Wall clock time and date at job start Wed Apr 1 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46753 * 240.00037 * 3 2 1 5 5 H 1.48506 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47387 * 119.99769 * 3 2 1 7 7 C 1.38810 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00564 * 179.97438 * 9 7 2 11 11 H 1.09002 * 108.17262 * 32.13034 * 10 9 7 12 12 C 1.51494 * 108.27674 * 275.00046 * 10 9 7 13 13 C 1.52672 * 110.81451 * 191.85410 * 12 10 9 14 14 C 1.52845 * 108.58004 * 60.04407 * 13 12 10 15 15 C 1.52900 * 109.68723 * 294.87886 * 14 13 12 16 16 H 1.09002 * 111.17141 * 289.44441 * 15 14 13 17 17 C 1.54799 * 107.41758 * 167.41714 * 15 14 13 18 18 N 1.46938 * 107.28274 * 262.33228 * 17 15 14 19 19 C 1.34772 * 125.40387 * 178.40396 * 18 17 15 20 20 O 1.21580 * 120.00140 * 180.02562 * 19 18 17 21 21 C 1.47713 * 120.00323 * 0.03823 * 19 18 17 22 22 C 1.41499 * 126.52046 * 179.97438 * 21 19 18 23 23 C 1.35363 * 105.50515 * 180.02562 * 22 21 19 24 24 C 1.50700 * 126.38759 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.50089 * 213.61859 * 24 23 22 26 26 C 1.52994 * 60.00315 * 252.51218 * 25 24 23 27 27 N 1.35035 * 107.22570 * 359.97438 * 23 22 21 28 28 H 0.97003 * 124.88208 * 180.02562 * 27 23 22 29 29 N 1.28463 * 110.23203 * 359.72400 * 27 23 22 30 30 C 1.47231 * 109.19038 * 358.43750 * 18 17 15 31 31 C 1.50162 * 108.19731 * 148.40810 * 10 9 7 32 32 H 1.08995 * 108.27337 * 280.02914 * 31 10 9 33 33 H 0.96994 * 120.00457 * 0.02562 * 1 2 3 34 34 H 0.97000 * 119.99769 * 359.97438 * 9 7 2 35 35 H 1.09001 * 109.20904 * 71.51383 * 12 10 9 36 36 H 1.08993 * 109.21263 * 312.20002 * 12 10 9 37 37 H 1.09002 * 109.62262 * 300.31672 * 13 12 10 38 38 H 1.09004 * 109.76760 * 179.86205 * 13 12 10 39 39 H 1.08999 * 109.43561 * 174.80397 * 14 13 12 40 40 H 1.09007 * 109.39319 * 54.91647 * 14 13 12 41 41 H 1.08995 * 109.88311 * 142.90427 * 17 15 14 42 42 H 1.09004 * 109.87653 * 21.74850 * 17 15 14 43 43 H 1.08004 * 127.24833 * 359.97438 * 22 21 19 44 44 H 1.09007 * 115.54921 * 359.33015 * 24 23 22 45 45 H 1.09000 * 117.49603 * 0.02562 * 25 24 23 46 46 H 1.08999 * 117.50087 * 145.02035 * 25 24 23 47 47 H 1.09004 * 117.49787 * 252.51264 * 26 25 24 48 48 H 1.08993 * 117.50328 * 107.48596 * 26 25 24 49 49 H 1.09002 * 110.24231 * 100.45927 * 30 18 17 50 50 H 1.08998 * 110.24289 * 222.36280 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9877 -3.5127 0.5513 12 6 2.4043 -4.0055 -1.4325 13 6 2.9054 -5.4440 -1.5349 14 6 1.8025 -6.3802 -1.0416 15 6 1.5498 -6.1390 0.4470 16 1 2.3829 -6.4986 1.0510 17 6 0.2325 -6.8632 0.8167 18 7 -0.8400 -5.8591 0.7897 19 6 -2.1441 -6.1031 1.0267 20 8 -2.9511 -5.1951 0.9778 21 6 -2.5929 -7.4737 1.3461 22 6 -3.9198 -7.8834 1.6177 23 6 -3.8465 -9.2143 1.8533 24 6 -4.9969 -10.1269 2.1924 25 6 -4.7163 -11.2953 3.1395 26 6 -4.9481 -11.5567 1.6500 27 7 -2.5505 -9.5719 1.7278 28 1 -2.2097 -10.4726 1.8439 29 7 -1.8345 -8.5487 1.4265 30 6 -0.2640 -4.5444 0.4619 31 6 1.2403 -4.6704 0.7478 32 1 1.3894 -4.5098 1.8155 33 1 -0.4850 0.8400 -0.0004 34 1 0.3557 -2.3881 0.0005 35 1 3.1812 -3.3290 -1.7886 36 1 1.5166 -3.8899 -2.0542 37 1 3.7939 -5.5671 -0.9157 38 1 3.1468 -5.6774 -2.5719 39 1 2.1096 -7.4148 -1.1945 40 1 0.8869 -6.1871 -1.6007 41 1 0.3132 -7.2927 1.8152 42 1 0.0241 -7.6477 0.0892 43 1 -4.8047 -7.2643 1.6343 44 1 -5.9734 -9.6472 2.2599 45 1 -3.6998 -11.4036 3.5176 46 1 -5.5082 -11.5845 3.8304 47 1 -5.8925 -12.0178 1.3609 48 1 -4.0840 -11.8372 1.0478 49 1 -0.4298 -4.3117 -0.5900 50 1 -0.7043 -3.7720 1.0924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992820228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:16 Heat of formation + Delta-G solvation = 55.297836 kcal Electronic energy + Delta-G solvation = -30473.180476 eV Core-core repulsion = 26501.761731 eV Total energy + Delta-G solvation = -3971.418745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.81807 -41.61644 -39.71814 -38.07404 -37.00971 -35.52494 -33.46175 -33.09259 -32.12677 -31.32550 -30.42127 -28.14706 -26.50753 -25.60720 -24.58224 -23.62747 -23.26491 -22.76523 -22.19932 -22.00281 -20.16869 -19.69643 -18.97016 -18.78235 -17.78671 -17.39250 -16.84454 -16.69204 -16.48295 -16.38438 -15.84780 -15.47117 -15.16751 -15.08422 -14.96482 -14.71545 -14.40310 -14.17523 -14.07943 -13.84280 -13.46709 -13.18431 -13.13628 -12.78992 -12.76240 -12.49224 -12.45370 -12.28396 -12.14803 -12.05191 -11.99989 -11.91392 -11.86541 -11.46220 -11.31135 -11.24301 -11.17929 -10.96171 -10.72016 -10.50784 -9.78524 -9.69973 -8.99371 -7.91182 -5.20695 0.42119 0.95574 1.45628 1.49457 1.55483 1.66817 2.04882 2.24281 2.56804 3.00565 3.16382 3.41134 3.42708 3.46552 3.51880 3.76789 3.77563 4.00178 4.04742 4.12925 4.16262 4.24844 4.28577 4.31252 4.40729 4.50420 4.54754 4.63942 4.68157 4.76235 4.76588 4.80881 4.84468 4.90459 4.96576 5.00886 5.08868 5.13897 5.16891 5.20331 5.20376 5.29918 5.31493 5.36226 5.45590 5.53852 5.59780 5.74490 6.01374 6.29943 6.41527 6.73296 7.02551 7.35058 8.12224 8.33695 9.32263 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.002465 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.225329 B =11355.302481 C =12574.269269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.188 3.812 11 H 0.047 0.953 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.105 4.105 15 C -0.078 4.078 16 H 0.125 0.875 17 C 0.117 3.883 18 N -0.601 5.601 19 C 0.600 3.400 20 O -0.581 6.581 21 C -0.027 4.027 22 C -0.199 4.199 23 C 0.070 3.930 24 C -0.108 4.108 25 C -0.163 4.163 26 C -0.162 4.162 27 N -0.361 5.361 28 H 0.460 0.540 29 N -0.247 5.247 30 C 0.129 3.871 31 C -0.080 4.080 32 H 0.065 0.935 33 H 0.249 0.751 34 H 0.371 0.629 35 H 0.045 0.955 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.157 0.843 44 H 0.139 0.861 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.048 0.952 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -32.319 4.065 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.387 5.387 10 C 0.080 3.920 11 H 0.065 0.935 12 C -0.162 4.162 13 C -0.145 4.145 14 C -0.143 4.143 15 C -0.097 4.097 16 H 0.143 0.857 17 C -0.005 4.005 18 N -0.333 5.333 19 C 0.388 3.612 20 O -0.460 6.460 21 C -0.186 4.186 22 C -0.227 4.227 23 C -0.056 4.056 24 C -0.128 4.128 25 C -0.200 4.200 26 C -0.199 4.199 27 N -0.078 5.078 28 H 0.308 0.692 29 N -0.084 5.084 30 C 0.006 3.994 31 C -0.100 4.100 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.204 0.796 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.175 0.825 44 H 0.156 0.844 45 H 0.119 0.881 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.119 0.881 49 H 0.067 0.933 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.394 -32.020 3.962 32.353 hybrid contribution -1.094 1.929 0.023 2.218 sum -3.488 -30.091 3.986 30.554 Atomic orbital electron populations 1.69850 1.06812 1.25930 1.59944 1.25605 0.96274 1.01265 1.04254 0.85210 0.77081 0.79233 0.78241 1.20267 1.22676 1.20253 1.19634 0.91462 0.85199 1.40365 0.90269 1.42970 1.05567 1.01167 1.88946 1.19399 0.93925 0.84316 0.94310 0.93515 1.21698 0.99612 0.97420 0.97471 1.21387 0.98548 0.92727 1.01817 1.21559 0.98407 1.00685 0.93610 1.22025 0.97317 0.91750 0.98656 0.85712 1.22475 0.84820 0.90256 1.02925 1.48326 1.06526 1.10925 1.67557 1.17073 0.80900 0.86545 0.76670 1.90798 1.53944 1.46373 1.54879 1.21459 0.93567 0.92073 1.11469 1.21564 0.97145 0.94747 1.09201 1.20678 0.86656 0.94030 1.04209 1.20650 0.95386 0.88882 1.07901 1.23215 1.04353 0.98926 0.93514 1.23217 1.05165 0.94890 0.96676 1.43304 1.04699 1.10426 1.49412 0.69168 1.73594 1.23023 0.94060 1.17758 1.21648 0.94368 0.84234 0.99167 1.21189 0.92049 0.96207 1.00555 0.91622 0.94278 0.79569 0.93569 0.94951 0.90276 0.90968 0.88488 0.93938 0.90135 0.89329 0.82519 0.84351 0.88108 0.86344 0.86332 0.88108 0.93326 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.41 13.06 21.65 0.28 -63.13 16 2 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 3 Si 0.97 48.04 29.55 68.60 2.03 50.06 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.23 -13.39 9.86 84.03 0.83 -12.56 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.75 -39.07 4.90 -329.68 -1.61 -40.69 16 10 C 0.19 7.45 2.55 43.58 0.11 7.56 16 11 H 0.05 1.84 8.01 -2.39 -0.02 1.82 16 12 C -0.12 -4.30 5.41 29.99 0.16 -4.13 16 13 C -0.11 -2.56 5.94 30.43 0.18 -2.38 16 14 C -0.11 -2.30 4.80 30.51 0.15 -2.15 16 15 C -0.08 -1.84 3.28 -10.19 -0.03 -1.87 16 16 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 17 C 0.12 2.89 5.00 86.91 0.43 3.32 16 18 N -0.60 -20.89 3.33 -817.60 -2.72 -23.61 16 19 C 0.60 22.86 7.85 86.75 0.68 23.54 16 20 O -0.58 -27.42 17.22 -3.97 -0.07 -27.48 16 21 C -0.03 -0.78 6.97 42.46 0.30 -0.49 16 22 C -0.20 -4.96 10.73 22.41 0.24 -4.72 16 23 C 0.07 1.15 6.64 41.40 0.28 1.43 16 24 C -0.11 -1.00 6.26 -11.54 -0.07 -1.07 16 25 C -0.16 -0.75 10.22 30.59 0.31 -0.44 16 26 C -0.16 -0.75 10.23 30.59 0.31 -0.43 16 27 N -0.36 -5.23 6.80 -47.93 -0.33 -5.55 16 28 H 0.46 2.82 8.96 -219.99 -1.97 0.85 16 29 N -0.25 -5.47 9.72 -48.18 -0.47 -5.94 16 30 C 0.13 5.22 4.73 86.46 0.41 5.63 16 31 C -0.08 -2.72 2.52 -11.47 -0.03 -2.75 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.37 21.45 5.72 -92.71 -0.53 20.92 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.12 8.00 -2.38 -0.02 1.10 16 41 H 0.08 1.81 7.79 -2.39 -0.02 1.79 16 42 H 0.09 1.96 7.15 -2.38 -0.02 1.94 16 43 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.05 2.16 7.91 -2.39 -0.02 2.14 16 50 H 0.04 2.02 7.68 -2.39 -0.02 2.01 16 Total: -1.00 -81.49 397.50 0.29 -81.20 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -1.54 Total: 31.14 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.72 Total: 4.01 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -4.85 Total: -138.92 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.07 Total: -27.48 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -81.49 0.29 -81.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992820228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.495 kcal (2) G-P(sol) polarization free energy of solvation -81.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds