13 C -0.12 -1.58 5.94 -26.98 -0.16 -1.74 16 14 C -0.11 -1.37 4.80 -26.86 -0.13 -1.50 16 15 C -0.09 -1.18 3.28 -89.69 -0.29 -1.48 16 16 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 17 C 0.11 1.51 5.00 -2.86 -0.01 1.50 16 18 N -0.60 -10.03 3.33 -172.40 -0.57 -10.60 16 19 C 0.61 10.87 7.85 -12.39 -0.10 10.77 16 20 O -0.53 -11.30 17.22 5.30 0.09 -11.21 16 21 C 0.00 0.03 6.97 -82.76 -0.58 -0.54 16 22 C -0.17 -2.06 10.73 -39.37 -0.42 -2.49 16 23 C 0.04 0.38 6.64 -82.21 -0.55 -0.16 16 24 C -0.09 -0.50 6.26 -91.77 -0.57 -1.07 16 25 C -0.17 -0.72 10.22 -26.74 -0.27 -0.99 16 26 C -0.17 -0.71 10.23 -26.73 -0.27 -0.99 16 27 N -0.38 -3.31 6.80 33.50 0.23 -3.08 16 28 H 0.44 2.22 8.96 -190.44 -1.71 0.51 16 29 N -0.25 -3.01 9.72 33.42 0.32 -2.69 16 30 C 0.12 2.22 4.73 -3.31 -0.02 2.21 16 31 C -0.09 -1.48 2.52 -91.66 -0.23 -1.71 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.39 10.31 5.72 -40.82 -0.23 10.07 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.88 8.00 -51.92 -0.42 0.46 16 41 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16 42 H 0.07 0.91 7.15 -51.93 -0.37 0.54 16 43 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 44 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 50 H 0.09 1.87 7.68 -51.93 -0.40 1.47 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -34.20 397.50 -12.09 -46.29 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -9.40 Total: 8.40 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -4.18 Total: -4.35 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.43 Total: -62.83 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.20 -12.09 -46.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992820228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.826 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds